BAC Information

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BAC

Clone NameB6Ng01-141N09
Chromosome12 (Build37)
Map Location 25,733,083 - 25,830,029
singlet/doubletdoublet
Overlap geneC330002I19Rik, Id2
Upstream gene9030624G23Rik, EG668710, LOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397
Downstream geneLOC100042973, LOC100042974, LOC668726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N09.bB6Ng01-141N09.g
ACCDH940188DH940189
length1,060896
definitionDH940188|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N09, 5' end.DH940189|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,733,083 - 25,734,168)(25,829,128 - 25,830,029)
sequence
gaattctgattaagactcattttgaagcttccatctaatggtttaaaaca
agctaatgtgtgctgcgttgagttctccaagtaagaaaaattaataaata
aattctgacatagaaaaccagtttactgaagcgatctgttctggattaca
caggtggatttcaagagagacagcacatgcatgttaaaggattagccttt
ggattctttgttccctctcaatataattagtttcttttaagaatttagca
acttaatgtttatattcctcttatgatatttcaattaaaattcattattt
cagctataaggttcatttaatttaaaagtaattttagtatataatattac
tttagaaaaggcttggaaagtgattcacatttctccttcattcaaagaaa
ctattggaacatatatggtttttaaattagtaacttattgcttgataaag
accaacgtacacataggagtcagacgtgctcttcactccgtggctgaggt
ggcctctgctaggtgtcaatactttacagcgttcttcctttctattttta
aactaatgcactcttggggtagacatttgaaactctgcaatgtcctgttc
aacttgcttggcttttgccctttaattgatggccattgatggagtttata
atacagctgctgtagtggtggtgtttgcctggtggggatttctgtttctc
tctgccatgtgcattagttggaattctatgaggaaaagtgttttcttcct
aattcatcctaattcatttacttaagtatttagttttaggctgagcatgg
tggtacacgcctttagtttagtacttgggaggcagagaccagccaatctc
tgtaagttcaaggccagcctagtctacatagttccaggacagccagagct
tcatagagagatcttgtcttaaaaaaaaaaaataaaaggtctatcagtat
gattcatggattttttctgtgactatatatatcatattatatttgtcatc
aaatatttatttgggattttgaacaaaaaagaaagtaagcaatgtaatat
atgaagtaag
gaattccagtcatagagatccgcagtcagtgctctgtgtcccatgaccag
gagtcaccgatcctttgcagacagtgacaataaacacatcaagcaatttc
tcttccttaggctaccaccaatctcagccttgaatgtgtgcttaagtaga
ttatgtgtgaatagttttacaacttggaggaaggacacctcgaggaagcc
aagcaagcaatctttccaaccagatccacttgcatggtgaccataaacac
acacaccacacacactcaaataaactgaagggcatttgattgacctctac
agggggagggggctgggagaagttccagcacaccacaggagcacctgttg
ggtggaacgcaggcctccagccatgttaaactgaaggtatgacttaaaaa
caaagcatgccaggtgtggtgcatgccttaaatcccagcactctgggagg
cagaggcaggtggatctctgtgaattcaaagccagcctggtctacatagt
gagctgctgaatcaccagggttgagtgtcctctaacactctggatgacat
tgggcagggattcgtgggaactcccccatctctcctgcatggataagaga
gatattcgttaagtgcagacttcgcagtcgggaggcagagggtgagaggt
gtggatgtgtttcctgtgcctgtagaattgagtactgaccacgaaggtcc
aagtgcagatagaaagtaggaccgaggcccagaggtcttcagcatggcgg
gcaactggggttgacagtgacttgttacctattttataaagaaccagagt
agaaattagaagattctcaaaccaagaaagataactgttaaggacctaaa
aatgctgatttggtcactgtagttatatgatgtaaattatctacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_25733083_25734168
seq2: B6Ng01-141N09.b_49_1108

seq1  GAATTCTGATTAAGACTCATTTTGAAGCTTCCATCTAATGGTTTAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTAAGACTCATTTTGAAGCTTCCATCTAATGGTTTAAAACA  50

seq1  AGCTAATGTGTGCTGCGTTGAGTTCTCCAAGTAAGAAAAATTAATAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATGTGTGCTGCGTTGAGTTCTCCAAGTAAGAAAAATTAATAAATA  100

seq1  AATTCTGACATAGAAAACCAGTTTACTGAAGCGATCTGTTCTGGATTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGACATAGAAAACCAGTTTACTGAAGCGATCTGTTCTGGATTACA  150

seq1  CAGGTGGATTTCAAGAGAGACAGCACATGCATGTTAAAGGATTAGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGATTTCAAGAGAGACAGCACATGCATGTTAAAGGATTAGCCTTT  200

seq1  GGATTCTTTGTTCCCTCTCAATATAATTAGTTTCTTTTAAGAATTTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTTGTTCCCTCTCAATATAATTAGTTTCTTTTAAGAATTTAGCA  250

seq1  ACTTAATGTTTATATTCCTCTTATGATATTTCAATTAAAATTCATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGTTTATATTCCTCTTATGATATTTCAATTAAAATTCATTATTT  300

seq1  CAGCTATAAGGTTCATTTAATTTAAAAGTAATTTTAGTATATAATATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATAAGGTTCATTTAATTTAAAAGTAATTTTAGTATATAATATTAC  350

seq1  TTTAGAAAAGGCTTGGAAAGTGATTCACATTTCTCCTTCATTCAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGGCTTGGAAAGTGATTCACATTTCTCCTTCATTCAAAGAAA  400

seq1  CTATTGGAACATATATGGTTTTTAAATTAGTAACTTATTGCTTGATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGAACATATATGGTTTTTAAATTAGTAACTTATTGCTTGATAAAG  450

seq1  ACCAACGTACACATAGGAGTCAGACGTGCTCTTCACTCCGTGGCTGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGTACACATAGGAGTCAGACGTGCTCTTCACTCCGTGGCTGAGGT  500

seq1  GGCCTCTGCTAGGTGTCAATACTTTACAGCGTTCTTCCTTTCTATTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGCTAGGTGTCAATACTTTACAGCGTTCTTCCTTTCTATTTTTA  550

seq1  AACTAATGCACTCTTGGGGTAGACATTTGAAACTCTGCAATGTCCTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGCACTCTTGGGGTAGACATTTGAAACTCTGCAATGTCCTGTTC  600

seq1  AACTTGCTTGGCTTTTGCCCTTTAATTGATGGCCATTGATGGAGTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTTGGCTTTTGCCCTTTAATTGATGGCCATTGATGGAGTTTATA  650

seq1  ATACAGCTGCTGTAGTGGTGGTGTTTGCCTGGTGGGGATTTCTGTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCTGCTGTAGTGGTGGTGTTTGCCTGGTGGGGATTTCTGTTTCTC  700

seq1  TCTGCCATGTGCATTAGTTGGAATTCTATGAGGAAAAGTGTTTTCTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATGTGCATTAGTTGGAATTCTATGAGGAAAAGTGTTTTCTTCCT  750

seq1  AATTCATCCTAATTCATTTACTTAAGTATTTAGTTTTAAGGCTGAGCATG  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTCATCCTAATTCATTTACTTAAGTATTTAGTTTT-AGGCTGAGCATG  799

seq1  GTGGTACACGCCTTTAGTTTCAGTACTTGGGAGGCAGAGACCAGCCAATC  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGGTACACGCCTTTAGTTT-AGTACTTGGGAGGCAGAGACCAGCCAATC  848

seq1  TCTGTAAGTTCAAGGCCAGCCTAGTCTACATAGTTCCAGGACAGCCAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGTTCAAGGCCAGCCTAGTCTACATAGTTCCAGGACAGCCAGAG  898

seq1  CTACATAGAGAGATCTTGTCTTAAAAAAAAAAAAAAAAAAAAAAAAGGTC  950
      || |||||||||||||||||||       |||||||||||| ||||||||
seq2  CTTCATAGAGAGATCTTGTCTT-------AAAAAAAAAAAATAAAAGGTC  941

seq1  TTATCAGTATGAATTCATGGATTTTTTTTCTGTGAACTATTATAATATCA  1000
       |||||||||| |||||||||  ||||||||||| |||| ||| ||||||
seq2  -TATCAGTATG-ATTCATGGA--TTTTTTCTGTG-ACTA-TAT-ATATCA  984

seq1  TAATTTATATTTGTCAATCAAATATTTATTTTGTGATTTTTGAAACAAAA  1050
      ||  ||||||||||| |||||||||||| |||| ||||||   |||||||
seq2  TA--TTATATTTGTC-ATCAAATATTTA-TTTGGGATTTT--GAACAAAA  1028

seq1  AAGAAAGTAAGCCAATGTAAATATATTGAAAGTAAG  1086
      ||||||||||| |||||| |||||||   |||||||
seq2  AAGAAAGTAAG-CAATGT-AATATAT--GAAGTAAG  1060

seq1: chr12_25829128_25830029
seq2: B6Ng01-141N09.g_67_962 (reverse)

seq1  TGGTATGATAATTTAACATTCATATAACCTACAGTGACCAAATCAGCATT  50
      ||||| |||||||| ||| |||||||| ||||||||||||||||||||||
seq2  TGGTA-GATAATTT-ACA-TCATATAA-CTACAGTGACCAAATCAGCATT  46

seq1  CTTAGGTCCTTAACAGTTATCCTTCTTTGTGTTGAGAATCTTCTAACTTC  100
       |||||||||||||||||||| ||||| || ||||||||||||||| || 
seq2  TTTAGGTCCTTAACAGTTATCTTTCTTGGT-TTGAGAATCTTCTAA-TTT  94

seq1  CTACTCTGGTTCTTTATAAAATAGGTAACAAGTCACTGTCAACCCCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGGTTCTTTATAAAATAGGTAACAAGTCACTGTCAACCCCAGTT  144

seq1  GCCCGCCATGCTGAAGACCTCTGGGCCTCGGTCCTACTTTCTATCTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCCATGCTGAAGACCTCTGGGCCTCGGTCCTACTTTCTATCTGCAC  194

seq1  TTGGACCTTCGTGGTCAGTACTCAATTCTACAGGCACAGGAAACACATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCTTCGTGGTCAGTACTCAATTCTACAGGCACAGGAAACACATCC  244

seq1  ACACCTCTCACCCTCTGCCTCCCGACTGCGAAGTCTGCACTTAACGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTCACCCTCTGCCTCCCGACTGCGAAGTCTGCACTTAACGAATA  294

seq1  TCTCTCTTATCCATGCAGGAGAGATGGGGGAGTTCCCACGAATCCCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTATCCATGCAGGAGAGATGGGGGAGTTCCCACGAATCCCTGCC  344

seq1  CAATGTCATCCAGAGTGTTAGAGGACACTCAACCCTGGTGATTCAGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCATCCAGAGTGTTAGAGGACACTCAACCCTGGTGATTCAGCAGC  394

seq1  TCACTATGTAGACCAGGCTGGCTTTGAATTCACAGAGATCCACCTGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGTAGACCAGGCTGGCTTTGAATTCACAGAGATCCACCTGCCTC  444

seq1  TGCCTCCCAGAGTGCTGGGATTTAAGGCATGCACCACACCTGGCATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAGAGTGCTGGGATTTAAGGCATGCACCACACCTGGCATGCTT  494

seq1  TGTTTTTAAGTCATACCTTCAGTTTAACATGGCTGGAGGCCTGCGTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAGTCATACCTTCAGTTTAACATGGCTGGAGGCCTGCGTTCCA  544

seq1  CCCAACAGGTGCTCCTGTGGTGTGCTGGAACTTCTCCCAGCCCCCTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGGTGCTCCTGTGGTGTGCTGGAACTTCTCCCAGCCCCCTCCCC  594

seq1  CTGTAGAGGTCAATCAAATGCCCTTCAGTTTATTTGAGTGTGTGTGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGGTCAATCAAATGCCCTTCAGTTTATTTGAGTGTGTGTGGTGT  644

seq1  GTGTGTTTATGGTCACCATGCAAGTGGATCTGGTTGGAAAGATTGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTATGGTCACCATGCAAGTGGATCTGGTTGGAAAGATTGCTTGC  694

seq1  TTGGCTTCCTCGAGGTGTCCTTCCTCCAAGTTGTAAAACTATTCACACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCCTCGAGGTGTCCTTCCTCCAAGTTGTAAAACTATTCACACAT  744

seq1  AATCTACTTAAGCACACATTCAAGGCTGAGATTGGTGGTAGCCTAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACTTAAGCACACATTCAAGGCTGAGATTGGTGGTAGCCTAAGGAA  794

seq1  GAGAAATTGCTTGATGTGTTTATTGTCACTGTCTGCAAAGGATCGGTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTGCTTGATGTGTTTATTGTCACTGTCTGCAAAGGATCGGTGAC  844

seq1  TCCTGGTCATGGGACACAGAGCACTGACTGCGGATCTCTATGACTGGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCATGGGACACAGAGCACTGACTGCGGATCTCTATGACTGGAAT  894

seq1  TC  902
      ||
seq2  TC  896