BAC Information

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BAC

Clone NameB6Ng01-142I19
Chromosome12 (Build37)
Map Location 80,112,771 - 80,215,962
singlet/doubletdoublet
Overlap genePlekhh1, Pigh, LOC666722
Upstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik
Downstream geneArg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142I19.bB6Ng01-142I19.g
ACCDH940721DH940722
length9091,199
definitionDH940721|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I19, 5' end.DH940722|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,215,376 - 80,215,962)(80,112,771 - 80,113,986)
sequence
gaattcacgcagttgaatccttctcaacagtctgtgttgtgggaacactt
cattaccaccattccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacacttcattaccatgacccgcagt
tctggttccggaatgagggatcttccttgcgccagtgatggtaaccgtcc
caggttttctcatcccaggatttctcgtcccaggtcttttcgtcccgtcc
cgggtctcagcaccaactcttacacgcgttctcgcgaccggccaggaaga
acgcagcaaaccggaatcttctgcggcaaaagctttattgcttacatctt
caggagcaagagagcaagagagagaaaaagaacaagaacaagaaagcaag
agagagaaagcaagaacaagagagagaaaaagcaagaacaagagagagag
aaagaatggcaaaaccccgtcccttttaaggagaattatcctccacctag
gacgtattactccctgattgactgcagcccatcggcccagttgtcatcac
gagaaaggcagaacacatggcgggaaaactgcccctgcacgtgtgcagat
tatgtttactacttagaacacagctgtcagcgccatcttataatggcaaa
tgtgagggcggctcctcacacttttgcatatttcctgtcttctttcctaa
acttttatttatttttaaatatttttcatattcattcctagtcaagagat
tctaaatgacagactcattcatctgatttcatttaaaagggacccccaat
ttttttaaaccactaggagctttatttttagaaagatgccaacacaagta
tctccctaaatgttttgctttttaaccctgcttaagtgaacacacggaat
aaacccaga
gaattcacataaacactggatgagcatggggtcttgcctgtaatttcagt
ctaaggagcctaacacagagaatcttcagaacaagcagtgttcaagacta
agccaggtcactgagctctgcgattgactgagagactctgcctcagtaaa
tgaagtggaagagaatgattcctgaaatcaacctggggcatataaactca
cccaaaaacatgcaaaacatgcatacatgtatgcacaccacacatacaca
cataaaaatgggaggaggggaacatgtcttaattagaatttttgtggcac
agcagacctggatttgaactcagactctacatccttgttagatatcttag
ggcagctcatctttctcagactacttcctcatctgtaaagtggacatagc
aacaatacccaccctaggatgttgtgtgcataagatgatatgttaaaggt
gccttctacggtaccaggcataaagtacctaatagtaccaatagcatcat
catggaaaatccctgcaaccgtcaagagttatcagggggctggtgagatg
gctcagcagtaccaattgctcttccaaaggtcctgagttcaaatcccagc
aaccacatggtggctcacaaccatccgtaatgaaatctgatgccctcttc
tgtagtgtctgaagacagctacagtgtacttacatgtatagataaataaa
taaataaataaataaataaataaataaataaatatttttttaaaaagagt
tatctttacgcgtcctttctaccaccatgatacaaaaaataaaaatgttt
taagtgtctatgtagcctctaaaatatcttgcacatattaagttcttagc
catattttctgaaggacatgggacttctgcttttcctataaagcaaacca
ctcataaagggcttactcttgtctccagcataagatgctcttgtgagctg
ggcgtgtggcacacaccttttatcccagcactggagcagaggtagtggat
ttctgagtaggcagggggggagcctgtcctatgtggtgaagagtgttcaa
gagtaacaggcttgccattgaaaatggaatatctggccatactcctctct
ctgagaaaacccgacctcttagtagcagagatcactcatatggcagctct
catcatggcaatccttggcctcgactctccatgtgctgcgcagattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_80215376_80215962
seq2: B6Ng01-142I19.b_47_633 (reverse)

seq1  CAGGGGCAGTTTTCCCGCCATGTGTTCTGCCTTTCTCGTGATGACAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGTTTTCCCGCCATGTGTTCTGCCTTTCTCGTGATGACAACTG  50

seq1  GGCCGATGGGCTGCAGTCAATCAGGGAGTAATACGTCCTAGGTGGAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGATGGGCTGCAGTCAATCAGGGAGTAATACGTCCTAGGTGGAGGAT  100

seq1  AATTCTCCTTAAAAGGGACGGGGTTTTGCCATTCTTTCTCTCTCTCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCTTAAAAGGGACGGGGTTTTGCCATTCTTTCTCTCTCTCTTGT  150

seq1  TCTTGCTTTTTCTCTCTCTTGTTCTTGCTTTCTCTCTCTTGCTTTCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTTTCTCTCTCTTGTTCTTGCTTTCTCTCTCTTGCTTTCTTGT  200

seq1  TCTTGTTCTTTTTCTCTCTCTTGCTCTCTTGCTCCTGAAGATGTAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCTTTTTCTCTCTCTTGCTCTCTTGCTCCTGAAGATGTAAGCAA  250

seq1  TAAAGCTTTTGCCGCAGAAGATTCCGGTTTGCTGCGTTCTTCCTGGCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTTGCCGCAGAAGATTCCGGTTTGCTGCGTTCTTCCTGGCCGG  300

seq1  TCGCGAGAACGCGTGTAAGAGTTGGTGCTGAGACCCGGGACGGGACGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGAGAACGCGTGTAAGAGTTGGTGCTGAGACCCGGGACGGGACGAAA  350

seq1  AGACCTGGGACGAGAAATCCTGGGATGAGAAAACCTGGGACGGTTACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGGACGAGAAATCCTGGGATGAGAAAACCTGGGACGGTTACCAT  400

seq1  CACTGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGGGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGGGTCATG  450

seq1  GTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGT  500

seq1  GAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCACA  550

seq1  ACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  587
      |||||||||||||||||||||||||||||||||||||
seq2  ACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  587

seq1: chr12_80112771_80113986
seq2: B6Ng01-142I19.g_67_1265

seq1  GAATTCACATAAACACTGGATGAGCATGGGGTCTTGCCTGTAATTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAAACACTGGATGAGCATGGGGTCTTGCCTGTAATTTCAGT  50

seq1  CTAAGGAGCCTAACACAGAGAATCTTCAGAACAAGCAGTGTTCAAGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGCCTAACACAGAGAATCTTCAGAACAAGCAGTGTTCAAGACTA  100

seq1  AGCCAGGTCACTGAGCTCTGCGATTGACTGAGAGACTCTGCCTCAGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTCACTGAGCTCTGCGATTGACTGAGAGACTCTGCCTCAGTAAA  150

seq1  TGAAGTGGAAGAGAATGATTCCTGAAATCAACCTGGGGCATATAAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGAAGAGAATGATTCCTGAAATCAACCTGGGGCATATAAACTCA  200

seq1  CCCAAAAACATGCAAAACATGCATACATGTATGCACACCACACATACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAACATGCAAAACATGCATACATGTATGCACACCACACATACACA  250

seq1  CATAAAAATGGGAGGAGGGGAACATGTCTTAATTAGAATTTTTGTGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAATGGGAGGAGGGGAACATGTCTTAATTAGAATTTTTGTGGCAC  300

seq1  AGCAGACCTGGATTTGAACTCAGACTCTACATCCTTGTTAGATATCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACCTGGATTTGAACTCAGACTCTACATCCTTGTTAGATATCTTAG  350

seq1  GGCAGCTCATCTTTCTCAGACTACTTCCTCATCTGTAAAGTGGACATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCATCTTTCTCAGACTACTTCCTCATCTGTAAAGTGGACATAGC  400

seq1  AACAATACCCACCCTAGGATGTTGTGTGCATAAGATGATATGTTAAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACCCACCCTAGGATGTTGTGTGCATAAGATGATATGTTAAAGGT  450

seq1  GCCTTCTACGGTACCAGGCATAAAGTACCTAATAGTACCAATAGCATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTACGGTACCAGGCATAAAGTACCTAATAGTACCAATAGCATCAT  500

seq1  CATGGAAAATCCCTGCAACCGTCAAGAGTTATCAGGGGGCTGGTGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAATCCCTGCAACCGTCAAGAGTTATCAGGGGGCTGGTGAGATG  550

seq1  GCTCAGCAGTACCAATTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGTACCAATTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGC  600

seq1  AACCACATGGTGGCTCACAACCATCCGTAATGAAATCTGATGCCCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCTCACAACCATCCGTAATGAAATCTGATGCCCTCTTC  650

seq1  TGTAGTGTCTGAAGACAGCTACAGTGTACTTACATGTAATAGATAAATAA  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTAGTGTCTGAAGACAGCTACAGTGTACTTACATGT-ATAGATAAATAA  699

seq1  ATAAATAAATAAATAAATAAATAAATAAATAAATATTTTTTTAAAAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATAAATAAATAAATAAATATTTTTTTAAAAAGAG  749

seq1  TTATCTTTACGCGTCCTTTCTACCACCATGATACAAAAAAATAAAAATGT  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTATCTTTACGCGTCCTTTCTACCACCATGATAC-AAAAAATAAAAATGT  798

seq1  TTTAAGTGTCTATGTAGCCTCTAAAATATCTTGCACATATTAAGTTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGTCTATGTAGCCTCTAAAATATCTTGCACATATTAAGTTCTTA  848

seq1  GCCATATTTTCTGAAGGACATGGGACTTCTGCTTTTCCTATAAAGCAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTTTCTGAAGGACATGGGACTTCTGCTTTTCCTATAAAGCAAAC  898

seq1  CACTCATAAAGGGCTTACTCTTGTCTCCAGCATAAGGAATGCTCTTGGTG  950
      ||||||||||||||||||||||||||||||||||||  |||||||| |||
seq2  CACTCATAAAGGGCTTACTCTTGTCTCCAGCATAAG--ATGCTCTT-GTG  945

seq1  AGCTGGGCGTGGTGGCACACACCTTTAATCCCAGCACTTGGGAAGCAGAG  1000
      |||||||||| ||||||||||||||| |||||||||||   | |||||||
seq2  AGCTGGGCGT-GTGGCACACACCTTTTATCCCAGCACT---GGAGCAGAG  991

seq1  GTAGGTGGATTTCTGAGTTAGGCAGTGGGGGAGCCTGT-CTATGTGGTG-  1048
      ||| ||||||||||||| ||||||| |||||||||||| |||||||||| 
seq2  GTA-GTGGATTTCTGAG-TAGGCAGGGGGGGAGCCTGTCCTATGTGGTGA  1039

seq1  AGAGTGGTTCAGAGTAACAGGCTGGCATTTGAAAATGG-ATTTCTGTGCA  1097
      |||||| |  ||||||||||||| ||  |||||||||| || |||| || 
seq2  AGAGTGTTCAAGAGTAACAGGCTTGCCATTGAAAATGGAATATCTG-GCC  1088

seq1  ACACCCCCTCCCCAGAGAAAAACCCAGCTTCTTTATGAAGCAGAGTACCA  1147
      | || ||   | | ||| |||||||  | ||||   | ||||||| | ||
seq2  ATACTCCTCTCTCTGAG-AAAACCCGACCTCTT--AGTAGCAGAG-ATCA  1134

seq1  CTTCATTGCCCAGTCTCTTCAAATTCATGGCAATCCTCTGGCCTCAACCT  1197
      | ||||    ||| ||| |||   ||||||||||||| ||||||| ||  
seq2  C-TCATATGGCAG-CTC-TCA---TCATGGCAATCCT-TGGCCTCGACTC  1177

seq1  CCCATGTGCTG---AGATTATA  1216
       ||||||||||   ||||||||
seq2  TCCATGTGCTGCGCAGATTATA  1199