BAC Information

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BAC

Clone NameB6Ng01-143C01
Chromosome12 (Build37)
Map Location 44,947,553 - 45,076,152
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507
Downstream geneLOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143C01.bB6Ng01-143C01.g
ACCDH941146DH941147
length1,167514
definitionDH941146|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C01, 5' end.DH941147|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,074,962 - 45,076,152)(44,947,553 - 44,948,083)
sequence
gaattcttaccattgttagctttatatttctcttcctttcttttaaaatg
tttgtttccttggaagaacacaagagcactatgatgcttaaaaaaaaaaa
aaaaaagatcaattcccttgtgagatactcaaaaaggacatggctcttct
ttcccaacatagaataaaactgggtgggttttacttcattttcacagaat
gcagggaattctgttttctagaagcttttctgtgacttttgcaggtttca
gggagtctctgccttatcctttaaagaaggcaatatttctaaaaattccc
atttggtattatactttcctctataaaatctttcaaaaagcatctaagta
tgtctacagtgtgaaatttatattgaaagacttgcttttcccataatgta
ctgtgattttttttccacacttgtccttacctaccttctgtgcccttccc
tgagactttcctaccccccagcatcctacagtcctccatcgttggctgct
gaacccaccaactctaagtcagtgccaatgacatctgtttagagaaggct
tcctttgctgataatattttcttccttttctatctcgccctttctatctt
gtccctctttcataaaacttacatatcccttgcccaagaactgttctaat
tcctgatcgcattattcatcagactaagaacaagattataaattctgtca
tatttgtagtttttattcctatgtgtttagtagtgtgcttaaaatttagt
atcataaaccaactttgttgactaagaattaagagtcaagagtaagaggc
tagataattagtggtcaagaatgctgatgtttaagaagttctgaaatcag
tacccagcatccacatagtgtcttaaagccaccagctgcagagccacatg
acctcttttgaacaaacctacataggttagtgcacacacacacacacaca
cacacacacatacacacatatcacatcagaacaaactacacaaaacaaaa
aaatcccgatcaagtacaaactatgcaatcatcatataatgaaatctcaa
ttttaaagcatccctatagacaacatagtatggatgtgacatactcttga
tatgactccattgaatgttaagttggactagcagctataattttttcttt
ttttcatttttattagg
aaatctgggcatgctctttgtttgaggagaagagcttttatttcttccct
taatatgatgtaaatttattattgataactcagagctggtcactaataca
ttcaatccctctctccctttctctcccgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtctgtctttctgtggc
tatgtgagattgtgcatgtacatgtctccagaaatggacaaaaaaaaaaa
aaaaaaaaaaaaaaaagcctgaatgtttctagtgagaagaaagataggag
ttttgaaatgagaagctgattgctaatcaacaaggacagactctatctga
ggtacaacaggtagaaatacgacctgtttattcatgggctttagagtcta
cctatgtggtcatcatctgtatttgacattttcttttatgtaaaaaaact
taatgttacctgtttaattatatctgtgaaatttatatattattgatagt
gttttagatatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45074962_45076152
seq2: B6Ng01-143C01.b_48_1214 (reverse)

seq1  CCTAATAAAAAATGGAAAAAAAAGAAAAAAAATTATATAAGCTGCCTAGT  50
      |||||| |||||||  ||||||||  ||||||||||   ||||| |||||
seq2  CCTAAT-AAAAATG--AAAAAAAG--AAAAAATTAT---AGCTG-CTAGT  41

seq1  CCAACTTTAACATTCAAT-GAGTCATATACAGAGTATGTCACCATCCATA  99
      ||||| |||||||||||| |||||||||  ||||||||||| ||||||||
seq2  CCAAC-TTAACATTCAATGGAGTCATATCAAGAGTATGTCA-CATCCATA  89

seq1  CTATGTTGTCTATAGGGGATGCTTTAATAAATGTGAGATTTCATTTAATA  149
      |||||||||||||| |||||||||||  |||| ||||||||||||  |||
seq2  CTATGTTGTCTATA-GGGATGCTTTA--AAAT-TGAGATTTCATT--ATA  133

seq1  TGATGATTGCATAGTTTTGTACTTGGAATCGGGATTTTTTTTGTTTTGTG  199
      |||||||||||||| ||||||||||  ||||||| |||||||||||||||
seq2  TGATGATTGCATAG-TTTGTACTTG--ATCGGGA-TTTTTTTGTTTTGTG  179

seq1  TAGTTTTGTTCTGATTGTGATTATGTGTGTATGTGGTGTGTGTGTGTGTG  249
      ||| |||||||||| ||||| ||||||||||||| |||||||||||||||
seq2  TAG-TTTGTTCTGA-TGTGA-TATGTGTGTATGT-GTGTGTGTGTGTGTG  225

seq1  TGTGTGTGTGCACTAACCTATGTAGGTTTGTTCAAAAGAGGTCATGTGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCACTAACCTATGTAGGTTTGTTCAAAAGAGGTCATGTGGC  275

seq1  TCTGCAGCTGGTGGCTTTAAGACACTATGTGGATGCTGGGTACTGATTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTGGTGGCTTTAAGACACTATGTGGATGCTGGGTACTGATTTC  325

seq1  AGAACTTCTTAAACATCAGCATTCTTGACCACTAATTATCTAGCCTCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTTAAACATCAGCATTCTTGACCACTAATTATCTAGCCTCTTA  375

seq1  CTCTTGACTCTTAATTCTTAGTCAACAAAGTTGGTTTATGATACTAAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGACTCTTAATTCTTAGTCAACAAAGTTGGTTTATGATACTAAATT  425

seq1  TTAAGCACACTACTAAACACATAGGAATAAAAACTACAAATATGACAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCACACTACTAAACACATAGGAATAAAAACTACAAATATGACAGAA  475

seq1  TTTATAATCTTGTTCTTAGTCTGATGAATAATGCGATCAGGAATTAGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATCTTGTTCTTAGTCTGATGAATAATGCGATCAGGAATTAGAAC  525

seq1  AGTTCTTGGGCAAGGGATATGTAAGTTTTATGAAAGAGGGACAAGATAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGGGCAAGGGATATGTAAGTTTTATGAAAGAGGGACAAGATAGA  575

seq1  AAGGGCGAGATAGAAAAGGAAGAAAATATTATCAGCAAAGGAAGCCTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGAGATAGAAAAGGAAGAAAATATTATCAGCAAAGGAAGCCTTCT  625

seq1  CTAAACAGATGTCATTGGCACTGACTTAGAGTTGGTGGGTTCAGCAGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGATGTCATTGGCACTGACTTAGAGTTGGTGGGTTCAGCAGCCA  675

seq1  ACGATGGAGGACTGTAGGATGCTGGGGGGTAGGAAAGTCTCAGGGAAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGAGGACTGTAGGATGCTGGGGGGTAGGAAAGTCTCAGGGAAGGG  725

seq1  CACAGAAGGTAGGTAAGGACAAGTGTGGAAAAAAAATCACAGTACATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGGTAGGTAAGGACAAGTGTGGAAAAAAAATCACAGTACATTAT  775

seq1  GGGAAAAGCAAGTCTTTCAATATAAATTTCACACTGTAGACATACTTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGCAAGTCTTTCAATATAAATTTCACACTGTAGACATACTTAGA  825

seq1  TGCTTTTTGAAAGATTTTATAGAGGAAAGTATAATACCAAATGGGAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTGAAAGATTTTATAGAGGAAAGTATAATACCAAATGGGAATTT  875

seq1  TTAGAAATATTGCCTTCTTTAAAGGATAAGGCAGAGACTCCCTGAAACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATATTGCCTTCTTTAAAGGATAAGGCAGAGACTCCCTGAAACCT  925

seq1  GCAAAAGTCACAGAAAAGCTTCTAGAAAACAGAATTCCCTGCATTCTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTCACAGAAAAGCTTCTAGAAAACAGAATTCCCTGCATTCTGTG  975

seq1  AAAATGAAGTAAAACCCACCCAGTTTTATTCTATGTTGGGAAAGAAGAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGTAAAACCCACCCAGTTTTATTCTATGTTGGGAAAGAAGAGC  1025

seq1  CATGTCCTTTTTGAGTATCTCACAAGGGAATTGATCTTTTTTTTTTTTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTTTTTGAGTATCTCACAAGGGAATTGATCTTTTTTTTTTTTTT  1075

seq1  TTTAAGCATCATAGTGCTCTTGTGTTCTTCCAAGGAAACAAACATTTTAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCATCATAGTGCTCTTGTGTTCTTCCAAGGAAACAAACATTTTAA  1125

seq1  AAGAAAGGAAGAGAAATATAAAGCTAACAATGGTAAGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAAGAGAAATATAAAGCTAACAATGGTAAGAATTC  1167

seq1: chr12_44947553_44948083
seq2: B6Ng01-143C01.g_64_583

seq1  GAATTCAAATCTGGGCATGCTCTTTGTTTGAGGAGAAGAGCTTTTATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTGGGCATGCTCTTTGTTTGAGGAGAAGAGCTTTTATTTC  50

seq1  TTCCCTTAATATGATGTAAATTTATTATTGATAACTCAGAGCTGGTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTAATATGATGTAAATTTATTATTGATAACTCAGAGCTGGTCACT  100

seq1  AATACATTCAATCCCTCTCTCCCTTTCTCTCCCGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTCAATCCCTCTCTCCCTTTCTCTCCCGTGTGTGTGTGTGTGTG  150

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTCAGTCTGTCTTTC  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGTCTGTCTTTC  200

seq1  TGTGGCTATGTGAGATTGTGCATGTACATGTCTCCAGAAATGGACAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTATGTGAGATTGTGCATGTACATGTCTCCAGAAATGGACAAAAA  250

seq1  AAAAAAAAAAAAAAAAAAAAAAGCCTGAATGTTTCTAGTGAGAAGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAGCCTGAATGTTTCTAGTGAGAAGAAAGA  300

seq1  TAGGAGTTTTGAAATGAGAAGCTGATTGCTAATCAACAAGGACAGACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTTTGAAATGAGAAGCTGATTGCTAATCAACAAGGACAGACTCT  350

seq1  ATCTGAGGCACAACAGGCAGAAAGACGACCTGTTTAACACATAAGCTTTA  400
      |||||||| |||||||| ||||| ||||||||||| |  |||  ||||| 
seq2  ATCTGAGGTACAACAGGTAGAAATACGACCTGTTT-ATTCATGGGCTTT-  398

seq1  AGAGGCTATCTATGTGGTCATCAATCTGTAATTTGACAATTTCTTTTATG  450
      |||| ||| ||||||||||||| |||||| |||||||| |||||||||||
seq2  AGAGTCTACCTATGTGGTCATC-ATCTGT-ATTTGACATTTTCTTTTATG  446

seq1  TATAAGAACTTAAAATGGTAACACAGGGAAAACAAAATTTGTGAAATTAA  500
      || || |||||  |||| |   ||  |   ||  | || |||||||||  
seq2  TAAAAAAACTT--AATGTT---ACCTGTTTAATTATATCTGTGAAATT--  489

seq1  ATAGATA-TATTGTTAGTGTTTTAGATATGGT  531
       || ||| ||||| ||||||||||||||||||
seq2  -TATATATTATTGATAGTGTTTTAGATATGGT  520