BAC Information

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BAC

Clone NameB6Ng01-143E17
Chromosome12 (Build37)
Map Location 99,928,253 - 100,039,693
singlet/doubletdoublet
Overlap genePtpn21, Zc3h14, Eml5
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7
Downstream geneLOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143E17.bB6Ng01-143E17.g
ACCDH941269DH941270
length1,0381,058
definitionDH941269|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E17, 5' end.DH941270|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,928,253 - 99,929,295)(100,038,615 - 100,039,693)
sequence
gaattccaccgtaaaagggcaccacggtgtacagcaggtacaaagctttc
ctgcccaacacgggggtcactggtagtcagaaccaaaagttaccgccaaa
ggccaggaaaccaagaagaataaggctaagataactatagttgccccacc
aagcctgcagttgagcaagacatggatccagggctcctaactctccggca
gcagtatgtctgtctggactagaggcggctgtctttctgccactcgacct
acagctcccctgaactgctttctgagtactatttccaaagctaaacacaa
agtcagccgtcaaagcccgtggaaatactgtgtgctgctgaagctccgtg
actacccactgggcacgttttgttctgctacacacagctctcagagcctc
ttcattcctcctgccccaccctgtgcttctctgtctgcagagctctcagc
cattgctagatctctaggtgcctttctggtcacagatccctcacccatgt
tgcctagaccagtgtgacacccacggcagtgtccctgccttcatgctctc
taagagcacacagaactgtacctctttatcccttagtgccgagcacatac
atgagacgagtgacaggaaggagaaagtgagcagagggttttttgtttgg
ttggttttttggtttttggttttcaagacagggtttctctgtgtagcctt
ggttgtcctggaactcactctgtagacaggctggcctcgaactcagaaat
ccgcctgcctctgccctcccaagtgctgggattaaaggcgtgagccacca
cgcctggcttaaggtgagcagagttagaggcagtttcagagggacttcct
tcctcccatctcccagtgccatggcccaccgagtgggtcctccacaatgg
caaagggcctcctccagttctggagccccgatcaggctacatggacggag
cctcacctgacagcacacagcagacaggactgtgtcagagtaatccactg
cctgtggactgcgggtggctggtgtagggtggtgggta
gaattcactgcatacatactacctggcttcagattcacaaagatccactt
gcttctatctccccagagtgccaggatttggaatggaaacccaataaaat
aaattccctgacacactctagacagaacacttaatttctatgagaaatta
atggagccatatagaaaaatgtatggtccttaaaatgtcctctaaattgt
cacagaatagcccattaaatatatcactatgaacatgtatatactgtgat
tataggccatgtgattgttaagtaattgttttaaactatgcaatttgagg
aaactgttaagtctgttaattagcttacttcttatactaacctggaaaat
tttgttgtgtcttctgtaccaggggccaaaattgccagcagaggtgggca
caaccaacgtatttttgtagcagaatttcgaccagattcagatacccagt
ttgtctctgtgggtataaagcacgtgaagttctggaccctggcaggaagg
gctcttctcagcaaaaagggacttctgagcagcctggaggatgcccggat
gcagacgatgcttgctgttgcatttggtgcagtatgtctgttaaagtgct
gtgtgatggtgtgatcttgaatttgtcttactgtgtattcataaacagca
ttaatactgactgggaactgtaacccgacagtcattacaagtccctgtca
aggacataaatcatctctttaaaagtctgatcctttaaccattaaggtgt
gccagaaagtgaatgaggtcattactgcagtgttggcatccttggatcat
tcctattctccaaggcttcattggctgtgtgcttgtcaccactgcaagcg
gacaaagctgagcctcctagttgcttcctcctgcacctcaagtgtgttat
cggcaaagaggggaattgaaaaccccatccaggtgtttcaggcagatttg
atgtaagtgtcctttgcctctgtcactgggactgtcatctgtgtggatgc
ctgggcactgtccctttcaggaccagtccctgccttatggagagtcagac
tcttgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_99928253_99929295
seq2: B6Ng01-143E17.b_49_1086

seq1  GAATTCCACCGTAAAAGGGCACCACGGTGTACAGCAGGTACAAAGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCGTAAAAGGGCACCACGGTGTACAGCAGGTACAAAGCTTTC  50

seq1  CTGCCCAACACGGGGGTCACTGGTAGTCAGAACCAAAAGTTACCGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAACACGGGGGTCACTGGTAGTCAGAACCAAAAGTTACCGCCAAA  100

seq1  GGCCAGGAAACCAAGAAGAATAAGGCTAAGATAACTATAGTTGCCCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAAACCAAGAAGAATAAGGCTAAGATAACTATAGTTGCCCCACC  150

seq1  AAGCCTGCAGTTGAGCAAGACATGGATCCAGGGCTCCTAACTCTCCGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCAGTTGAGCAAGACATGGATCCAGGGCTCCTAACTCTCCGGCA  200

seq1  GCAGTATGTCTGTCTGGACTAGAGGCGGCTGTCTTTCTGCCACTCGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGTCTGTCTGGACTAGAGGCGGCTGTCTTTCTGCCACTCGACCT  250

seq1  ACAGCTCCCCTGAACTGCTTTCTGAGTACTATTTCCAAAGCTAAACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCCCTGAACTGCTTTCTGAGTACTATTTCCAAAGCTAAACACAA  300

seq1  AGTCAGCCGTCAAAGCCCGTGGAAATACTGTGTGCTGCTGAAGCTCCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCGTCAAAGCCCGTGGAAATACTGTGTGCTGCTGAAGCTCCGTG  350

seq1  ACTACCCACTGGGCACGTTTTGTTCTGCTACACACAGCTCTCAGAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCACTGGGCACGTTTTGTTCTGCTACACACAGCTCTCAGAGCCTC  400

seq1  TTCATTCCTCCTGCCCCACCCTGTGCTTCTCTGTCTGCAGAGCTCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCTCCTGCCCCACCCTGTGCTTCTCTGTCTGCAGAGCTCTCAGC  450

seq1  CATTGCTAGATCTCTAGGTGCCTTTCTGGTCACAGATCCCTCACCCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTAGATCTCTAGGTGCCTTTCTGGTCACAGATCCCTCACCCATGT  500

seq1  TGCCTAGACCAGTGTGACACCCACGGCAGTGTCCCTGCCTTCATGCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGACCAGTGTGACACCCACGGCAGTGTCCCTGCCTTCATGCTCTC  550

seq1  TAAGAGCACACAGAACTGTACCTCTTTATCCCTTAGTGCCGAGCACATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACACAGAACTGTACCTCTTTATCCCTTAGTGCCGAGCACATAC  600

seq1  ATGAGACGAGTGACAGGAAGGAGAAAGTGAGCAGAGGGTTTTTTGTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACGAGTGACAGGAAGGAGAAAGTGAGCAGAGGGTTTTTTGTTTGG  650

seq1  TTGGTTTTTTGGTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCT  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTGGTTTTTGG-TTTTCAAGACAGGGTTTCTCTGTGTAGCCT  699

seq1  TGGTTGTCCTGGAACTCACTCTGTAGACAGGCTGGCCTCGAACTCAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCCTGGAACTCACTCTGTAGACAGGCTGGCCTCGAACTCAGAAA  749

seq1  TCCGCCTGCCTCTG-CCTCCCAAGTGCTGGGATTAAAGGCGTGAGCCACC  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCGCCTGCCTCTGCCCTCCCAAGTGCTGGGATTAAAGGCGTGAGCCACC  799

seq1  ACGCCTGGCTTAA-GTGAGCAGAGTTAAGAGGCAGTTTCAGA-GGACTTC  847
      ||||||||||||| |||||||||||| ||||||||||||||| |||||||
seq2  ACGCCTGGCTTAAGGTGAGCAGAGTT-AGAGGCAGTTTCAGAGGGACTTC  848

seq1  C-TCCTCCCATCTCCCAGTGCCATGGCCAACCGAGTGGGTCCTCCACAAT  896
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTCCTCCCATCTCCCAGTGCCATGGCCCACCGAGTGGGTCCTCCACAAT  898

seq1  GGCAAAGG--CTCCTCCAG-TCTGAGCCCCCGATCAGGCTAACATGGAAC  943
      ||||||||  ||||||||| ||||   ||||||||||||| |||||| ||
seq2  GGCAAAGGGCCTCCTCCAGTTCTGGAGCCCCGATCAGGCT-ACATGG-AC  946

seq1  GGAGCCCCACCTGACAGCACACAGCAGACAAGGACTGTGGTCAAGAAGTA  993
      |||||| |||||||||||||||||||||| |||||||| ||||   ||| 
seq2  GGAGCCTCACCTGACAGCACACAGCAGAC-AGGACTGT-GTCA--GAGT-  991

seq1  AATCCACTGCCTGTGGACTGCGGGGTGGCTGGGGTAAGGGTGTGTGGGTA  1043
      ||||||||||||||||||||| |||||||||| || |||||| |||||||
seq2  AATCCACTGCCTGTGGACTGC-GGGTGGCTGGTGT-AGGGTG-GTGGGTA  1038

seq1: chr12_100038615_100039693
seq2: B6Ng01-143E17.g_67_1124 (reverse)

seq1  AAGCAAGAGGCTCTTGACTCCTCCACTAAGGCAGGGACTGTGCTCCCCTG  50
      ||||||||| |   ||||| ||||| ||||||||||||||      ||||
seq2  AAGCAAGAGTC---TGACT-CTCCA-TAAGGCAGGGACTG----GTCCTG  41

seq1  AAAGGGACAGTGGCCCAGAGCACTTCCAACCACAAGATGAACAGGTCCCA  100
      ||||||||||| |||||| |||  ||||  ||| ||||| ||| ||||||
seq2  AAAGGGACAGT-GCCCAG-GCA--TCCA--CAC-AGATG-ACA-GTCCCA  82

seq1  GTGACAGA-GCAAAGGACACTTTACATCCAAATCTGCCCTGAAACCACCT  149
      |||||||| ||||||||||| |||||| |||||||| ||||||| |||||
seq2  GTGACAGAGGCAAAGGACAC-TTACAT-CAAATCTG-CCTGAAA-CACCT  128

seq1  GGATGTGGTTTTTCACTTCCCCTTCTTTGCCGATAACACACGTGAGGTGC  199
      ||||| || |||||| |||||| |||||||||||||||||| ||||||||
seq2  GGATG-GGGTTTTCAATTCCCC-TCTTTGCCGATAACACACTTGAGGTGC  176

seq1  AGGAGGAAGC-ACTAGGAGGCTCAGCTTTGT-CGCTTGCAGTGGTGACAA  247
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  AGGAGGAAGCAACTAGGAGGCTCAGCTTTGTCCGCTTGCAGTGGTGACAA  226

seq1  GCACACAGCCAATGAAGCCTTGGAGAATAGGAATGATCCAAGGATGCCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGCCAATGAAGCCTTGGAGAATAGGAATGATCCAAGGATGCCAA  276

seq1  CACTGCAGTAATGACCTCATTCACTTTCTGCCACACCTTAATGGTTAAAG  347
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACTGCAGTAATGACCTCATTCACTTTCTGGCACACCTTAATGGTTAAAG  326

seq1  GATCAGACTTTTAAAGAGATGATTTATGTCCTTGACAGGGACTTGTAATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGACTTTTAAAGAGATGATTTATGTCCTTGACAGGGACTTGTAATG  376

seq1  ACTGTCGGGTTACAGTTCCCAGTCAGTATTAATGCTGTTTATGAATACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCGGGTTACAGTTCCCAGTCAGTATTAATGCTGTTTATGAATACAC  426

seq1  AGTAAGACAAATTCAAGATCACACCATCACACAGCACTTTAACAGACATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACAAATTCAAGATCACACCATCACACAGCACTTTAACAGACATA  476

seq1  CTGCACCAAATGCAACAGCAAGCATCGTCTGCATCCGGGCATCCTCCAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCAAATGCAACAGCAAGCATCGTCTGCATCCGGGCATCCTCCAGG  526

seq1  CTGCTCAGAAGTCCCTTTTTGCTGAGAAGAGCCCTTCCTGCCAGGGTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGAAGTCCCTTTTTGCTGAGAAGAGCCCTTCCTGCCAGGGTCCA  576

seq1  GAACTTCACGTGCTTTATACCCACAGAGACAAACTGGGTATCTGAATCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCACGTGCTTTATACCCACAGAGACAAACTGGGTATCTGAATCTG  626

seq1  GTCGAAATTCTGCTACAAAAATACGTTGGTTGTGCCCACCTCTGCTGGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAATTCTGCTACAAAAATACGTTGGTTGTGCCCACCTCTGCTGGCA  676

seq1  ATTTTGGCCCCTGGTACAGAAGACACAACAAAATTTTCCAGGTTAGTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGCCCCTGGTACAGAAGACACAACAAAATTTTCCAGGTTAGTATA  726

seq1  AGAAGTAAGCTAATTAACAGACTTAACAGTTTCCTCAAATTGCATAGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAGCTAATTAACAGACTTAACAGTTTCCTCAAATTGCATAGTTT  776

seq1  AAAACAATTACTTAACAATCACATGGCCTATAATCACAGTATATACATGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTACTTAACAATCACATGGCCTATAATCACAGTATATACATGT  826

seq1  TCATAGTGATATATTTAATGGGCTATTCTGTGACAATTTAGAGGACATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGATATATTTAATGGGCTATTCTGTGACAATTTAGAGGACATTT  876

seq1  TAAGGACCATACATTTTTCTATATGGCTCCATTAATTTCTCATAGAAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACCATACATTTTTCTATATGGCTCCATTAATTTCTCATAGAAATT  926

seq1  AAGTGTTCTGTCTAGAGTGTGTCAGGGAATTTATTTTATTGGGTTTCCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCTGTCTAGAGTGTGTCAGGGAATTTATTTTATTGGGTTTCCAT  976

seq1  TCCAAATCCTGGCACTCTGGGGAGATAGAAGCAAGTGGATCTTTGTGAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATCCTGGCACTCTGGGGAGATAGAAGCAAGTGGATCTTTGTGAAT  1026

seq1  CTGAAGCCAGGTAGTATGTATGCAGTGAATTC  1079
      ||||||||||||||||||||||||||||||||
seq2  CTGAAGCCAGGTAGTATGTATGCAGTGAATTC  1058