BAC Information

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BAC

Clone NameB6Ng01-143G01
Chromosome12 (Build37)
Map Location 56,759,495 - 56,934,310
singlet/doubletdoublet
Overlap geneGarnl1
Upstream geneEapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2
Downstream geneBrms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143G01.bB6Ng01-143G01.g
ACCDH941327DH941328
length1,157959
definitionDH941327|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G01, 5' end.DH941328|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,759,495 - 56,760,666)(56,933,588 - 56,934,310)
sequence
gaattcacttacatgcagaattaaaaaaaatcaaatacataaactataat
aaaagccaggtttgttttgatatacacctataatcccactactcaagaga
ctgggcaataggaacatgaattcagggacagtttgagctgcacagcaaaa
ctatgtctacaaataaacaaacagaaaacaagtgacatgtaacaaatgaa
caacaacaacaacaaactataccaaaaataataattcagttgatgaagtc
ggagaaaggcataaagatacaaaatagcaggtttataggttaacaaatct
aggaatttaatgttaaaaaggattggttcaatagtgagaccgtaacctac
aatcgtatcattgttgtttattaaaggaaaacccaatttactacacaaca
atcctggttttgaagatggcattggttaaagaaacaaactctttacctac
caacagggctccaccaactggatgttagtattttacatgattttcttaac
taatatgctttaattaaaaatgtttcccctcagcacttacttttttggtc
agagagtcatcagaatcagaaggcattcgtgtagatacatgaaatattac
ttctactgtcgaggtagcaaaatagggagtggtcagtccagtgcttctgt
tcttctgaaggcctcccatgaagccacagtggtttgtaaggtttacctgc
aatcagtgaagaactacttaaacatcatcatcaccgtcatcaccaccacc
ttagaaacactgttgaaaaagaacaaagttcactttacaaaaccatgaga
agtacagttttttcattctgctatattctcagatgagtgccttgctcagt
accattagagaagcttcctcctgcagcgcatgggaacaaatagagatcca
ctgtcggactatgtgcagagagtgagagacatccgaacactcagtcctaa
gtaggtgtctcatcacatctctccctcaagcctcagtgaacccacagaag
agaaggagaaagagtgtagagccagttgacaccagaaaaacatgtcttct
taatcagtagactgaccacatatgactccagagaacgatgcagcatgcac
aggctgaactaaatggggtcttgagcttaaagaatgaacatgtaccccca
tccctaa
gaattctgggctatctagccagctgaaccagtgagttctgggtacaagag
agagagagcctacctcaatgtctatggaggagagcaatagagaaagatgt
tcaatatcaacttctggtcttgataagtacctacagacacatgtgaacat
acatacctgtgttggctggtcttatgtcaagttgacacacaaactaaagg
tatctaaaaggagagaaacttaactgagaaaatgcctccataagacatgg
ttgtagagcattttcttaattagttatcaatgggggagggcccagtccat
tgtgggtggtctcagccctgagctggtggtcctgggagctataagaaagc
aggctgagtgagccaggggaagcaagccagtaagctgcacccttccatgg
cctttgaatcagctcctgcctccagctccctgccctgcttgagttcctat
cctgacttctttaacatggatatagaagtgtaggccaaataaaccccctt
cctcctcaacttgctttttggttctggtgttttgttacagccatagaaaa
acctaagacaataccatgcatactacccccaaaaagttttaaatttttcc
tattttttaagattttacttttacttatgtgttcaagtttatccctgatt
ttatccttcctgtgttttccctgcagaacctacagtggtttggttttgtt
gttgttgttgttgctatgttatctattaatttatttattttgtgagtgtt
gctattcatttattttatttatttatttacttacttacttatttagtgag
tctctctgtataactctggatggctagaacacaatgatgcagaccaggct
ggcctcacactcacagagatcacctgccattatttcctacactctgatgc
tagatgaaagagccagccaccagctcaattatagtgtcctttaactatag
atatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56759495_56760666
seq2: B6Ng01-143G01.b_48_1204

seq1  GAATTCACTTACATGCAGAATTAAAAAAAATCAAATACATAAACTATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACATGCAGAATTAAAAAAAATCAAATACATAAACTATAAT  50

seq1  AAAAGCCAGGTTTGTTTTGATATACACCTATAATCCCACTACTCAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAGGTTTGTTTTGATATACACCTATAATCCCACTACTCAAGAGA  100

seq1  CTGGGCAATAGGAACATGAATTCAGGGACAGTTTGAGCTGCACAGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAATAGGAACATGAATTCAGGGACAGTTTGAGCTGCACAGCAAAA  150

seq1  CTATGTCTACAAATAAACAAACAGAAAACAAGTGACATGTAACAAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTACAAATAAACAAACAGAAAACAAGTGACATGTAACAAATGAA  200

seq1  CAACAACAACAACAAACTATACCAAAAATAATAATTCAGTTGATGAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAACAAACTATACCAAAAATAATAATTCAGTTGATGAAGTC  250

seq1  GGAGAAAGGCATAAAGATACAAAATAGCAGGTTTATAGGTTAACAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGGCATAAAGATACAAAATAGCAGGTTTATAGGTTAACAAATCT  300

seq1  AGGAATTTAATGTTAAAAAGGATTGGTTCAATAGTGAGACCGTAACCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTAATGTTAAAAAGGATTGGTTCAATAGTGAGACCGTAACCTAC  350

seq1  AATCGTATCATTGTTGTTTATTAAAGGAAAACCCAATTTACTACACAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTATCATTGTTGTTTATTAAAGGAAAACCCAATTTACTACACAACA  400

seq1  ATCCTGGTTTTGAAGATGGCATTGGTTAAAGAAACAAACTCTTTACCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGTTTTGAAGATGGCATTGGTTAAAGAAACAAACTCTTTACCTAC  450

seq1  CAACAGGGCTCCACCAACTGGATGTTAGTATTTTACATGATTTTCTTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGCTCCACCAACTGGATGTTAGTATTTTACATGATTTTCTTAAC  500

seq1  TAATATGCTTTAATTAAAAATGTTTCCCCTCAGCACTTACTTTTTTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGCTTTAATTAAAAATGTTTCCCCTCAGCACTTACTTTTTTGGTC  550

seq1  AGAGAGTCATCAGAATCAGAAGGCATTCGTGTAGATACATGAAATATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCATCAGAATCAGAAGGCATTCGTGTAGATACATGAAATATTAC  600

seq1  TTCTACTGTCGAGGTAGCAAAATAGGGAGTGGTCAGTCCAGTGCTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGTCGAGGTAGCAAAATAGGGAGTGGTCAGTCCAGTGCTTCTGT  650

seq1  TCTTCTGAAGGCCTCCCATGAAGCCACAGTGGTTTGTAAGGTTTACCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAAGGCCTCCCATGAAGCCACAGTGGTTTGTAAGGTTTACCTGC  700

seq1  AATCAGTGAAGAACTACTTAAACATCATCATCACCGTCATCACCACCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGAAGAACTACTTAAACATCATCATCACCGTCATCACCACCACC  750

seq1  TTAGAAACACTGTTGAAAAAGAACAAAGTTCACTTTACAAAACCATGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACACTGTTGAAAAAGAACAAAGTTCACTTTACAAAACCATGAGA  800

seq1  AGTACAGTTTTTTCATTCTGCTATATTCTCAGATGAGTGCCTTGCTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTTTTTTCATTCTGCTATATTCTCAGATGAGTGCCTTGCTCAGT  850

seq1  ACCATTAGAGAAGCTTCCTCCTGCAGCGCATGGGAACAAATAGAGATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAGAGAAGCTTCCTCCTGCAGCGCATGGGAACAAATAGAGATCCA  900

seq1  CTGTCGGACTATGTGCAGAGAGTGAGAGACATCCGAACACTCAGTCCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGGACTATGTGCAGAGAGTGAGAGACATCCGAACACTCAGTCCTAA  950

seq1  GTAGGTTGTCTCCATCACATCTCTCCCCTCAAGCCTCAGTGAACCCCACA  1000
      ||||| ||||| |||||||||||| |||||||||||||||||| ||||||
seq2  GTAGG-TGTCT-CATCACATCTCT-CCCTCAAGCCTCAGTGAA-CCCACA  996

seq1  GAAGAGAAGGGAGAAAGAGTGTAAGAGCCAGTGGACACCAAGAAAACAAG  1050
      |||||||| ||||||||||||| ||||||||| |||||| ||||||  | 
seq2  GAAGAGAA-GGAGAAAGAGTGT-AGAGCCAGTTGACACC-AGAAAAACAT  1043

seq1  GTCTTCTAAATCAGTAAGACTGACCCACATATGAACTCACAGAGACCGAG  1100
      ||||||| ||||||| ||||||| ||||||||| |||| |||||| ||| 
seq2  GTCTTCTTAATCAGT-AGACTGA-CCACATATG-ACTC-CAGAGAACGAT  1089

seq1  GCAGCATGCACAGGGCCTGAACTAGATGGGGTCCTAGAGCTAAAAGAAAT  1150
      ||||||||||||||  |||||||| ||||||| || ||||| |||| |||
seq2  GCAGCATGCACAGG--CTGAACTAAATGGGGT-CTTGAGCTTAAAG-AAT  1135

seq1  GGACATGTACCCCCATCCCTAA  1172
      | ||||||||||||||||||||
seq2  GAACATGTACCCCCATCCCTAA  1157

seq1: chr12_56933588_56934310
seq2: B6Ng01-143G01.g_304_1024 (reverse)

seq1  CACACATATCTAATAGTTAAAGGACACTATAATTGGAGCCTGGTGGCTGG  50
      ||||||||||| |||||||||||||||||||||| ||| |||||||||||
seq2  CACACATATCT-ATAGTTAAAGGACACTATAATT-GAG-CTGGTGGCTGG  47

seq1  CTCTTTCATCTTAGCATTCAGAGTGTAGGAAATAATGGCAGGTGATCTCT  100
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  CTCTTTCATC-TAGCA-TCAGAGTGTAGGAAATAATGGCAGGTGATCTCT  95

seq1  GTGAGTGTGAGGCCAGCCTGGTCTGCATCA-TGTGTTCTAGCCATCCAGA  149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGAGTGTGAGGCCAGCCTGGTCTGCATCATTGTGTTCTAGCCATCCAGA  145

seq1  GTTATACAGAGAGACTCACTAAATAAGTAAGTAAGTAAATAAATAAAT-A  198
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTATACAGAGAGACTCACTAAATAAGTAAGTAAGTAAATAAATAAATAA  195

seq1  AATAAATGAATAGCAACACTCACAAAATAAATAAATTAATAGATAACATA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGAATAGCAACACTCACAAAATAAATAAATTAATAGATAACATA  245

seq1  GCAACAACAACAACAACAAAACC-AACCACTGTAGGTTCTGCAGGGAAAA  297
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCAACAACAACAACAACAAAACCAAACCACTGTAGGTTCTGCAGGGAAAA  295

seq1  CACAGGAAGGATAAAATCAGGGATAAACTTGAACACATAAGTAAAAGTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGGATAAAATCAGGGATAAACTTGAACACATAAGTAAAAGTAA  345

seq1  AATCTTAAAAAATAGGAAAAATTTAAAACTTTTTGGGGGTAGTATGCATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAAAAATAGGAAAAATTTAAAACTTTTTGGGGGTAGTATGCATG  395

seq1  GTATTGTCTTAGGTTTTTCTATGGCTGTAACAAAACACCAGAACCAAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTCTTAGGTTTTTCTATGGCTGTAACAAAACACCAGAACCAAAAA  445

seq1  GCAAGTTGAGGAGGAAGGGGGTTTATTTGGCCTACACTTCTATATCCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGAGGAGGAAGGGGGTTTATTTGGCCTACACTTCTATATCCATG  495

seq1  TTAAAGAAGTCAGGATAGGAACTCAAGCAGGGCAGGGAGCTGGAGGCAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGTCAGGATAGGAACTCAAGCAGGGCAGGGAGCTGGAGGCAGG  545

seq1  AGCTGATTCAAAGGCCATGGAAGGGTGCAGCTTACTGGCTTGCTTCCCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTCAAAGGCCATGGAAGGGTGCAGCTTACTGGCTTGCTTCCCCT  595

seq1  GGCTCACTCAGCCTGCTTTCTTATAGCTCCCAGGACCACCAGCTCAGGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTCAGCCTGCTTTCTTATAGCTCCCAGGACCACCAGCTCAGGGC  645

seq1  TGAGACCACCCACAATGGACTGGGCCCTCCCCCATTGATAACTAATTAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCACCCACAATGGACTGGGCCCTCCCCCATTGATAACTAATTAAG  695

seq1  AAAATGCTCTACAACCATGTCTTATG  723
      ||||||||||||||||||||||||||
seq2  AAAATGCTCTACAACCATGTCTTATG  721