BAC Information

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BAC

Clone NameB6Ng01-143K11
Chromosome12 (Build37)
Map Location 31,914,201 - 32,053,117
singlet/doubletdoublet
Overlap geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781
Downstream geneLOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143K11.bB6Ng01-143K11.g
ACCDH941533DH941534
length1,0061,094
definitionDH941533|Mus musculus domesticus DNA, BAC clone: B6Ng01-143K11, 5' end.DH941534|Mus musculus domesticus DNA, BAC clone: B6Ng01-143K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,914,201 - 31,915,222)(32,052,007 - 32,053,117)
sequence
gaattctcgaggtgaagtaaatgaataatggcatatttatctaatctggt
atgttaatatcttatcttagaaaagaagcagatggtctgttaagacttga
ggaaatgctgaacaggttgcagcaagctctaatgaccgcaggccaggcaa
ctcagtcctcacactgctgagataacaaacaaaaagaacaatgtggggca
ggtatgttatctcctccaacacaacctgaaatcaattctgaagctagaaa
cacaattggttttgcatatgagaatatcattcttaccccgcctgactgat
agaattgtaatgcagaaaccttgaggtgatattggtgtgattatgcactt
atttaacgttctacatcaatgctgataattttgttactgatagaattatg
caacggattattgtactatagaactcttcttttttttttttttttttttt
tttttaatccaagacagagtttttctgtgtgtagccctagctgtcctgga
actctctctgtagaccaggctggtctcaaactcagaaatcttcctgcctc
tgcctcccaagtgctgggattaaaggcatgcgccaaccctgggacagggt
taggtggatgcacatagtatatgctactgtcggcttaggacattaagact
cagagaagttatgtgactctcgggtccacacagctagtgaacagtactga
cttgtggacacagtttgagagttttgattgagaataaacctgaaaagtcg
caagccacactactaaacagggctcctggttacaagtggcttatcctgag
taaggctggaaggagactcagtttgatgtctcagcagcagccccgtttca
accatgggatgacacaggacgaagaagcttaacccctcgtgtaatggatc
ttcaccttctggacaccattgtgtccctccttacgagtcagagtgctggg
ccccaagtctcagctgtattagaacagcatctgagaagaaaagcaggagg
tagaaa
gaattcatgctcaagacacagggctgcccaaggcaggacacttcaccaat
ccagctttctttgacctcctgtctggctccttattttctttatgtctgtg
ccatttatctgatgtacagctgacatttgctttgcccattcctcccatcc
taagcccagaactagtccttcactcagccagatctcatttccttggtcaa
ccacccagaagaaaatccactgataagccattacacaaaatcccaaataa
ataaagaataaaaaccctctggcagagcgctcagcacatctgctcaacgg
atgctcattctatctgcctcttttccccaaaggggaatttggagccaccc
ccgggacttacgagagaacatttggaaaaggaataatagaaatgactctt
aatgggatgatttcaagacaggaattaagggcgagattgggtggagtaga
actattttgggccaagggtcattttgaggattcctcaagttccacaatgt
gggcatctcctgttctgtctttgcccagtgaagcttgtgttacagccttt
caaggccttgtagctggcttgggtgtttctcttctatatagataagaatt
gtgggagctataaaaggggctgcttggccccttctctctctcttaccctc
ttgtctctcttactcttttgttttgttttgttttgtttttttgagacagg
gtttctctgtgtagccctggccgtcctggaactcacttcgtagaccaggc
tggcctcgaactcagaaatctgcctgcctctgcctcccaagtgctgggat
taaaggcatgagtcaccactccttcccttttccctttccctctctctctc
ccacgtggtcacggctggcctctacttctctactctctccttctctctgc
ctctactactctcttactcacttcccatatcctaataactctatctatac
acacacacacaacacaccacacactcacaacacaccaagatttgttggag
agtagaagcttttccaatgttgtggtgggaatactagctcttaagtgcca
tgcctgagctgatggctagaccagggccatagatatctaagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_31914201_31915222
seq2: B6Ng01-143K11.b_46_1051

seq1  GAATTCTCGAGGTGAAGTAAATGAATAATGGCATATTTATCTAATCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGAGGTGAAGTAAATGAATAATGGCATATTTATCTAATCTGGT  50

seq1  ATGTTAATATCTTATCTTAGAAAAGAAGCAGATGGTCTGTTAAGACTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATATCTTATCTTAGAAAAGAAGCAGATGGTCTGTTAAGACTTGA  100

seq1  GGAAATGCTGAACAGGTTGCAGCAAGCTCTAATGACCGCAGGCCAGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCTGAACAGGTTGCAGCAAGCTCTAATGACCGCAGGCCAGGCAA  150

seq1  CTCAGTCCTCACACTGCTGAGATAACAAACAAAAAGAACAATGTGGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCTCACACTGCTGAGATAACAAACAAAAAGAACAATGTGGGGCA  200

seq1  GGTATGTTATCTCCTCCAACACAACCTGAAATCAATTCTGAAGCTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTATCTCCTCCAACACAACCTGAAATCAATTCTGAAGCTAGAAA  250

seq1  CACAATTGGTTTTGCATATGAGAATATCATTCTTACCCCGCCTGACTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTGGTTTTGCATATGAGAATATCATTCTTACCCCGCCTGACTGAT  300

seq1  AGAATTGTAATGCAGAAACCTTGAGGTGATATTGGTGTGATTATGCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTAATGCAGAAACCTTGAGGTGATATTGGTGTGATTATGCACTT  350

seq1  ATTTAACGTTCTACATCAATGCTGATAATTTTGTTACTGATAGAATTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACGTTCTACATCAATGCTGATAATTTTGTTACTGATAGAATTATG  400

seq1  CAACGGATTATTGTACTATAGAACTCTTCTTTTTTTTTTTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGATTATTGTACTATAGAACTCTTCTTTTTTTTTTTTTTTTTTTTT  450

seq1  TTTTTAATCCAAGACAGAGTTTTTCTGTGTGTAGCCCTAGCTGTCCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATCCAAGACAGAGTTTTTCTGTGTGTAGCCCTAGCTGTCCTGGA  500

seq1  ACTCTCTCTGTAGACCAGGCTGGTCTCAAACTCAGAAATCTTCCTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTGTAGACCAGGCTGGTCTCAAACTCAGAAATCTTCCTGCCTC  550

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCAACCCTGGGACAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCAACCCTGGGACAGGGT  600

seq1  TAGGTGGATGCACATAGTATATGCTACTGTCGGCTTAGGACATTAAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGATGCACATAGTATATGCTACTGTCGGCTTAGGACATTAAGACT  650

seq1  CAGAGAAGTTATGTGACTCTCGGGTCCACACAGCTAGTGAACAGTACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGTTATGTGACTCTCGGGTCCACACAGCTAGTGAACAGTACTGA  700

seq1  CTTGTGGACACAGTTTGAGAGTTCTGATTGAGAATAAACCTGAAAAGTCG  750
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGTGGACACAGTTTGAGAGTTTTGATTGAGAATAAACCTGAAAAGTCG  750

seq1  CAAGCCACACTACTAAACAGGGCTCCTGGTTACAAGGTGGCTTATCCTGA  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAGCCACACTACTAAACAGGGCTCCTGGTTACAA-GTGGCTTATCCTGA  799

seq1  GTAAGGCTGGAAGGAGATCTCAGGTTGGATGTCTCAGCAGCAAGCCCCGT  850
      ||||||||||||||||| |||| ||| |||||||||||||| ||||||||
seq2  GTAAGGCTGGAAGGAGA-CTCA-GTTTGATGTCTCAGCAGC-AGCCCCGT  846

seq1  TTCAACCATGGGATGACACAGGACGAAGAAGGCTTAACCCCTCGGTGTAA  900
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  TTCAACCATGGGATGACACAGGACGAAGAA-GCTTAACCCCTC-GTGTAA  894

seq1  TGGATCCTTCACCTTCTGGACACCA-TGTGTCCCTCCTTACAGAGGTCAG  949
      ||||| ||||||||||||||||||| ||||||||||||||| || |||||
seq2  TGGAT-CTTCACCTTCTGGACACCATTGTGTCCCTCCTTAC-GA-GTCAG  941

seq1  AGTTGCTGGGCCCCCAAGTCTCAGCTGTATTTACAGAACAGGCATCCTGA  999
      || ||||||| ||||||||||||||||||||   |||||| |||| ||||
seq2  AG-TGCTGGG-CCCCAAGTCTCAGCTGTATT---AGAACA-GCAT-CTGA  984

seq1  GAAGAAAAGCAGGAGGGAAGAAA  1022
      |||||||||||||| || |||||
seq2  GAAGAAAAGCAGGA-GGTAGAAA  1006

seq1: chr12_32052007_32053117
seq2: B6Ng01-143K11.g_69_1162 (reverse)

seq1  ACTCTTAGGATCTATAAGCCCCTGGGTCTAGCCATCAGGCCTCTAGGCCC  50
      ||||||| ||| | || | |||| ||||||||||||||  ||| |||  |
seq2  ACTCTTA-GATATCTATGGCCCT-GGTCTAGCCATCAG--CTC-AGG--C  43

seq1  TGGGCACTTAAGAGCCTAGTATTCCCAACACAACATTGGAAAAGCTTCTT  100
        |||||||||||| |||||||||||| |||||||||||||||||||| |
seq2  ATGGCACTTAAGAG-CTAGTATTCCCACCACAACATTGGAAAAGCTTC-T  91

seq1  ACTCCTCCCACAATTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  150
      ||| |||| |||| |||| |||||| |||| ||||||| |||||| ||||
seq2  ACT-CTCCAACAAATCTTGGTGTGT-TGTGAGTGTGTG-GTGTGT-TGTG  137

seq1  TGTGTGTGTATAGAATAGAGTTTATTTAGGATATGGGGAAGTGAGTTAAG  200
      ||||||||||||| ||||||||   ||||||||| |||||||||| ||||
seq2  TGTGTGTGTATAG-ATAGAGTT--ATTAGGATAT-GGGAAGTGAG-TAAG  182

seq1  AGAGTAGTAGAGGCAGAGAGAAGGAGAGAGTAGAGAAGTAGAGGCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGTAGAGGCAGAGAGAAGGAGAGAGTAGAGAAGTAGAGGCCAGCC  232

seq1  GTGACCACGT-GGAGAGAGAGAGGGAAAGGGGAAAGGGAAGGAGTGGTGA  299
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  GTGACCACGTGGGAGAGAGAGAGGGAAAGGGAAAAGGGAAGGAGTGGTGA  282

seq1  CTCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTG  332

seq1  AGTTCGAGGCCAGCCTGGTCTACGAAGTGAGTTCCAGGACGGCCAGGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAGGCCAGCCTGGTCTACGAAGTGAGTTCCAGGACGGCCAGGGCT  382

seq1  ACACAGAGAAACCCTGTCTCAAAAAAACAAAACAAAACAAAACAAAAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTCTCAAAAAAACAAAACAAAACAAAACAAAAGAG  432

seq1  TAAGAGAGACAAGAGGGTAAGAGAGAGAGAAGGGGCCAAGCAGCCCCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGACAAGAGGGTAAGAGAGAGAGAAGGGGCCAAGCAGCCCCTTT  482

seq1  TATAGCTCCCACAATTCTTATCTATATAGAAGAGAAACACCCAAGCCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTCCCACAATTCTTATCTATATAGAAGAGAAACACCCAAGCCAGC  532

seq1  TACAAGGCCTTGAAAGGCTGTAACACAAGCTTCACTGGGCAAAGACAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGCCTTGAAAGGCTGTAACACAAGCTTCACTGGGCAAAGACAGAA  582

seq1  CAGGAGATGCCCACATTGTGGAACTTGAGGAATCCTCAAAATGACCCTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATGCCCACATTGTGGAACTTGAGGAATCCTCAAAATGACCCTTG  632

seq1  GCCCAAAATAGTTCTACTCCACCCAATCTCGCCCTTAATTCCTGTCTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAATAGTTCTACTCCACCCAATCTCGCCCTTAATTCCTGTCTTGA  682

seq1  AATCATCCCATTAAGAGTCATTTCTATTATTCCTTTTCCAAATGTTCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCCCATTAAGAGTCATTTCTATTATTCCTTTTCCAAATGTTCTCT  732

seq1  CGTAAGTCCCGGGGGTGGCTCCAAATTCCCCTTTGGGGAAAAGAGGCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGTCCCGGGGGTGGCTCCAAATTCCCCTTTGGGGAAAAGAGGCAGA  782

seq1  TAGAATGAGCATCCGTTGAGCAGATGTGCTGAGCGCTCTGCCAGAGGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGCATCCGTTGAGCAGATGTGCTGAGCGCTCTGCCAGAGGGTT  832

seq1  TTTATTCTTTATTTATTTGGGATTTTGTGTAATGGCTTATCAGTGGATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTATTTATTTGGGATTTTGTGTAATGGCTTATCAGTGGATTT  882

seq1  TCTTCTGGGTGGTTGACCAAGGAAATGAGATCTGGCTGAGTGAAGGACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGGTGGTTGACCAAGGAAATGAGATCTGGCTGAGTGAAGGACTA  932

seq1  GTTCTGGGCTTAGGATGGGAGGAATGGGCAAAGCAAATGTCAGCTGTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGCTTAGGATGGGAGGAATGGGCAAAGCAAATGTCAGCTGTACA  982

seq1  TCAGATAAATGGCACAGACATAAAGAAAATAAGGAGCCAGACAGGAGGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAAATGGCACAGACATAAAGAAAATAAGGAGCCAGACAGGAGGTC  1032

seq1  AAAGAAAGCTGGATTGGTGAAGTGTCCTGCCTTGGGCAGCCCTGTGTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGCTGGATTGGTGAAGTGTCCTGCCTTGGGCAGCCCTGTGTCTT  1082

seq1  GAGCATGAATTC  1111
      ||||||||||||
seq2  GAGCATGAATTC  1094