BAC Information

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BAC

Clone NameB6Ng01-143L09
Chromosome12 (Build37)
Map Location 39,455,191 - 39,629,112
singlet/doubletdoublet
Overlap geneLOC100043142, Etv1, LOC100043145
Upstream geneLOC100043139, Dgkb, LOC668824
Downstream geneLOC100043148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143L09.bB6Ng01-143L09.g
ACCDH941576DH941577
length1,1341,009
definitionDH941576|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L09, 5' end.DH941577|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,627,963 - 39,629,112)(39,455,191 - 39,455,720)
sequence
gaattccagtgtttaaggattgctatgtagttttgaagttggtatattgt
ctggaatatggtgaaagttgtcatttatattaggtgtttattgattagaa
gagaatcacaatctctaggataaatgctgatatatcaaggaatgttgcaa
agtaaaaataaaaaagaatgtgtaaagtgttaatgagtgcaaaatgtagt
aattatatacaaacaaaacaagacttaaagaataaatagctatctaggat
acaaggaatataagagattgaagactgtgatataagtcttcaagacatat
atggtagaagagagctgactcctgaaattttctagtgatacctacatatg
tgctctggcacagacaggtaaacacacatatacagacatatatacacaca
caaaatgggtagggagagagagtgggactaaataaatagtttaataactt
ttttaaaatttcatatggattggtattttttaataagttctgcttagttt
tacgtatttttatctttattatctcctatgcaagtaagtggtcttattct
gagatctggacacctgatgtctcatatttctaacttcgcattattctagc
ttcgtgattccaaagacaactacaggttactcagcagcacttcctaaaag
atttattaggtattctgatcaaacggccttcgttatatgtaaccctcttc
attaaaaactgaagcacaaagatggatcaacttaatgatgtagcaagtct
cttagtatctcatgggaaccagaggtgtttgctaaggaaacttggttttt
agactctaaagttacatctagtgctgtggcctccaaaggctctctttgat
gctacacaggagaaaaaacaattgctgtgatttgctggagacacaaaggt
ctttgcaaccacaaatgtctagggaaaacagaaatattaaacacccagtg
tatctcctcatagaggagataaattactgcattccactcagaagctggga
gtgcagtggtagatctggtgactttagctatctcttagagactcactact
tttgctactgtagaagcagaaccacaccctaattccagatgttttatctc
agctttcttccagaccttatctttgctctcagtt
gaattcaggaacgtttgggggcaatttaggaatgtagtgcagtggaaact
ccctggaatctatgagtgaccctagagaagacccatagtagtggggaata
gggagcctaaatgagcctttgtttttgaccaaacaaggttcccagcggtg
gaagtgggacatcaacccaaccttagatttataatctgtccatctgtaag
atgtgctggggtaattaggtggaaaagaacttgtgggcttggccaaccaa
tcaatgacaagcctagcttgagacctataccatgtgaaggagcccacacc
tgacagtgtttggatttccaggccaaaaatggtgaaagaaattattacta
ataatattatgctatactcatctatttgtgcctatcgcaactgtcatcaa
agacctgtcatctaacaactgatgagagaagatgcagagacccacagcta
aatttagatgaagtcagagcattcctgcagaaggtggggaggaagacctg
taggaaccagaggggtcaaggacatcacaagaacactgctcacagaatca
attaagcaggtcccataggggctcacgggaactaaatcaagaaacacaga
ccctatatgagtctgagctgggtcctgtgcatatactttatggttgcata
gcttagtgttctttttggactcctaacagtggtcggtgggtcatctctct
gactcttttccctgctttcaggaccctttacttcctactggattacatca
tccatccttgataggagatatgtgcctagtcttattgcaatttgttttac
catgcttgtctgatatccctggaggcctgctcttttacatgaagggaaac
tggtgtagaagtggatcttggaaaagaagaaattggaggagggaaataga
gaagtggatgagagtaactatgctagcgtataattataagagaatgaaat
atatgtcacaccatacaaatatttcatgccaaatacaaaacttcagatta
ttaagttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_39627963_39629112
seq2: B6Ng01-143L09.b_43_1176 (reverse)

seq1  AACTGAGAGCCAAAGATAAGTTCTTGGGAAGAAAGACTGAGATAAACATT  50
      ||||||||| |||||||||| |||  ||||||||| ||||||||||   |
seq2  AACTGAGAG-CAAAGATAAGGTCT--GGAAGAAAG-CTGAGATAAAACAT  46

seq1  CTGGGAATTTTGGGTGTGG-TCTGCCTCTACAGGTAGCCAAAAGTAGGTG  99
      ||||  | || |||||||| ||||| |||||| |||| |||||||| |||
seq2  CTGG--AATTAGGGTGTGGTTCTGCTTCTACA-GTAG-CAAAAGTA-GTG  91

seq1  AGGTCTCCTATAGAGATAGCTAAAGGTCACCAGATCTACCACTGCCACTC  149
      | |||| ||| ||||||||||||| ||||||||||||||||||| |||||
seq2  A-GTCT-CTA-AGAGATAGCTAAA-GTCACCAGATCTACCACTG-CACTC  136

seq1  CCAGCTTTCTGAGTGGAATGCAGGTAATTTATCTCCTCTATTGAGGAGAT  199
      ||||| |||||||||||||||| ||||||||||||||||| |||||||||
seq2  CCAGC-TTCTGAGTGGAATGCA-GTAATTTATCTCCTCTA-TGAGGAGAT  183

seq1  ACACCTGGGTGTTTAATATTTCTGTTTTCCCTAGACATTTGTGGTTGCAA  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACA-CTGGGTGTTTAATATTTCTGTTTTCCCTAGACATTTGTGGTTGCAA  232

seq1  AGACCTTTGTGTCTCCAGCAAATCACAGCAATTG-TTTTTCTCCTGTGTA  298
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGACCTTTGTGTCTCCAGCAAATCACAGCAATTGTTTTTTCTCCTGTGTA  282

seq1  GCATCAAAGAGAGCCTTTGGAGGCCACAGCACTAGATGTAACTTTAGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAAGAGAGCCTTTGGAGGCCACAGCACTAGATGTAACTTTAGAGT  332

seq1  CTAAAAACCAAGTTTCCTTAGCAAACACCTCTGGTTCCCATGAGATACTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACCAAGTTTCCTTAGCAAACACCTCTGGTTCCCATGAGATACTA  382

seq1  AGAGACTTGCTACATCATTAAGTTGATCCATCTTTGTGCTTCAGTTTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTTGCTACATCATTAAGTTGATCCATCTTTGTGCTTCAGTTTTTA  432

seq1  ATGAAGAGGGTTACATATAACGAAGGCCGTTTGATCAGAATACCTAATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGGGTTACATATAACGAAGGCCGTTTGATCAGAATACCTAATAA  482

seq1  ATCTTTTAGGAAGTGCTGCTGAGTAACCTGTAGTTGTCTTTGGAATCACG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAGGAAGTGCTGCTGAGTAACCTGTAGTTGTCTTTGGAATCACG  532

seq1  AAGCTAGAATAATGCGAAGTTAGAAATATGAGACATCAGGTGTCCAGATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAATAATGCGAAGTTAGAAATATGAGACATCAGGTGTCCAGATC  582

seq1  TCAGAATAAGACCACTTACTTGCATAGGAGATAATAAAGATAAAAATACG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATAAGACCACTTACTTGCATAGGAGATAATAAAGATAAAAATACG  632

seq1  TAAAACTAAGCAGAACTTATTAAAAAATACCAATCCATATGAAATTTTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTAAGCAGAACTTATTAAAAAATACCAATCCATATGAAATTTTAA  682

seq1  AAAAGTTATTAAACTATTTATTTAGTCCCACTCTCTCTCCCTACCCATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATTAAACTATTTATTTAGTCCCACTCTCTCTCCCTACCCATTT  732

seq1  TGTGTGTGTATATATGTCTGTATATGTGTGTTTACCTGTCTGTGCCAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATATATGTCTGTATATGTGTGTTTACCTGTCTGTGCCAGAG  782

seq1  CACATATGTAGGTATCACTAGAAAATTTCAGGAGTCAGCTCTCTTCTACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGTAGGTATCACTAGAAAATTTCAGGAGTCAGCTCTCTTCTACC  832

seq1  ATATATGTCTTGAAGACTTATATCACAGTCTTCAATCTCTTATATTCCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTCTTGAAGACTTATATCACAGTCTTCAATCTCTTATATTCCTT  882

seq1  GTATCCTAGATAGCTATTTATTCTTTAAGTCTTGTTTTGTTTGTATATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTAGATAGCTATTTATTCTTTAAGTCTTGTTTTGTTTGTATATAA  932

seq1  TTACTACATTTTGCACTCATTAACACTTTACACATTCTTTTTTATTTTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACATTTTGCACTCATTAACACTTTACACATTCTTTTTTATTTTTA  982

seq1  CTTTGCAACATTCCTTGATATATCAGCATTTATCCTAGAGATTGTGATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAACATTCCTTGATATATCAGCATTTATCCTAGAGATTGTGATTC  1032

seq1  TCTTCTAATCAATAAACACCTAATATAAATGACAACTTTCACCATATTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAATCAATAAACACCTAATATAAATGACAACTTTCACCATATTCC  1082

seq1  AGACAATATACCAACTTCAAAACTACATAGCAATCCTTAAACACTGGAAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATATACCAACTTCAAAACTACATAGCAATCCTTAAACACTGGAAT  1132

seq1  TC  1150
      ||
seq2  TC  1134

seq1: chr12_39455191_39455720
seq2: B6Ng01-143L09.g_564_1078

seq1  GACCTGTAGGAACCAGAGGGGTCAAGGACATCACAAGAACACTGCTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTAGGAACCAGAGGGGTCAAGGACATCACAAGAACACTGCTCACA  50

seq1  GAATCAATTAAGCAGGTCCCATAGGGGCTCACGGGAACTAAATCAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAATTAAGCAGGTCCCATAGGGGCTCACGGGAACTAAATCAAGAAA  100

seq1  CACAGACCCTATATGAGTCTGAGCTGGGTCCTGTGCATATACTTTATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACCCTATATGAGTCTGAGCTGGGTCCTGTGCATATACTTTATGGT  150

seq1  TGCATAGCTTAGTGTTCTTTTTGGACTCCTAACAGTGGTCGGTGGGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGCTTAGTGTTCTTTTTGGACTCCTAACAGTGGTCGGTGGGTCAT  200

seq1  CTCTCTGACTCTTTTCCCTGCTTTCAGGACCCTTTACTTCCTACTGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGACTCTTTTCCCTGCTTTCAGGACCCTTTACTTCCTACTGGATT  250

seq1  ACATCATCCATCCTTGATAGGAGATATGTGCCTAGTCTTATTGCAAATTG  300
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATCATCCATCCTTGATAGGAGATATGTGCCTAGTCTTATTGCAATTTG  300

seq1  TTTTACCATGCTTGTCTGATATCCCTGGGAGGCCTGCTCTTTTACATGAA  350
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTACCATGCTTGTCTGATATCCCT-GGAGGCCTGCTCTTTTACATGAA  349

seq1  GGGAAACTGGTGTAGAAGTGGATCTTGGAAAAGGAAGAAATTGGGAGGAG  400
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  GGGAAACTGGTGTAGAAGTGGATCTTGGAAAA-GAAGAAATT-GGAGGAG  397

seq1  GGAAATAGAGAAGTGGAAGGAGAGTAAACTATGCTAGCGTATAAATTATA  450
      |||||||||||||||| | |||||| |||||||||||||||| |||||||
seq2  GGAAATAGAGAAGTGG-ATGAGAGT-AACTATGCTAGCGTAT-AATTATA  444

seq1  AAAGAGGAATGAAAATATATGTACACACACATACAAAATAATTTCATGCA  500
      | |   ||||| |||||||||| ||||| ||||||||   ||||||||| 
seq2  AGA---GAATG-AAATATATGT-CACAC-CATACAAA--TATTTCATGCC  486

seq1  AAATACAAAACTTTCAGATTATTAAGTTCT  530
      ||||||||||| ||||||||||||||||||
seq2  AAATACAAAAC-TTCAGATTATTAAGTTCT  515