BAC Information

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BAC

Clone NameB6Ng01-143L18
Chromosome12 (Build37)
Map Location 104,134,655 - 104,307,995
singlet/doubletdoublet
Overlap geneCox8c, 9030205A07Rik, LOC667269
Upstream geneTrip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678
Downstream genePrima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143L18.bB6Ng01-143L18.g
ACCDH941593DH941594
length702923
definitionDH941593|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L18, 5' end.DH941594|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,134,655 - 104,135,355)(104,307,083 - 104,307,995)
sequence
gaattcttataagcccactatatcagaaacatagatgaacttgcttgtgt
ttttctacgatgtcagaatttattgtttaacaaataaattcacatagtgt
cttagttagggtttcattgctgtgaacagacaccatgaccaaggcaagtc
ttataaagggcaacatttaatcggggctggcttacagtttcagaggttca
gtccattatcatcacagctgtaagcttgtcagtctgcaggcagacacagt
gctggaggagccaagagttctacatcttgatccaaaggcagatagaagaa
gattctcttctgcaggcagctaggagaagggtctttccacactgggtgga
gcttgagcatagcacctcaaagtcgacccccacaatgacatactttctcc
aacaaggccacacttcctccaataaggccacatctcctaatagtgtcatt
ctctatggccaaacatttaaaccaccacacacaatatggtggcctcattg
ggagcaatttgccagatgccccctgttttccttgatagcctaggcccagg
taaatacacattcttttatcccaacctcaattattaatattaactctcat
atcacacgttacataccatacagtaagtcatcaagtcatcacctgtgtat
ctatgtatgtatgaatgtatgtatgtatgtatgtatgtatgaatgtatgt
aa
gaattccaaagaggctgcattaacttccacttccgcccacagaacaggag
ggctcccctcccccacacccatggcagcatttgttgtcacagatactcct
gaggacggccattctgacgtgtgcgagactgaagggggagaggggaaagg
gcacacggagaggactgtcggttcgaggcaaggtttttctgtacagctct
ggctgtcctggaacttgctctgtagaacaggctggcctcgaactcacaaa
gatccttgagtgctgaaattaagggcgtgtgccatcaccatcaagaggtt
tgaatctgcatctccataatgactgaggatgtcaaatactttttaaaatg
ttggctggccatttgtgtttcttttttttgagaactttccactaagctcc
ataatgaaaaggaagcacagttataggaaggtacagatattgatcgtgga
ctgaatctaagctattctgccatggatttctggagcctatgtgagttgta
attccaaagttctagtcttactgtgatgagcagcaatgaaaattactctt
ttaaaagctagattagcatgcagctgctcctgtctgcagagagacacgct
tcctcctgccacacacaccctgtactgcgggtttttctttatggacaagc
acaggtacagaataccactcttctctactcctcatattctgccatggcca
ttttttaaaaaaaacaaaagatgttctagcataattaaatccatgaacaa
aaaaaggatgcatttgggaggggctaagggtatattcggcgaccaagcct
tgcctgggcatgcatgataccctaggttcattccacaacactgaaagaaa
gaagaaagaaagaagaaagaaagaaagaaagagaggagagagagagaaga
gagagagtgaggtgtggaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104134655_104135355
seq2: B6Ng01-143L18.b_45_745

seq1  GAATTCTTATAAGCCCACTATATCAGAAACATAGATGAACTTGCTTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATAAGCCCACTATATCAGAAACATAGATGAACTTGCTTGTGT  50

seq1  TTTTCTACGATGTCAGAATTTATTGTTTAACAAATAAATTCACATAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACGATGTCAGAATTTATTGTTTAACAAATAAATTCACATAGTGT  100

seq1  CTTAGTTAGGGTTTCATTGCTGTGAACAGACACCATGACCAAGGCAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTAGGGTTTCATTGCTGTGAACAGACACCATGACCAAGGCAAGTC  150

seq1  TTATAAAGGGCAACATTTAATCGGGGCTGGCTTACAGTTTCAGAGGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGGGCAACATTTAATCGGGGCTGGCTTACAGTTTCAGAGGTTCA  200

seq1  GTCCATTATCATCACAGCTGTAAGCTTGTCAGTCTGCAGGCAGACACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTATCATCACAGCTGTAAGCTTGTCAGTCTGCAGGCAGACACAGT  250

seq1  GCTGGAGGAGCCAAGAGTTCTACATCTTGATCCAAAGGCAGATAGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGGAGCCAAGAGTTCTACATCTTGATCCAAAGGCAGATAGAAGAA  300

seq1  GATTCTCTTCTGCAGGCAGCTAGGAGAAGGGTCTTTCCACACTGGGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTTCTGCAGGCAGCTAGGAGAAGGGTCTTTCCACACTGGGTGGA  350

seq1  GCTTGAGCATAGCACCTCAAAGTCGACCCCCACAATGACATACTTTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCATAGCACCTCAAAGTCGACCCCCACAATGACATACTTTCTCC  400

seq1  AACAAGGCCACACTTCCTCCAATAAGGCCACATCTCCTAATAGTGTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCCACACTTCCTCCAATAAGGCCACATCTCCTAATAGTGTCATT  450

seq1  CTCTATGGCCAAACATTTAAACCACCACACACAATATGGTGGCCTCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGCCAAACATTTAAACCACCACACACAATATGGTGGCCTCATTG  500

seq1  GGAGCAATTTGCCAGATGCCCCCTGTTTTCCTTGATAGCCTAGGCCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAATTTGCCAGATGCCCCCTGTTTTCCTTGATAGCCTAGGCCCAGG  550

seq1  TAAATACACATTCTTTTATCCCAACCTCAATTATTAATATTAACTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACACATTCTTTTATCCCAACCTCAATTATTAATATTAACTCTCAT  600

seq1  ATCACACGTTACATACCATACAGTAAGTCATCAAGTCATCACCTGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACGTTACATACCATACAGTAAGTCATCAAGTCATCACCTGTGTAT  650

seq1  CTATGTATGTATGAATGTATGTATGTATGTATGTATGTATGAATGTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATGTATGAATGTATGTATGTATGTATGTATGTATGAATGTATGT  700

seq1  A  701
      |
seq2  A  701

seq1: chr12_104307083_104307995
seq2: B6Ng01-143L18.g_70_976 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCT  50
      |||||||||| |||||||||||| ||||||||||||||||||||| ||||
seq2  CTCTCTCTCT-TCTCTCTCTCTC-CTCTCTTTCTTTCTTTCTTTC-TTCT  47

seq1  TTCTTTCTTTCTTTCTTTCTGGTGTTGTGGAATGAACCTAGGGTATCATG  100
      ||||||| |||||||||||  |||||||||||||||||||||||||||||
seq2  TTCTTTC-TTCTTTCTTTC-AGTGTTGTGGAATGAACCTAGGGTATCATG  95

seq1  CATG-CCAGGCAAGGCCTTGGTCGCCGAATTATACCCCTTAGCCCCT-CC  148
      |||| |||||||||| ||||||||||||| |||| |||||||||||| ||
seq2  CATGCCCAGGCAAGG-CTTGGTCGCCGAA-TATA-CCCTTAGCCCCTCCC  142

seq1  AAATGCATCCTTTTTTTGTTCATGGATTTAATTATGCTAGAACATCTTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATCCTTTTTTTGTTCATGGATTTAATTATGCTAGAACATCTTTT  192

seq1  GTTTTTTTTAAAAAATGGCCATGGCAGAATATGAGGAGTAGAGAAGAGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTAAAAAATGGCCATGGCAGAATATGAGGAGTAGAGAAGAGTG  242

seq1  GTATTCTGTACCTGTGCTTGTCCATAAAGAAAAACCCGCAGTACAGGGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGTACCTGTGCTTGTCCATAAAGAAAAACCCGCAGTACAGGGTG  292

seq1  TGTGTGGCAGGAGGAAGCGTGTCTCTCTGCAGACAGGAGCAGCTGCATGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCAGGAGGAAGCGTGTCTCTCTGCAGACAGGAGCAGCTGCATGC  342

seq1  TAATCTAGCTTTTAAAAGAGTAATTTTCATTGCTGCTCATCACAGTAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGCTTTTAAAAGAGTAATTTTCATTGCTGCTCATCACAGTAAGA  392

seq1  CTAGAACTTTGGAATTACAACTCACATAGGCTCCAGAAATCCATGGCAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTTTGGAATTACAACTCACATAGGCTCCAGAAATCCATGGCAGA  442

seq1  ATAGCTTAGATTCAGTCCACGATCAATATCTGTACCTTCCTATAACTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTAGATTCAGTCCACGATCAATATCTGTACCTTCCTATAACTGTG  492

seq1  CTTCCTTTTCATTATGGAGCTTAGTGGAAAGTTCTCAAAAAAAAGAAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTCATTATGGAGCTTAGTGGAAAGTTCTCAAAAAAAAGAAACA  542

seq1  CAAATGGCCAGCCAACATTTTAAAAAGTATTTGACATCCTCAGTCATTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCCAGCCAACATTTTAAAAAGTATTTGACATCCTCAGTCATTAT  592

seq1  GGAGATGCAGATTCAAACCTCTTGATGGTGATGGCACACGCCCTTAATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCAGATTCAAACCTCTTGATGGTGATGGCACACGCCCTTAATTT  642

seq1  CAGCACTCAAGGATCTTTGTGAGTTCGAGGCCAGCCTGTTCTACAGAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCAAGGATCTTTGTGAGTTCGAGGCCAGCCTGTTCTACAGAGCA  692

seq1  AGTTCCAGGACAGCCAGAGCTGTACAGAAAAACCTTGCCTCGAACCGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAGAGCTGTACAGAAAAACCTTGCCTCGAACCGACA  742

seq1  GTCCTCTCCGTGTGCCCTTTCCCCTCTCCCCCTTCAGTCTCGCACACGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTCCGTGTGCCCTTTCCCCTCTCCCCCTTCAGTCTCGCACACGTC  792

seq1  AGAATGGCCGTCCTCAGGAGTATCTGTGACAACAAATGCTGCCATGGGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCCGTCCTCAGGAGTATCTGTGACAACAAATGCTGCCATGGGTG  842

seq1  TGGGGGAGGGGAGCCCTCCTGTTCTGTGGGCGGAAGTGGAAGTTAATGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGGGAGCCCTCCTGTTCTGTGGGCGGAAGTGGAAGTTAATGCA  892

seq1  GCCTCTTTGGAATTC  913
      |||||||||||||||
seq2  GCCTCTTTGGAATTC  907