BAC Information

Click to search

BAC

Clone NameB6Ng01-143L22
Chromosome12 (Build37)
Map Location 88,242,527 - 88,242,997
singlet/doubletsinglet
Overlap genenone
Upstream geneTtll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik
Downstream gene2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143L22.bB6Ng01-143L22.g
ACCDH941601DH941602
length874665
definitionDH941601|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L22, 5' end.DH941602|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataattactgttagtttctttaccgttctatttttcatagactc
tctagagaaatagggaagagcttaagtgtactaagctctcattttttaaa
agggtattttacttttgacaggtcaaacgtaagaagtaggtatcttaaat
tcagaatccttttcatcatgttaagactatcttgatatctaaccatttcc
aattgcattttattaatgtagcccatgaaatattgggctatatgtatacc
tcttagtaccactatgctgtatcttgtcagatatcctgaagacttgaagt
cagatgaccagctgaattcatggcctgtgcggggaaaacatggcaatgtg
atttttctttctttcttttttttttcaattaaaggctgaaaacatttatt
ttttaaaaatgtaaattaattaattaaaatttaaaaatatttttattagg
tattttcttcatttacatttccaatggtattccaaatgtcccccataccc
tcccccctactcccctacccacccactcccactttttggacctggcattc
ccctgtactggggcatagaaagtttgcaagtccaatgggcctctctttct
attgatggccgactaggccatcttttgatacatatgcagctagagtcaag
agctcagaggtactggttagttcataattgttggttccacctataggggt
gcagatccctttagctccttgggtgctctctctagctccttcctttgggg
gccctgtgatccatccaatagctgactgtgagcatccacttctgtgtttg
ccaggccctgcatagtctcactagagacagctctatctgggtccttcaac
aaatcttgttagtgtgtgcatggt
gaattcacatggtatacactcactgacaagtgaatatcagccctaaaact
cgtaatatccaagatacaattcatagaccatatgaagctcaagaagaagg
aagaccaaagtgtggatacgttagtccttaatagaagggggaacaaaata
tccaagggataatatacaaagacaaagcgtggaacagagatggaaggaaa
ggccatctagacactgacccacctggggatccatcccatatacaggtccc
aaacccagacaccattgtggatgccaagaaatgcttcctgacaggatcct
gatatagctgtccccagaaatgctctaccagtgcctgacaggtacagagg
tggatgctcacagacaatcattggactgaacacagggtccccagtggagg
agttagagaaaggcctgaaggagttgaaggggtttgcagtcctatacgag
aaacaacaatgtcaaccaactagacccccttgagttcccactaaaccacc
aaccaaagagtacacatggaggaacccatgactccatttgcttatgtagc
agaagatatccttgttgtacatcattgagaggagaggcccttggtccttt
gaaggcttgatgccctagtgtaggagaataccaggctagggaagcgggag
tgggtgggtgggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_88242527_88242997
seq2: B6Ng01-143L22.b_407_920

seq1  ---------------------------------CTTTTTTTTTT-----T  12
                                        ||| ||||||     |
seq2  CTTTCTTTTTTTTTTCAATTAAAGGCTGAAAACATTTATTTTTTAAAAAT  50

seq1  TTCAATTAATT--TT----TTTAAAAATATTTTTATTAGGTATTTTCCTC  56
       | ||||||||  ||    |||||||||||||||||||||||||||| ||
seq2  GTAAATTAATTAATTAAAATTTAAAAATATTTTTATTAGGTATTTTCTTC  100

seq1  ATTTACATTTCCAATGCTATCCCAAAAGCCCCCCATACCCTCCCCCCGAC  106
      |||||||||||||||| ||| ||||| | |||||||||||||||||| ||
seq2  ATTTACATTTCCAATGGTATTCCAAATGTCCCCCATACCCTCCCCCCTAC  150

seq1  TCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTTCCCTTTACTG  156
      ||||||||||||||||||||||||||||| |||||| || |||| |||||
seq2  TCCCCTACCCACCCACTCCCACTTTTTGGACCTGGCATTCCCCTGTACTG  200

seq1  GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCTAGTGATGACC  206
      ||||||| ||||||||||||||||||||||||||||||||| ||||| ||
seq2  GGGCATAGAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCTATTGATGGCC  250

seq1  GACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGG  256
      ||||||||||||||||||||||||||||||||||| ||||||||| | ||
seq2  GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCAGAGG  300

seq1  TACTGGTTAGTTCAT-ATTGTT-GTTCCACCTATAGGGTTGCAGTTCCCT  304
      ||||||||||||||| |||||| ||||||||||||||| ||||| |||||
seq2  TACTGGTTAGTTCATAATTGTTGGTTCCACCTATAGGGGTGCAGATCCCT  350

seq1  ATAGCTCCTTGGGTAATTTCTCTAGCTCC-TCCATTGGGGGCCCTGTGAT  353
       |||||||||||||  | ||||||||||| ||| ||||||||||||||||
seq2  TTAGCTCCTTGGGTGCTCTCTCTAGCTCCTTCCTTTGGGGGCCCTGTGAT  400

seq1  CCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCA  403
      ||||||||||||||||||||||||||||||||||||||||| ||| ||| 
seq2  CCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGG-CCCT  449

seq1  GCCTAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAGCAAAATCTT  453
      || ||||||||| ||||||||||  |||||||||| |||| | |||||||
seq2  GCATAGTCTCACTAGAGACAGCTCTATCTGGGTCC-TTCAAC-AAATCTT  497

seq1  GCTAGTGTATGCAATGGT  471
      | |||||| ||| |||||
seq2  GTTAGTGTGTGC-ATGGT  514