BAC Information

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BAC

Clone NameB6Ng01-144F01
Chromosome12 (Build37)
Map Location 87,389,053 - 87,501,724
singlet/doubletdoublet
Overlap geneTtll5, Tgfb3, 1700019E19Rik
Upstream geneYlpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream gene1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144F01.bB6Ng01-144F01.g
ACCDH942025DH942026
length1,1431,058
definitionDH942025|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F01, 5' end.DH942026|Mus musculus domesticus DNA, BAC clone: B6Ng01-144F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,389,053 - 87,390,228)(87,500,652 - 87,501,724)
sequence
gaattcagctgtggtgtgaatcagccaccaatacaacgctggagcttgtg
tttgctctccagggtgtgctggcctgacagtaccagaacactcaggctca
cagccatcaactgctccctagccccagtggagaaaatggaatagaaagag
aagattgccagggtctgttcaagtcataacacgtgtgctccacgaccatt
taagactttttttctaacagtacattgtggtcttactttaaaggccactt
tggtctctgttttttccttccgaccttcgtctggcacttgaaaccccact
tttctgaccttcagggacagatctgtacccagtggcctctgtgattcaat
ggtgctatgtctacaacaggaggacgaggctggagttttacagatgcaga
gtcgctgttctagaatgcaggagaatccctactagtggcagtcggtctgc
tcttttgaactcaactgcataaactccatctcaaagcccactaaagattt
actacaatgagctaaaaacatgtcaaatagcattaaagccaaagttgaaa
gagttataaatagcaaaaacaagattataggcttccttttgaaatggctc
agtgggtaaaggcacttgtcaccaagctcagttacctgagctcagggtag
aaggaaggagctgctccctcaggctgtccgctgacctccacgtgaccatg
acatgaacatgcacaaaagtaaatgtgaagaaatgtttcagtcagattga
aggccagttctgcttgttccttgccaccacagaatggctgtaagagagtc
agaactctttataaaataattattcttacagagattattctacaattttt
tttgttgagatagggtttcattgtgcaaccctggctagcctgaaacgcac
taggatccaccagcctctggctcccaagtcctgaaattaaaagcgtgcac
taccacacccagccgcaaatctaaatttgtatatgtggacagaaataatc
agatatactagtagattgtgcttcaaactgacatccaagatagatcagag
ttaatagatcagctatgcatttatttcataaaggtagatttaaatatcct
atgctaaaaaaataaaaggctgccatgtaaatgacttcctctg
gaattctcagctcctcccgcaccgcgccttccctgccatgcttcctgcca
tgatgataatggacagaacctctgaacctgtgagccagccccaatgaaat
gtttgcctttataagagtcgccttggtcatggtgtctcttcatagcaata
gaaactgtaactaagacatcagggaaggggcccggggtggatctccatgg
agaatgtttacatctctcagcccttggaacatggcttctaggagggcaga
tgagggtgaaaccagtgggcttggcacagtcagacacagaaatgacagtg
tgtggtgtcacaagcagaagagatgcagatctacacacgtactagctcca
gagagcagttatcccatgtgcatggttacctctggaggacactttggtca
gagaacccactcctgacactgtcagagatcagggctgccactggccaggc
ccactgtgacactagttcagtggtcccactctctccaggaggttttcctc
tcggaactcttcagacacattacagacatgtgcagagatatgaggctgcc
cccccccccccccgcatcagcctaacaatgtcacacaaacaggagagaag
tgagagacaggtctgtcacttcattagggcaatatgcttaagttgccaaa
gagtgtccagaaagataaagatacatttcctccaaatgactatcaaaggc
cagtttagggttgtttgtttgtttgtttgtttgaattgatcagagcaaag
aaaaaaagaggtggggcaagaagaaaaaccacacaggggaggcgttccta
ggaccctaaaccaactgcagatatataaccaagaggtcatcccagaagga
aggccagcacttccatgggctagatgcaattttatttccaaagcggcaca
ggccattccagaacagctggtagattcctgccacttctgcctcgtcatta
ttcagatgctgtgactgctctagtcagctagccagagtacataaatgttt
tttttactatttcacagcagcttcagactcattgtaccaggaggaagtga
gcccagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87389053_87390228
seq2: B6Ng01-144F01.b_44_1186

seq1  GAATTCAGCTGTGGTGTGAATCAGCCACCAATACAACGCTGGAGCTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTGGTGTGAATCAGCCACCAATACAACGCTGGAGCTTGTG  50

seq1  TTTGCTCTCCAGGGTGTGCTGGCCTGACAGTACCAGAACACTCAGGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTCCAGGGTGTGCTGGCCTGACAGTACCAGAACACTCAGGCTCA  100

seq1  CAGCCATCAACTGCTCCCTAGCCCCAGTGGAGAAAATGGAATAGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCAACTGCTCCCTAGCCCCAGTGGAGAAAATGGAATAGAAAGAG  150

seq1  AAGATTGCCAGGGTCTGTTCAAGTCATAACACGTGTGCTCCACGACCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGCCAGGGTCTGTTCAAGTCATAACACGTGTGCTCCACGACCATT  200

seq1  TAAGACTTTTTTTCTAACAGTACATTGTGGTCTTACTTTAAAGGCCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTTTTTTCTAACAGTACATTGTGGTCTTACTTTAAAGGCCACTT  250

seq1  TGGTCTCTGTTTTTTCCTTCCGACCTTCGTCTGGCACTTGAAACCCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTGTTTTTTCCTTCCGACCTTCGTCTGGCACTTGAAACCCCACT  300

seq1  TTTCTGACCTTCAGGGACAGATCTGTACCCAGTGGCCTCTGTGATTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACCTTCAGGGACAGATCTGTACCCAGTGGCCTCTGTGATTCAAT  350

seq1  GGTGCTATGTCTACAACAGGAGGACGAGGCTGGAGTTTTACAGATGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTATGTCTACAACAGGAGGACGAGGCTGGAGTTTTACAGATGCAGA  400

seq1  GTCGCTGTTCTAGAATGCAGGAGAATCCCTACTAGTGGCAGTCGGTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTGTTCTAGAATGCAGGAGAATCCCTACTAGTGGCAGTCGGTCTGC  450

seq1  TCTTTTGAACTCAACTGCATAAACTCCATCTCAAAGCCCACTAAAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAACTCAACTGCATAAACTCCATCTCAAAGCCCACTAAAGATTT  500

seq1  ACTACAATGAGCTAAAAACATGTCAAATAGCATTAAAGCCAAAGTTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATGAGCTAAAAACATGTCAAATAGCATTAAAGCCAAAGTTGAAA  550

seq1  GAGTTATAAATAGCAAAAACAAGATTATAGGCTTCCTTTTGAAATGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATAAATAGCAAAAACAAGATTATAGGCTTCCTTTTGAAATGGCTC  600

seq1  AGTGGGTAAAGGCACTTGTCACCAAGCTCAGTTACCTGAGCTCAGGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAAAGGCACTTGTCACCAAGCTCAGTTACCTGAGCTCAGGGTAG  650

seq1  AAGGAAGGAGCTGCTCCCTCAGGCTGTCCGCTGACCTCCACGTGACCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAGCTGCTCCCTCAGGCTGTCCGCTGACCTCCACGTGACCATG  700

seq1  ACATGAACATGCACAAAAGTAAATGTGAAGAAATGTTTCAGTCAGATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAACATGCACAAAAGTAAATGTGAAGAAATGTTTCAGTCAGATTGA  750

seq1  AGGCCAGTTCTGCTTGTTCCTTGCCACCACAGAATGGCTGTAAGAGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTTCTGCTTGTTCCTTGCCACCACAGAATGGCTGTAAGAGAGTC  800

seq1  AGAACTCTTTATAAAATAATTATTCTTACAGAGATTATTCTACAATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTTTATAAAATAATTATTCTTACAGAGATTATTCTACAATTTTT  850

seq1  TTTGTTGAGATAGGGTTTCATTGTGCAACCCTGGCTAGCCTGAAACGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAGATAGGGTTTCATTGTGCAACCCTGGCTAGCCTGAAACGCAC  900

seq1  TAGGATCCACCAGCCTCTGGCTCCCAAGTCCTGAAATTAAAGGCGTGCAC  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGGATCCACCAGCCTCTGGCTCCCAAGTCCTGAAATTAAAAGCGTGCAC  950

seq1  TACCACACCCAGCCGCAAATCTAAATTTGTATATGTGGACAGAAATAATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACCCAGCCGCAAATCTAAATTTGTATATGTGGACAGAAATAATC  1000

seq1  AGATATACTTAGGTAGATTGTGCTTCAAAACTGACATCACAGAATTAGAA  1050
      |||||||||   |||||||||||||| |||||||||||  |||  ||| |
seq2  AGATATACT--AGTAGATTGTGCTTC-AAACTGACATCCAAGA--TAG-A  1044

seq1  TCCAAGAGGTTTAATTTAGATCAGCTATGCAATTTTTAAATTTTCATAAA  1100
      ||  ||||  ||||  |||||||||||||||   ||||   |||||||||
seq2  TC--AGAG--TTAA--TAGATCAGCTATGCA---TTTA---TTTCATAAA  1082

seq1  AGGGTAGATATTAAATATCCTTATGCTAAAAAAAAATAAAAAGGGCTGCC  1150
        ||||||| |||||||||| ||||||  ||||||||||||  |||||||
seq2  --GGTAGAT-TTAAATATCC-TATGCT--AAAAAAATAAAA--GGCTGCC  1124

seq1  CCATATGTAAAATAGACTTCCCTCTG  1176
          |||||||   ||||| ||||||
seq2  ----ATGTAAA--TGACTT-CCTCTG  1143

seq1: chr12_87500652_87501724
seq2: B6Ng01-144F01.g_64_1121 (reverse)

seq1  TCCTGTGCTCACTCTCCCTTCCTGGGTACAATGAGTCTGAAGCCTGCTGT  50
      ||||| ||||||| |||  |||| |||||||||||||||||| |||||||
seq2  TCCTGGGCTCACT-TCC--TCCT-GGTACAATGAGTCTGAAG-CTGCTGT  45

seq1  TGGAAATAGTAATAAAGACATTTATGTACTCTTGGCTTAGCTTGACTAGA  100
        |||||||||| ||| |||||||||||||| |||| |||| ||||||||
seq2  --GAAATAGTAAAAAAAACATTTATGTACTC-TGGC-TAGC-TGACTAGA  90

seq1  GCAGTCACAGCATCTGAATAATGACGAGGCCAGAAGTGGCAGGAATCTTA  150
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  GCAGTCACAGCATCTGAATAATGACGAGG-CAGAAGTGGCAGGAATC-TA  138

seq1  CCAGCTGTTCTTGGAATGGCCCTGTGCCGCTTTTGGAAATAAAATTGCAT  200
      |||||||||| |||||||| |||||||||| |||||||||||||||||||
seq2  CCAGCTGTTC-TGGAATGG-CCTGTGCCGC-TTTGGAAATAAAATTGCAT  185

seq1  CTAGCCCATGGAAGTGCTGGCCTTCCTTCTGGGATGACCTCTTGGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCATGGAAGTGCTGGCCTTCCTTCTGGGATGACCTCTTGGTTATA  235

seq1  TATCTGCAGTTGGTTTAGGGTCCTAGGAACGCCTCCCCTGTGTGGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAGTTGGTTTAGGGTCCTAGGAACGCCTCCCCTGTGTGGTTTTT  285

seq1  CTTCTTGCCCCACCTCTTTTTTTCTTTGCTCTGATCAATTCAAACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCCCCACCTCTTTTTTTCTTTGCTCTGATCAATTCAAACAAACA  335

seq1  AACAAACAAACAACCCTAAACTGGCCTTTGATAGTCATTTGGAGGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAACCCTAAACTGGCCTTTGATAGTCATTTGGAGGAAATG  385

seq1  TATCTTTATCTTTCTGGACACTCTTTGGCAACTTAAGCATATTGCCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATCTTTCTGGACACTCTTTGGCAACTTAAGCATATTGCCCTAA  435

seq1  TGAAGTGACAGACCTGTCTCTCACTTCTCTCCTGTTTGTGTGACATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGACAGACCTGTCTCTCACTTCTCTCCTGTTTGTGTGACATTGTT  485

seq1  AGGCTGATGCGGGGGGGGGGGGGGGCAGCCTCATATCTCTGCACATGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATGCGGGGGGGGGGGGGGGCAGCCTCATATCTCTGCACATGTCT  535

seq1  GTAATGTGTCTGAAGAGTTCCGAGAGGAAAACCTCCTGGAGAGAGTGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTGTCTGAAGAGTTCCGAGAGGAAAACCTCCTGGAGAGAGTGGGA  585

seq1  CCACTGAACTAGTGTCACAGTGGGCCTGGCCAGTGGCAGCCCTGATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAACTAGTGTCACAGTGGGCCTGGCCAGTGGCAGCCCTGATCTCT  635

seq1  GACAGTGTCAGGAGTGGGTTCTCTGACCAAAGTGTCCTCCAGAGGTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTCAGGAGTGGGTTCTCTGACCAAAGTGTCCTCCAGAGGTAACC  685

seq1  ATGCACATGGGATAACTGCTCTCTGGAGCTAGTACGTGTGTAGATCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATGGGATAACTGCTCTCTGGAGCTAGTACGTGTGTAGATCTGCA  735

seq1  TCTCTTCTGCTTGTGACACCACACACTGTCATTTCTGTGTCTGACTGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGCTTGTGACACCACACACTGTCATTTCTGTGTCTGACTGTGC  785

seq1  CAAGCCCACTGGTTTCACCCTCATCTGCCCTCCTAGAAGCCATGTTCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCACTGGTTTCACCCTCATCTGCCCTCCTAGAAGCCATGTTCCAA  835

seq1  GGGCTGAGAGATGTAAACATTCTCCATGGAGATCCACCCCGGGCCCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGAGATGTAAACATTCTCCATGGAGATCCACCCCGGGCCCCTTC  885

seq1  CCTGATGTCTTAGTTACAGTTTCTATTGCTATGAAGAGACACCATGACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTCTTAGTTACAGTTTCTATTGCTATGAAGAGACACCATGACCA  935

seq1  AGGCGACTCTTATAAAGGCAAACATTTCATTGGGGCTGGCTCACAGGTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGACTCTTATAAAGGCAAACATTTCATTGGGGCTGGCTCACAGGTTC  985

seq1  AGAGGTTCTGTCCATTATCATCATGGCAGGAAGCATGGCAGGGAAGGCGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCTGTCCATTATCATCATGGCAGGAAGCATGGCAGGGAAGGCGC  1035

seq1  GGTGCGGGAGGAGCTGAGAATTC  1073
      |||||||||||||||||||||||
seq2  GGTGCGGGAGGAGCTGAGAATTC  1058