BAC Information

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BAC

Clone NameB6Ng01-144H12
Chromosome12 (Build37)
Map Location 119,716,178 - 119,874,651
singlet/doubletdoublet
Overlap geneLOC100042993, LOC668611
Upstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
Downstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144H12.bB6Ng01-144H12.g
ACCDH942139DH942140
length986965
definitionDH942139|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H12, 5' end.DH942140|Mus musculus domesticus DNA, BAC clone: B6Ng01-144H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,716,178 - 119,717,173)(119,873,673 - 119,874,651)
sequence
gaattcctatgacttgaggttgaaggtgtgagcactgcttcactcacacc
agatagttttcaaatgactatgttgtttatattcaacatcaaagcaaatt
taccttttttcttgcatagttttcttatttcatggtatgatttcagtcat
gtgatttgttatcattgactaaaattttgagcatatgttctctgtttcta
gtccccattggaactgctccataacagaatgtcaatccaggagtagagtt
ggtacttccttgtgaaagtatgagagtctagcaaagtccaggtgactgaa
ataaaaggcacataaatggactctacctgtgtgcaaaggctagcctaaga
ggcagagcactgctcatgagtagaagggagtttctgggaaaacgaccgag
acctgggcatctagcttagtggcttcacactacagtgaagccttgcacac
atgaaggtgtggtcatcttcactattagaaacgttaccttgggctggaga
gatggctcaatggttaagagcactgactgctcttccagagttcctgagtt
cagttcccagcaaccacacggtggctcacaaccatctgaaatggtatctg
atgccctcttctggtgtgtctgaagacagctacagtatactcatataaat
aaaataaatagatctttttaaaaagaaaaagaaatgttacctctactcta
atacacaggtgaggactgaagccctcaaggttctgtttctacaacctggg
tggaaaaaactttaggaagaaaatctagaagtcaggatggagtaatgttc
cacacagccaagatatcatctcattaagtttcaaattctttgctttgagg
aatactgttgttatcatgtacaaaggcatagcagcagcaacagcaatctg
ttggataaggatattacaacaaatggatggcgttgatcattaatagcagc
aaaacttgggaaccatcatattatcatgtgatatca
gaattccttgcaagatccaggtatcaacaagatataaaagcttcgtgatg
agtcttgtgccatgtaccctgaatctatggtctaagtatacatgtgaagg
ggtggagctatgagctgggatggagtgaagccagaaggagtagtgctata
ttttactagtgatggttccatatgaatgtatacagatccaaaactgcata
aggttatggacacactcactcaactgagcatgtaaaaaataagttaggtt
tcagtatggtataccaatgtgtcacgactgtctaatatcatactacagat
agtcgacaactgggttaaagacactgcaacctatcaccactggtttggca
accctctttgaatcagttatttcaaaacagaggcaacagtagaggctcca
agctggaatcattaatttggtgagtgtgctttgttttggattttgtgact
cacatggccacagagcagtaaatgtagctaaaagtatggatccatgatgc
ctttcacaaagccttttttattcacccacccctggaccacattcctgtga
gatgaggctctgtttctaggcactcagattcgttgaggtgaggatggatt
ttggttgtttacttggctggattcagaaatgccaaggattttaataagaa
catctctgactatgtctatttgcagagatagttatacaacaaaggctgtg
gctcaatgaatttaatatgttggtggagctataattgaatagactattcg
aagacaatagatctgtggaaagcagggcctagtagatcaagtagctcact
gatggaggtccatggaggctgtccttgctctgctctgcttctgtctcaca
atatgagatgtccgatgcacactccctgcacgtggactgaaatctctgaa
acatgactaaattatagtctgaagaagcttatttttgggattttgtcgca
tgacacagaagccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119716178_119717173
seq2: B6Ng01-144H12.b_41_1026

seq1  GAATTCCTATGACTTGAGGTTGAAGGTGTGAGCACTGCTTCACTCACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGACTTGAGGTTGAAGGTGTGAGCACTGCTTCACTCACACC  50

seq1  AGATAGTTTTCAAATGACTATGTTGTTTATATTCAACATCAAAGCAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTTTCAAATGACTATGTTGTTTATATTCAACATCAAAGCAAATT  100

seq1  TACCTTTTTTCTTGCATAGTTTTCTTATTTCAGCATATGATTTCAGTCAT  150
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  TACCTTTTTTCTTGCATAGTTTTCTTATTTCATGGTATGATTTCAGTCAT  150

seq1  GTGATTTGTTATCAGTGACTAAAATTTTGAGCATATGTTCTCTGTTTCTA  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGATTTGTTATCATTGACTAAAATTTTGAGCATATGTTCTCTGTTTCTA  200

seq1  GTCACCATTTGAACTGCACCATAACAGAATGTCAATCCAGGAGTAGAGTT  250
      ||| ||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  GTCCCCATTGGAACTGCTCCATAACAGAATGTCAATCCAGGAGTAGAGTT  250

seq1  GGTACTTCCTTGTGAAAGTATGAGAGTCTAGCAAAGTCCAGGTGACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTCCTTGTGAAAGTATGAGAGTCTAGCAAAGTCCAGGTGACTGAA  300

seq1  ATAAAAGGCACATAAATGGACTCTACCTGTGTGCAAAGGCTAGCCTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGCACATAAATGGACTCTACCTGTGTGCAAAGGCTAGCCTAAGA  350

seq1  GGCAGAGCACTGCTCATGAGTAGAAGGGAGTTTCTGGGAAAACGACCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCACTGCTCATGAGTAGAAGGGAGTTTCTGGGAAAACGACCGAG  400

seq1  ACCTGGGCATCTAGCTTAGTGGCTTCACACTAGAGTGAAGCCTTGCACAC  450
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCTGGGCATCTAGCTTAGTGGCTTCACACTACAGTGAAGCCTTGCACAC  450

seq1  ATGAAGGTGTGGTCATCTTCACTATTAGAAACGTTACCTTGGGCTGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTGTGGTCATCTTCACTATTAGAAACGTTACCTTGGGCTGGAGA  500

seq1  GATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGTTCCTGAGTT  550
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAATGGTTAAGAGCACTGACTGCTCTTCCAGAGTTCCTGAGTT  550

seq1  CAGTTCCCAGCAACCACACGGTGGCTCACAACCATCTGAAATGGTATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCAGCAACCACACGGTGGCTCACAACCATCTGAAATGGTATCTG  600

seq1  ATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTATACTCATATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTATACTCATATAAAT  650

seq1  AAAATAAATAGATCTTTTTAAAAAGAAAAAGAAATGTTACCTCTACTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAGATCTTTTTAAAAAGAAAAAGAAATGTTACCTCTACTCTA  700

seq1  ATACACAGGTGAGGACTGAAGCCCTCAAGGTTCTGTTTCTAGAACCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATACACAGGTGAGGACTGAAGCCCTCAAGGTTCTGTTTCTACAACCTGGG  750

seq1  TGGAAAAAACTTTAGGAAGAAAATCTTGAAGTCAGGTATGTAGTAATGTT  800
      |||||||||||||||||||||||||| ||||||||| ||| |||||||||
seq2  TGGAAAAAACTTTAGGAAGAAAATCTAGAAGTCAGG-ATGGAGTAATGTT  799

seq1  CCACAGTAGCCATGATATCATCTCAATAAAGCTTTCAAAATGCTTTGCTT  850
      |||||  ||||| |||||||||||| |||   |||| |||| ||||||||
seq2  CCACA-CAGCCAAGATATCATCTCATTAA--GTTTC-AAATTCTTTGCTT  845

seq1  TGAGGAGTACTGTTGTTTATCATGTACAAAGGCATAGCAGCAGCAACAGC  900
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGGAATACTGTTG-TTATCATGTACAAAGGCATAGCAGCAGCAACAGC  894

seq1  AATCTGTTGGTTAAGGATATTCAAAACAAATGGAT-GCCTTGATTATTAA  949
      |||||||||| |||||||||| | ||||||||||| || ||||| ||| |
seq2  AATCTGTTGGATAAGGATATT-ACAACAAATGGATGGCGTTGATCATT-A  942

seq1  ATACCAGTCAAAACTTGGGAAACATCATATTAACCATGGTGATATCA  996
      ||| ||| ||||||||||||| ||||||||| | ||| |||||||||
seq2  ATAGCAG-CAAAACTTGGGAACCATCATATT-ATCAT-GTGATATCA  986

seq1: chr12_119873673_119874651
seq2: B6Ng01-144H12.g_65_1029 (reverse)

seq1  ATGGCTTCTGTGTCATTGTGACAAAAATACCCAAAAATAAGCTTCTTAAG  50
      ||||||||||||||| || |||||||   |||||||||||||||||| ||
seq2  ATGGCTTCTGTGTCA-TGCGACAAAA--TCCCAAAAATAAGCTTCTTCAG  47

seq1  AATAGGAATTTTAGGTCATTGTTTCAGAGATTTCAGTCCACCGTGGCAGG  100
      | ||  |||||   |||| ||||||||||||||||||||| ||| |||||
seq2  ACTA-TAATTT--AGTCA-TGTTTCAGAGATTTCAGTCCA-CGT-GCAGG  91

seq1  GAGAGTGCCTCGGAACATCTCATATTGTGAAGACAGGAAGCAGAGCAGAG  150
      ||| |||| |||| ||||||||||||||| ||||| ||||||||||||||
seq2  GAGTGTGCATCGG-ACATCTCATATTGTG-AGACA-GAAGCAGAGCAGAG  138

seq1  CAAGGGACAGCCTCCAAGGACCTGCCTCAGTGAGCTACTTGATCTAACTA  200
      ||| |||||||||||| |||||| | ||||||||||||||||||| ||||
seq2  CAA-GGACAGCCTCCATGGACCTCCATCAGTGAGCTACTTGATCT-ACTA  186

seq1  GGCCCTGCTTTCCACAGATCTATTGTCTTCTGATAGTCTATTCAATTATA  250
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  GGCCCTGCTTTCCACAGATCTATTGTCTTCGAATAGTCTATTCAATTATA  236

seq1  GCTCCACCAACATATTAAATTCATTGAGCCACAGCCTTTGTTGTCTAACT  300
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTCCACCAACATATTAAATTCATTGAGCCACAGCCTTTGTTGTATAACT  286

seq1  ATCTCTGCAAATAGACATAGTCAGAGATGTTCTTATTAAAATCCTTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGCAAATAGACATAGTCAGAGATGTTCTTATTAAAATCCTTGGCA  336

seq1  TTTCTGAATCCAGCCAAGTAAACAACCAAAATCCATCCTCACCTCAACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAATCCAGCCAAGTAAACAACCAAAATCCATCCTCACCTCAACGA  386

seq1  ATCTGAGTGCCTAGAAACAGAGCCTCATCTCACAGGAATGTGGTCCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTGCCTAGAAACAGAGCCTCATCTCACAGGAATGTGGTCCAGGG  436

seq1  GTGGGTGAATAAAAAAGGCTTTGTGAAAGGCATCATGGATCCATACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGAATAAAAAAGGCTTTGTGAAAGGCATCATGGATCCATACTTTT  486

seq1  AGCTACATTTACTGCTCTGTGGCCATGTGAGTCACAAAATCCAAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATTTACTGCTCTGTGGCCATGTGAGTCACAAAATCCAAAACAAA  536

seq1  GCACACTCACCAAATTAATGATTCCAGCTTGGAGCCTCTACTGTTGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTCACCAAATTAATGATTCCAGCTTGGAGCCTCTACTGTTGCCTC  586

seq1  TGTTTTGAAATAACTGATTCAAAGAGGGTTGCCAAACCAGTGGTGATAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAAATAACTGATTCAAAGAGGGTTGCCAAACCAGTGGTGATAGG  636

seq1  TTGCAGTGTCTTTAACCCAGTTGTCGACTATCTGTAGTATGATATTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTGTCTTTAACCCAGTTGTCGACTATCTGTAGTATGATATTAGAC  686

seq1  AGTCGTGACACATTGGTATACCATACTGAAACCTAACTTATTTTTTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTGACACATTGGTATACCATACTGAAACCTAACTTATTTTTTACAT  736

seq1  GCTCAGTTGAGTGAGTGTGTCCATAACCTTATGCAGTTTTGGATCTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTGAGTGAGTGTGTCCATAACCTTATGCAGTTTTGGATCTGTAT  786

seq1  ACATTCATATGGAACCATCACTAGTAAAATATAGCACTACTCCTTCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATATGGAACCATCACTAGTAAAATATAGCACTACTCCTTCTGGC  836

seq1  TTCACTCCATCCCAGCTCATAGCTCCACCCCTTCACATGTATACTTAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCCATCCCAGCTCATAGCTCCACCCCTTCACATGTATACTTAGAC  886

seq1  CATAGATTCAGGGTACATGGCACAAGACTCATCACGAAGCTTTTATATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTCAGGGTACATGGCACAAGACTCATCACGAAGCTTTTATATCT  936

seq1  TGTTGATACCTGGATCTTGCAAGGAATTC  979
      |||||||||||||||||||||||||||||
seq2  TGTTGATACCTGGATCTTGCAAGGAATTC  965