BAC Information

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BAC

Clone NameB6Ng01-144L08
Chromosome12 (Build37)
Map Location 89,811,967 - 89,918,826
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Downstream geneLOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144L08.bB6Ng01-144L08.g
ACCDH942313DH942314
length1,065521
definitionDH942313|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L08, 5' end.DH942314|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,811,967 - 89,813,047)(89,918,300 - 89,918,826)
sequence
gaattctgtggcacacacaaacacaaaatgctttctctgcttgtcacttc
tgatgttttattccatcaagtcctcgaagaaattttgtgttcttactaca
gcaaagtgattttacccagtatttcacatccttttaataatagtactgag
agatgattaaaacagaactattgagatcagctcaaggttttcagacaaac
tgctctggtctgccttttgagtacattatgatctatctgtataaaggagt
tggacaagggtgcctttgcagtctggttgcttatttggaaacagaatggg
atggttagtagagggcagggttatcccatgtttgctctccactcacgagc
ttcatcttcccagacatttcagaggctggcctcacagggggctttaggca
atgtttagatttgcttatttgattttgtgtttcactgtattgatcctagc
taacatttatcttcttttgcggcagagtttttttttggagattttctttc
agagtttacatttggtttttgaatattgcctcaggagagaacaatggttg
cgttccaccattgcccgggctcttcccgtgttagaaacactacagttcgg
gtgcatttgttttgctgttggagtcaaatcaaatccatttcgtgagtgtg
tgtaatgatctcatatggtatcatctaactacatctttctgctttgagat
ggagtactggaatcaatgcttcactgtcaaggttactgacagcagtccca
agacaaagaccaagaccaagaccaaggccaaggccaaagccaaggccaag
gccaaggccaaggccaaggccaaggccaaggccaaggccaaggccaagcc
aagaccaagaatatttcctccctagatgatttcttttggaatgttctggt
tctgatatttgattttcaagttagcattctaattcgcagatttttatcag
tcaagtttgagtctcatatcagatacactttgagacccacaaactttcac
atattgagactttctgtcatgagcattacccagtgggggtgtgagctgct
ttgctactgtagcaa
aaactgtataaatgaactgctgtgaatctctgaaccttcctcattccctg
ccctagctcctaattacagacaactcccagacttacaactgcaatgcaac
caaggccaatcagtgccacctgaatttagagaaccttggaaacacctctg
attctgccgggaaagtcactagcctttccctccttcccaagagtatgctt
gttttaactgggctccagcttccttcctatggctactatgtatcctacat
ctaggaatagcagtaaagccacaggaccaggctctggccctgaaagaact
gcaagattcatgttgaaaaaaaaaaaaaaccctagacttccttcactcac
tcctgaaagggatggggatgaagaaggaaaggagatcctttaagaagata
gtagaagtctccaagtgaataaaatagacctagggaggtcctcggtacat
gtggatagatagataataggaagatagatagatagatagatagatagata
gatagatagatagataggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89811967_89813047
seq2: B6Ng01-144L08.b_45_1109

seq1  GAATTCTGTGGCACACACAAACACAAAATGCTTTCTCTGCTTGTCACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCACACACAAACACAAAATGCTTTCTCTGCTTGTCACTTC  50

seq1  TGATGTTTTATTCCATCAAGTCCTCGAAGAAATTTTGTGTTCTTACTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTTATTCCATCAAGTCCTCGAAGAAATTTTGTGTTCTTACTACA  100

seq1  GCAAAGTGATTTTACCCAGTATTTCACATCCTTTTAATAATAGTACTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGATTTTACCCAGTATTTCACATCCTTTTAATAATAGTACTGAG  150

seq1  AGATGATTAAAACAGAACTATTGAGATCAGCTCAAGGTTTTCAGACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTAAAACAGAACTATTGAGATCAGCTCAAGGTTTTCAGACAAAC  200

seq1  TGCTCTGGTCTGCCTTTTGAGTACATTATGATCTATCTGTATAAAGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGTCTGCCTTTTGAGTACATTATGATCTATCTGTATAAAGGAGT  250

seq1  TGGACAAGGGTGCCTTTGCAGTCTGGTTGCTTATTTGGAAACAGAATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGGGTGCCTTTGCAGTCTGGTTGCTTATTTGGAAACAGAATGGG  300

seq1  ATGGTTAGTAGAGGGCAGGGTTATCCCATGTTTGCTCTCCACTCACGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAGTAGAGGGCAGGGTTATCCCATGTTTGCTCTCCACTCACGAGC  350

seq1  TTCATCTTCCCAGACATTTCAGAGGCTGGCCTCACAGGGGGCTTTAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTCCCAGACATTTCAGAGGCTGGCCTCACAGGGGGCTTTAGGCA  400

seq1  ATGTTTAGATTTGCTTATTTGATTTTGTGTTTCACTGTATTGATCCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGATTTGCTTATTTGATTTTGTGTTTCACTGTATTGATCCTAGC  450

seq1  TAACATTTATCTTCTTTTGCGGCAGAGTTTTTTTTTGGAGATTTTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTATCTTCTTTTGCGGCAGAGTTTTTTTTTGGAGATTTTCTTTC  500

seq1  AGAGTTTACATTTGGTTTTTGAATATTGCCTCAGGAGAGAACAATGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTACATTTGGTTTTTGAATATTGCCTCAGGAGAGAACAATGGTTG  550

seq1  CGTTCCACCATTGCCCGGGCTCTTCCCGTGTTAGAAACACTACAGTTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCACCATTGCCCGGGCTCTTCCCGTGTTAGAAACACTACAGTTCGG  600

seq1  GTGCATTTGTTTTGCTGTTGGAGTCAAATCAAATCCATTTCGTGAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTGTTTTGCTGTTGGAGTCAAATCAAATCCATTTCGTGAGTGTG  650

seq1  TGTAATGATCTCATATGGTATCATCTAACTACATCTTTCTGCTTTGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGATCTCATATGGTATCATCTAACTACATCTTTCTGCTTTGAGAT  700

seq1  GGAGTACTGGAATCAATGCTTCACTGTCAAGGTTACTGACAGCAGTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACTGGAATCAATGCTTCACTGTCAAGGTTACTGACAGCAGTCCCA  750

seq1  AGACAAAGACCAAGACCAAGACCAAGGCCAAGGCCAAGGCCAAGGCCAAG  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGACAAAGACCAAGACCAAGACCAAGGCCAAGGCCAAAGCCAAGGCCAAG  800

seq1  GCCAAGGCCAAGGCCAAGGCCAAGGCCAAGGCCAAGGCCAAG-----GCC  845
      ||||||||||||||||||||||||||||||||||||||||||     |||
seq2  GCCAAGGCCAAGGCCAAGGCCAAGGCCAAGGCCAAGGCCAAGGCCAAGCC  850

seq1  AAGACCAAGAATATTTCCTCCCTAGATGATTTCTTTTGGAATGTTCTGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAGAATATTTCCTCCCTAGATGATTTCTTTTGGAATGTTCTGGT  900

seq1  TCTGAATATTTGATTTTTCAAGTTAGCATTTCTAATTCGCAGATTTTTAT  945
      |||| |||||||| |||||||||||||| |||||||||||||||||||||
seq2  TCTG-ATATTTGA-TTTTCAAGTTAGCA-TTCTAATTCGCAGATTTTTAT  947

seq1  CAGTCCAAGTTTTGAGTCTCATATCAGAATACACTTTGAAGACCCACAAA  995
      |||| |||| ||||||||||||||||| |||||||||| ||||||||  |
seq2  CAGT-CAAG-TTTGAGTCTCATATCAG-ATACACTTTG-AGACCCAC--A  991

seq1  AACTTTCACAATATTTGAGAACTTTCTGTCATTGAGGCATTTACCCCAGT  1045
      ||||||||| ||| ||||| ||||||||||| ||| |||||   ||||| 
seq2  AACTTTCAC-ATA-TTGAG-ACTTTCTGTCA-TGA-GCATT--ACCCAG-  1033

seq1  TGGGGGTGTGAGCTTGGCTTTGGCTTACTGTAGCAA  1081
      ||||||||||||||  ||||||   |||||||||||
seq2  TGGGGGTGTGAGCT--GCTTTG--CTACTGTAGCAA  1065

seq1: chr12_89918300_89918826
seq2: B6Ng01-144L08.g_68_594 (reverse)

seq1  CTACCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  50

seq1  TCCTATTATCTATCTATCCACATGTACCGAGGACCTCCCTAGGTCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTATCTATCTATCCACATGTACCGAGGACCTCCCTAGGTCTATTT  100

seq1  TATTCACTTGGAGACTTCTACTATCTTCTTAAAGGATCTCCTTTCCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTTGGAGACTTCTACTATCTTCTTAAAGGATCTCCTTTCCTTCT  150

seq1  TCATCCCCATCCCTTTCAGGAGTGAGTGAAGGAAGTCTAGGGTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCATCCCTTTCAGGAGTGAGTGAAGGAAGTCTAGGGTTTTTTTT  200

seq1  TTTTTTCAACATGAATCTTGCAGTTCTTTCAGGGCCAGAGCCTGGTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAACATGAATCTTGCAGTTCTTTCAGGGCCAGAGCCTGGTCCTG  250

seq1  TGGCTTTACTGCTATTCCTAGATGTAGGATACATAGTAGCCATAGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACTGCTATTCCTAGATGTAGGATACATAGTAGCCATAGGAAGG  300

seq1  AAGCTGGAGCCCAGTTAAAACAAGCATACTCTTGGGAAGGAGGGAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAGCCCAGTTAAAACAAGCATACTCTTGGGAAGGAGGGAAAGGC  350

seq1  TAGTGACTTTCCCGGCAGAATCAGAGGTGTTTCCAAGGTTCTCTAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTTTCCCGGCAGAATCAGAGGTGTTTCCAAGGTTCTCTAAATTC  400

seq1  AGGTGGCACTGATTGGCCTTGGTTGCATTGCAGTTGTAAGTCTGGGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCACTGATTGGCCTTGGTTGCATTGCAGTTGTAAGTCTGGGAGTT  450

seq1  GTCTGTAATTAGGAGCTAGGGCAGGGAATGAGGAAGGTTCAGAGATTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAATTAGGAGCTAGGGCAGGGAATGAGGAAGGTTCAGAGATTCAC  500

seq1  AGCAGTTCATTTATACAGTTTGAATTC  527
      |||||||||||||||||||||||||||
seq2  AGCAGTTCATTTATACAGTTTGAATTC  527