BAC Information

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BAC

Clone NameB6Ng01-144M18
Chromosome12 (Build37)
Map Location 53,715,638 - 53,889,472
singlet/doubletdoublet
Overlap geneAkap6
Upstream geneStrn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144M18.bB6Ng01-144M18.g
ACCDH942375DH942376
length1,0901,026
definitionDH942375|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M18, 5' end.DH942376|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,888,364 - 53,889,472)(53,715,638 - 53,716,671)
sequence
gaattcagtgtggcccaggagtaggggcacaggagaaaccacagccacat
tccgatagctttgaacactctatacatgaggcttggaatgaatctcacgg
ggctgcagaatctgaaaagatggcttaaaaagagaaagtggagaaaatga
gacaataagcgacacgtggaagcttatatatcaagaaagggaaatgaaaa
ataaaaattcagagaattaagactcctttttctaggcaaatcttaatcaa
tgcagaatataaccttaaaactgcctgtagtacagcaagaaagagtggag
gaaggagggaggcagagagggacggagagagggaggagaccgactttata
tcagagtgattaaggggactttgcgttctgtcctacctgctccattaaat
ataaaaagaggtctccatttttagttctccattagcgctggctcacaatc
atatcacagatttgaagtggaaaacttttaaataccatttcatataatca
tttgacttttttcttgttctaaaatttctttcaaattcatttcacagtaa
tacatattaaatcaaacattgtcaagatggaagcaccgaggttaaaagat
tctctctgtctccatgttcttacctcctgacaagtgatgagtctctctat
tcatatccttcatcattatgcaaagtgagaaggaagatgaaccacgacag
cagagtaatctttgaacatcctgaattccaaaattccttagtcacctgta
ttaatgcagtgtttggtgactctgtgtacatcctcagatactaacaagtt
tctatagaggttgctaaggaattatctaggtagacagcccactgaataca
gctacctaattttgctctctcctaaatgcctacaatcactaccccccccc
ccaaaaggcatttctggtaaggaacatcaaaatcagagggaaaaccatgt
tttgaaagctacaattacataagaggcatacatgctttataacttacaaa
gctaatactagccagtaattcaggagcacagaagaaaatgcctttctttc
agtatttggactggtgacgaggcatctctgccgatagaca
gaattctttgtttagctctgtaacctacttttttaatagggttatttgat
tcttttggagtccagcttcttgagttctttgtatatattggatattagtc
ccctatcagatttaggattggtaaagatcctttcccaatctgttggtggc
ctttttgtcttattgacagtgtcttttctgactttatttttaaagaaaga
aaaatgatatgtttttaatcaactatgcattttgtgtgtcttagaaagac
attacgatcctgtggccagagttcaaacccagctgtagggcttgcattgc
tcacttctccaatggctagtttgagtggtgacctttgctttttattatct
tatatatgagggacctaaaacatactccaatgggttgcaaataaacaccg
ggttatcttccttgtcatcatgtctaggtcaaagttttatgatggtgtgt
gttgtcttccctgtgtttgtttcttctgccctctctaacctttccctttt
ctaagtcattcactaagtccacttggcttctctctttattcacattgcat
atcattctaatgggcctctattgctccatctcatatgcgggctatttgaa
agtctaggtttttttttttttctgctgtatttcatttgcacatagttgac
tattgtttttgcacaaatacaagttttaataaatggttgctctgccccca
tatcagaagcatctgtaatttctgcctttcacattactattttttgattt
ctttcacattgcaattttatgttttctgccaactgtgctcatagcaactc
caaaatgttgcctgcgtccgttacttatactcaactagtatatttgtggt
tttgtttctcaaataatatccacagtactggggaggtggaggcaggaggg
tcagatgtcagttcatcatcgtctacacagaagtttgaaactagactgta
attatatatttaggctaacctcattttgactgtcttgaatatagattatc
tatataaactcagagatctagcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53888364_53889472
seq2: B6Ng01-144M18.b_46_1135 (reverse)

seq1  TGTCTATCTGCAGAGATGCCTCGGTTCACCAGTTCCAAAATACTTGAAAG  50
      |||||||| ||||||||||||||  ||||||||  | |||||| ||||||
seq2  TGTCTATCGGCAGAGATGCCTCG--TCACCAGT--CCAAATAC-TGAAAG  45

seq1  AAAAGGCATGTTTCTTCTGTGCTCCCTGAATTACTGGCTTAGTATTTAGC  100
       |||||||| ||||||||||||| |||||||||||||| ||||| |||||
seq2  -AAAGGCAT-TTTCTTCTGTGCT-CCTGAATTACTGGC-TAGTA-TTAGC  90

seq1  TTTTGTAAGTTATAAAAGCCATGTATTGCTTCTTTATGTAATTTGTAGCT  150
       |||||||||||||||   |||||| ||| || |||||||| ||||||||
seq2  -TTTGTAAGTTATAAA--GCATGTA-TGCCTC-TTATGTAA-TTGTAGCT  134

seq1  TTCAAAACATTGTTTTTCCCTCTGATTTTTGATGTTTCCTTACCAGAAAT  200
      ||||||||| || |||||||||||| |||||||| |||||||||||||||
seq2  TTCAAAACA-TGGTTTTCCCTCTGA-TTTTGATG-TTCCTTACCAGAAAT  181

seq1  GCCTTTTGGGGGGGGGGGTAGTGATTGTAGGCATTTAGGAGAGAGCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGGGGGGGGGGGTAGTGATTGTAGGCATTTAGGAGAGAGCAAAA  231

seq1  TTAGGTAGCTGTATTCAGTGGGCTGTCTACCTAGATAATTCCTTAGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAGCTGTATTCAGTGGGCTGTCTACCTAGATAATTCCTTAGCAAC  281

seq1  CTCTATAGAAACTTGTTAGTATCTGAGGATGTACACAGAGTCACCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAGAAACTTGTTAGTATCTGAGGATGTACACAGAGTCACCAAACA  331

seq1  CTGCATTAATACAGGTGACTAAGGAATTTTGGAATTCAGGATGTTCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTAATACAGGTGACTAAGGAATTTTGGAATTCAGGATGTTCAAAG  381

seq1  ATTACTCTGCTGTCGTGGTTCATCTTCCTTCTCACTTTGCATAATGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTGCTGTCGTGGTTCATCTTCCTTCTCACTTTGCATAATGATGA  431

seq1  AGGATATGAATAGAGAGACTCATCACTTGTCAGGAGGTAAGAACATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGAATAGAGAGACTCATCACTTGTCAGGAGGTAAGAACATGGAG  481

seq1  ACAGAGAGAATCTTTTAACCTCGGTGCTTCCATCTTGACAATGTTTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAATCTTTTAACCTCGGTGCTTCCATCTTGACAATGTTTGATT  531

seq1  TAATATGTATTACTGTGAAATGAATTTGAAAGAAATTTTAGAACAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTATTACTGTGAAATGAATTTGAAAGAAATTTTAGAACAAGAAA  581

seq1  AAAGTCAAATGATTATATGAAATGGTATTTAAAAGTTTTCCACTTCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAATGATTATATGAAATGGTATTTAAAAGTTTTCCACTTCAAAT  631

seq1  CTGTGATATGATTGTGAGCCAGCGCTAATGGAGAACTAAAAATGGAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATATGATTGTGAGCCAGCGCTAATGGAGAACTAAAAATGGAGACC  681

seq1  TCTTTTTATATTTAATGGAGCAGGTAGGACAGAACGCAAAGTCCCCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATATTTAATGGAGCAGGTAGGACAGAACGCAAAGTCCCCTTAA  731

seq1  TCACTCTGATATAAAGTCGGTCTCCTCCCTCTCTCCGTCCCTCTCTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGATATAAAGTCGGTCTCCTCCCTCTCTCCGTCCCTCTCTGCCT  781

seq1  CCCTCCTTCCTCCACTCTTTCTTGCTGTACTACAGGCAGTTTTAAGGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTCCTCCACTCTTTCTTGCTGTACTACAGGCAGTTTTAAGGTTA  831

seq1  TATTCTGCATTGATTAAGATTTGCCTAGAAAAAGGAGTCTTAATTCTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCATTGATTAAGATTTGCCTAGAAAAAGGAGTCTTAATTCTCTG  881

seq1  AATTTTTATTTTTCATTTCCCTTTCTTGATATATAAGCTTCCACGTGTCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTTTTCATTTCCCTTTCTTGATATATAAGCTTCCACGTGTCG  931

seq1  CTTATTGTCTCATTTTCTCCACTTTCTCTTTTTAAGCCATCTTTTCAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGTCTCATTTTCTCCACTTTCTCTTTTTAAGCCATCTTTTCAGAT  981

seq1  TCTGCAGCCCCGTGAGATTCATTCCAAGCCTCATGTATAGAGTGTTCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCCCCGTGAGATTCATTCCAAGCCTCATGTATAGAGTGTTCAAA  1031

seq1  GCTATCGGAATGTGGCTGTGGTTTCTCCTGTGCCCCTACTCCTGGGCCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCGGAATGTGGCTGTGGTTTCTCCTGTGCCCCTACTCCTGGGCCAC  1081

seq1  ACTGAATTC  1109
      |||||||||
seq2  ACTGAATTC  1090

seq1: chr12_53715638_53716671
seq2: B6Ng01-144M18.g_68_1089

seq1  GAATTCTTTGTTTAGCTCTGTAACCTACTTTTTTAATAGGGTTATTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTAACCTACTTTTTTAATAGGGTTATTTGAT  50

seq1  TCTTTTGGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGTC  100

seq1  CCCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGC  150

seq1  CTTTTTGTCTTATTGACAGTGTCTTTTCTGACTTTATTTTTAAAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCTTATTGACAGTGTCTTTTCTGACTTTATTTTTAAAGAAAGA  200

seq1  AAAATGATATGTTTTTAATCAACTATGCATTTTGTGTGTCTTAGAAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATATGTTTTTAATCAACTATGCATTTTGTGTGTCTTAGAAAGAC  250

seq1  ATTACGATCCTGTGGCCAGAGTTCAAACCCAGCTGTAGGGCTTGCATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGATCCTGTGGCCAGAGTTCAAACCCAGCTGTAGGGCTTGCATTGC  300

seq1  TCACTTCTCCAATGGCTAGTTTGAGTGGTGACCTTTGCTTTTTATTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCCAATGGCTAGTTTGAGTGGTGACCTTTGCTTTTTATTATCT  350

seq1  TATATATGAGGGACCTAAAACATACTCCAATGGGTTGCAAATAAACACCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGAGGGACCTAAAACATACTCCAATGGGTTGCAAATAAACACCG  400

seq1  GGTTATCTTCCTTGTCATCATGTCTAGGTCAAAGTTTTATGATGGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTTCCTTGTCATCATGTCTAGGTCAAAGTTTTATGATGGTGTGT  450

seq1  GTTGTCTTCCCTGTGTTTGTTTCTTCTGCCCTCTCTAACCTTTCCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTTCCCTGTGTTTGTTTCTTCTGCCCTCTCTAACCTTTCCCTTTT  500

seq1  CTAAGTCATTCACTAAGTCCACTTGGCTTCTCTCTTTATTCACATTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCATTCACTAAGTCCACTTGGCTTCTCTCTTTATTCACATTGCAT  550

seq1  ATCATTCTAATGGGCCTCTATTGCTCCATCTCATATGCGGGCTATTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTAATGGGCCTCTATTGCTCCATCTCATATGCGGGCTATTTGAA  600

seq1  AGTCTAGGTTTTTTTTTTTTTCTGCTGTATTTCATTTGCACATAGTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGTTTTTTTTTTTTTCTGCTGTATTTCATTTGCACATAGTTGAC  650

seq1  TATTGTTTTTGCACAAATACAAGTTTTAATAAATGGTTGCTCTGCCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTTGCACAAATACAAGTTTTAATAAATGGTTGCTCTGCCCCCA  700

seq1  TATCAGAAGCATCTGTAATTTCTGCCTTTCACATTACTATTTTTTGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAGCATCTGTAATTTCTGCCTTTCACATTACTATTTTTTGATTT  750

seq1  CTTTCACATTGCAATTTTATGTTTTCTGCCAACTGTGCTCATAGCAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACATTGCAATTTTATGTTTTCTGCCAACTGTGCTCATAGCAACTC  800

seq1  CAAAATGTTGCCTGCGTCCGTTACTTATACTCAACTAGTATATTTGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTTGCCTGCGTCCGTTACTTATACTCAACTAGTATATTTGTGGT  850

seq1  TTTGTTTCTCAAATAATATCCACAGTACTGGGGAGGTGGAGGCAGGAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTCAAATAATATCCACAGTACTGGGGAGGTGGAGGCAGGAGGG  900

seq1  TCAGAAGGTCAAGTTCATCATCGTCTACACAGGAAGTTTGAAACTAGACT  950
      |||| | ||| |||||||||||||||||||| ||||||||||||||||||
seq2  TCAG-ATGTC-AGTTCATCATCGTCTACACA-GAAGTTTGAAACTAGACT  947

seq1  GGTATTTATAATATTTAAGCTAAAACTTCAATTTTGACATGTCTTGAAAT  1000
       ||| |||| ||||||| |||  ||| || |||||||| ||||||| |||
seq2  -GTAATTAT-ATATTTAGGCT--AACCTC-ATTTTGAC-TGTCTTG-AAT  990

seq1  ATAGATTTATCTATATAAACTCAGGAGATCTAGC  1034
      ||||| ||||||||||||||||| ||||||||||
seq2  ATAGA-TTATCTATATAAACTCA-GAGATCTAGC  1022