BAC Information

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BAC

Clone NameB6Ng01-145B23
Chromosome12 (Build37)
Map Location 10,113,505 - 10,245,127
singlet/doubletdoublet
Overlap geneLOC382567
Upstream geneLOC633030, LOC100042238, Osr1
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145B23.bB6Ng01-145B23.g
ACCDH942616DH942617
length1,1351,010
definitionDH942616|Mus musculus domesticus DNA, BAC clone: B6Ng01-145B23, 5' end.DH942617|Mus musculus domesticus DNA, BAC clone: B6Ng01-145B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,243,976 - 10,245,127)(10,113,505 - 10,114,513)
sequence
gaattcttcttaaaaaaatatgtgtgaaaaaacatggaagacacctgaca
atgatctctaccttccatattaatatatatattcaatagcaacacacaca
tgaacacacattgtgtgtaaacatacctatgttaaacaccagaagttaac
attgcatctcttccttgattcatttctttatttttatgagtcaaggtctt
tcactaaacttggaatttgctgattgactagctgagttgccccatgagcc
tccggaattcttctatatctccctctccattcatgagatcacaggtatgt
cagagcatatcatgttggtttttaggatcaaactcaggtcttcatacata
tactgtatttgccaactaagccatcttcccaggctactatgatttaatat
attaaattctcaaactctattgaacatctggccatctggggacctgtaag
tgagattctgacccactagtgtggagtgacgaagggtgctaagaatatgc
atttcttaaaactcgcagctatgcaactactccagttctatgctaggaga
agctatgccttacaatgtttcactgtcctaccatgtcttcacacccaaat
ctaaacagtgaccaaatattggctttatttctccatatattaagtatgat
tgcttcagcatactcatttctatttagattaactcactctaactttttga
cttactctttttacaaatgttacggctatcatcagtgtgtacatgcatga
acatgcataccacacagttcacacagggaaaagtgtgcgttcagttctct
cctcccatgtctgtaggttgcgctcatgtcattgggcctgccatggagag
cagtttacccactgagctgtagagccaacctcacctttctgtcttgtatc
tcatttttctgttttcataatttcttttgtatagatttgttggtggtaaa
ttcagtttctcattatgtgaaagtaagtttttttaaacttactctaaatg
gtgatcttattaagcactactttccggggccttagaccatttgggcttca
cctgcacaactagatgaggcatgtgcatctggtaccatctgacttgacct
tcccttactgggtggaaagatccttttttttttat
gaattccattccctttggttaaaacatttctgtgtcttttggtatatttt
tatagataagaagtggcagtttatatttttggcatccaggtagtttaagt
ttctacaaccactctgctgaaatacatctaacatttccagataaggatgc
tcatttttgttattttgtgacaactgctgctctaagtgaaactctggaac
tctaagtgaattttgtgagtgttgcttcttcatgttttctgactctttgg
actctatatattgaacataaactatgtgtatcctagcagttgttctaaat
cctgagggggagattttgacattaagaagtttaaaggaaagaaaatccac
aaatgggcaattttgttttgcaagctcagggtatagtggcaagtccttaa
ggaaaggtagaaactgtaggagaatatttccacaagagagacttgtcact
ctgacacaggaaaccctgtgatactgtctgaaatagaaagtgagaatgaa
tgaatgataaaatgaaaggctatgatgtccattatttagtgatggataat
gtgagaattaggtgccaaggagaagctttggcctaaagaggcggtctgag
gaaggggtgtttgggagcagtggaagatgactcaaagtcgatcatgagta
caactgacagctttgtagtatgttcaagatggctccctagacaatcctct
gtagatagctcttagctttgtagtctgctcaagctagatttctgcttgag
acagttctctctgcttgaaaatctcatgctagaaaaaaaatttctaaagc
tctctggctaactcatgggttttccaacaaatgtcagaaaagctgcttta
aaaaattcgtggattttctgaacaaggtaaaaaatatatgtctctctctc
tctccctctctctctctacagcagttctccactgggtgctctctctatag
gccaaaggtgttttatttacatattaaattcagtcatttactctcaggtt
cccttttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10243976_10245127
seq2: B6Ng01-145B23.b_43_1177 (reverse)

seq1  ATAAAAAAAAAAAAAAAAGGAT-TCTTCACACAGGTAAGGGGAAAGGTCA  49
            | |||||||||||||| | | ||| || |||||||  |||||||
seq2  ------ATAAAAAAAAAAGGATCTTTCCACCCA-GTAAGGG--AAGGTCA  41

seq1  AGTCAGATGGGTACCAGATGCCACATGCCTCATCTTAAGTTGTGCAGGTG  99
      |||||||| ||||||||||| ||||||||||||||  |||||||||||||
seq2  AGTCAGAT-GGTACCAGATG-CACATGCCTCATCT--AGTTGTGCAGGTG  87

seq1  AAGGCCCAAATTGGTCTAAGGCCCCGGAAAGTAGTGCTTAATAAGATCAC  149
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AA-GCCCAAA-TGGTCTAAGGCCCCGGAAAGTAGTGCTTAATAAGATCAC  135

seq1  CATTTAAGAGTAAGTTTAAAAAAACCTTACTTTCACATAATGAGAAACTG  199
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  CATTT-AGAGTAAGTTTAAAAAAA-CTTACTTTCACATAATGAGAAACTG  183

seq1  AATTTACCACCAACAAATCTATACAAAAAGAAATTATGAAAACAGAAAAA  249
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATTTACCACCAACAAATCTATAC-AAAAGAAATTATGAAAACAGAAAAA  232

seq1  TGAGATACAAGACAGAAAGGTGAGGTTGGCTCTACAGCTCAGTGGGTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACAAGACAGAAAGGTGAGGTTGGCTCTACAGCTCAGTGGGTAAA  282

seq1  CTGCTCTCCATGGCAGGCCCAATGACATGAGCGCAACCTACAGACATGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCCATGGCAGGCCCAATGACATGAGCGCAACCTACAGACATGGG  332

seq1  AGGAGAGAACTGAACGCACACTTTTCCCTGTGTGAACTGTGTGGTATGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAACTGAACGCACACTTTTCCCTGTGTGAACTGTGTGGTATGCA  382

seq1  TGTTCATGCATGTACACACTGATGATAGCCGTAACATTTGTAAAAAGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGCATGTACACACTGATGATAGCCGTAACATTTGTAAAAAGAGT  432

seq1  AAGTCAAAAAGTTAGAGTGAGTTAATCTAAATAGAAATGAGTATGCTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAAAAGTTAGAGTGAGTTAATCTAAATAGAAATGAGTATGCTGAA  482

seq1  GCAATCATACTTAATATATGGAGAAATAAAGCCAATATTTGGTCACTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATACTTAATATATGGAGAAATAAAGCCAATATTTGGTCACTGTT  532

seq1  TAGATTTGGGTGTGAAGACATGGTAGGACAGTGAAACATTGTAAGGCATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGGGTGTGAAGACATGGTAGGACAGTGAAACATTGTAAGGCATA  582

seq1  GCTTCTCCTAGCATAGAACTGGAGTAGTTGCATAGCTGCGAGTTTTAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCTAGCATAGAACTGGAGTAGTTGCATAGCTGCGAGTTTTAAGA  632

seq1  AATGCATATTCTTAGCACCCTTCGTCACTCCACACTAGTGGGTCAGAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATATTCTTAGCACCCTTCGTCACTCCACACTAGTGGGTCAGAATC  682

seq1  TCACTTACAGGTCCCCAGATGGCCAGATGTTCAATAGAGTTTGAGAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACAGGTCCCCAGATGGCCAGATGTTCAATAGAGTTTGAGAATTT  732

seq1  AATATATTAAATCATAGTAGCCTGGGAAGATGGCTTAGTTGGCAAATACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAAATCATAGTAGCCTGGGAAGATGGCTTAGTTGGCAAATACA  782

seq1  GTATATGTATGAAGACCTGAGTTTGATCCTAAAAACCAACATGATATGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTATGAAGACCTGAGTTTGATCCTAAAAACCAACATGATATGCT  832

seq1  CTGACATACCTGTGATCTCATGAATGGAGAGGGAGATATAGAAGAATTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATACCTGTGATCTCATGAATGGAGAGGGAGATATAGAAGAATTCC  882

seq1  GGAGGCTCATGGGGCAACTCAGCTAGTCAATCAGCAAATTCCAAGTTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCATGGGGCAACTCAGCTAGTCAATCAGCAAATTCCAAGTTTAG  932

seq1  TGAAAGACCTTGACTCATAAAAATAAAGAAATGAATCAAGGAAGAGATGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACCTTGACTCATAAAAATAAAGAAATGAATCAAGGAAGAGATGC  982

seq1  AATGTTAACTTCTGGTGTTTAACATAGGTATGTTTACACACAATGTGTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAACTTCTGGTGTTTAACATAGGTATGTTTACACACAATGTGTGT  1032

seq1  TCATGTGTGTGTTGCTATTGAATATATATATTAATATGGAAGGTAGAGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTGTGTTGCTATTGAATATATATATTAATATGGAAGGTAGAGAT  1082

seq1  CATTGTCAGGTGTCTTCCATGTTTTTTCACACATATTTTTTTAAGAAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCAGGTGTCTTCCATGTTTTTTCACACATATTTTTTTAAGAAGAA  1132

seq1  TTC  1152
      |||
seq2  TTC  1135

seq1: chr12_10113505_10114513
seq2: B6Ng01-145B23.g_67_1076

seq1  GAATTCCATTCCCTTTGGTTAAAACATTTCTGTGTCTTTTGGTATATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCCTTTGGTTAAAACATTTCTGTGTCTTTTGGTATATTTT  50

seq1  TATAGATAAGAAGTGGCAGTTTATATTTTTGGCATCCAGGTAGTTTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATAAGAAGTGGCAGTTTATATTTTTGGCATCCAGGTAGTTTAAGT  100

seq1  TTCTACAACCACTCTGCTGAAATACATCTAACATTTCCAGATAAGGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAACCACTCTGCTGAAATACATCTAACATTTCCAGATAAGGATGC  150

seq1  TCATTTTTGTTATTTTGTGACAACTGCTGCTCTAAGTGAAACTCTGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTGTTATTTTGTGACAACTGCTGCTCTAAGTGAAACTCTGGAAC  200

seq1  TCTAAGTGAATTTTGTGAGTGTTGCTTCTTCATGTTTTCTGACTCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTGAATTTTGTGAGTGTTGCTTCTTCATGTTTTCTGACTCTTTGG  250

seq1  ACTCTATATATTGAACATAAACTATGTGTATCCTAGCAGTTGTTCTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATATATTGAACATAAACTATGTGTATCCTAGCAGTTGTTCTAAAT  300

seq1  CCTGAGGGGGAGATTTTGACATTAAGAAGTTTAAAGGAAAGAAAATCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGGGAGATTTTGACATTAAGAAGTTTAAAGGAAAGAAAATCCAC  350

seq1  AAATGGGCAATTTTGTTTTGCAAGCTCAGGGTATAGTGGCAAGTCCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCAATTTTGTTTTGCAAGCTCAGGGTATAGTGGCAAGTCCTTAA  400

seq1  GGAAAGGTAGAAACTGTAGGAGAATATTTCCACAAGAGAGACTTGTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTAGAAACTGTAGGAGAATATTTCCACAAGAGAGACTTGTCACT  450

seq1  CTGACACAGGAAACCCTGTGATACTGTCTGAAATAGAAAGTGAGAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACAGGAAACCCTGTGATACTGTCTGAAATAGAAAGTGAGAATGAA  500

seq1  TGAATGATAAAATGAAAGGCTATGATGTCCATTATTTAGTGATGGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATAAAATGAAAGGCTATGATGTCCATTATTTAGTGATGGATAAT  550

seq1  GTGAGAATTAGGTGCCAAGGAGAAGCTTTGGCCTAAAGAGGCGGTCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATTAGGTGCCAAGGAGAAGCTTTGGCCTAAAGAGGCGGTCTGAG  600

seq1  GAAGGGGTGTTTGGGAGCAGTGGAAGATGACTCAAAGTCGATCATGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGTGTTTGGGAGCAGTGGAAGATGACTCAAAGTCGATCATGAGTA  650

seq1  CAACTGACAGCTTTGTAGTATGTTCAAGATGGCTCCCTAGACAATCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGACAGCTTTGTAGTATGTTCAAGATGGCTCCCTAGACAATCCTCT  700

seq1  GTAGATAGCTCTTAGCTTTGTAGTCTGCTCAAGCTAGATTTCTGCTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGCTCTTAGCTTTGTAGTCTGCTCAAGCTAGATTTCTGCTTGAG  750

seq1  ACAGTTCTCTCTGCTTGAAAATCTCATGCTAGAAAAAAAATTCTAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ACAGTTCTCTCTGCTTGAAAATCTCATGCTAGAAAAAAAATTTCTAAAGC  800

seq1  TCTCTGGCTAACTCATGGGTTTTCCAACAAATGTCAGAAAAGCTGCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCTAACTCATGGGTTTTCCAACAAATGTCAGAAAAGCTGCTTTA  850

seq1  AAAAATTCGTGGATTTTCTGAACAA-GTAAAAAATATATGTCTCTCTCTC  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAATTCGTGGATTTTCTGAACAAGGTAAAAAATATATGTCTCTCTCTC  900

seq1  TCTCCCTCTCTCTCTCTACAAGCAGTTCT-CACTGGGTTGCTCTCTCTTA  948
      ||||||||||||||||||| ||||||||| ||||||| ||||||||| ||
seq2  TCTCCCTCTCTCTCTCTAC-AGCAGTTCTCCACTGGG-TGCTCTCTC-TA  947

seq1  TAAGCCAAAGGTGTTTTATTTACATATT-AATTCAGTCATTTACTC-CAG  996
      || ||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TAGGCCAAAGGTGTTTTATTTACATATTAAATTCAGTCATTTACTCTCAG  997

seq1  GTTCCCTTTTAAA  1009
      |||||||||||||
seq2  GTTCCCTTTTAAA  1010