BAC Information

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BAC

Clone NameB6Ng01-145M22
Chromosome12 (Build37)
Map Location 41,111,131 - 41,236,913
singlet/doubletdoublet
Overlap geneZfp277, Dock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145M22.bB6Ng01-145M22.g
ACCDH943113DH943114
length1,1811,082
definitionDH943113|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M22, 5' end.DH943114|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,235,731 - 41,236,913)(41,111,131 - 41,112,144)
sequence
gaattcttcaatacatgctgctgcctcagaatcacttcagttgtaattaa
aacaagttctggggactctgaatttacagttaagtgaagaccaccaggaa
ggaggaaatacagagaatatggacatacacatcttggtggatttccatgg
tttgagtatgtgtttgctggtttggagtctaatgtctgtttgtgttgggg
gacagagtctctctatagccctgcctgttctagaactcaacagactcatc
caaaactgtggcatgcgtcctgcttctttctcccaagtgttgagattaaa
actgtgagtcaccatgcctggcaaccctacatcttttaaaataatctact
ccataaacattagaataccacaagataatatagccctctgaacaaggtat
ataagctgcattttactaacatgtttaataattttaataactgtaagagg
taaaatatctaaaaaaaaccgaaagaagtaatttctaaatgacactaaat
aatcaaagagtttcaatatcctcatgtgtgtttcctactcagcaagaaaa
tgctcaaccccaataaagctcgcttcatttcccagagcagaagtaacatc
catcgtgattaaatcggtattcatccctgattgctgcaaaaataacctca
accttaaaacacatgtacaaaacaaataaataaaaacatcctttgattaa
tcgattaactcttctgtgtgtaatttattcttttaaaatctctgatcagt
tcaattttgccttaattaagaaataattttgttctaattaagatagaact
attccaattagggctctttaaattaattgtcttacagcactaaattaaaa
gtaggttgaactttttcaaaagtatatgatttgaagtttattgacaaaaa
atgtgactgaactgtaatttattttaaagtagtaaaaaaatatgggagga
aaagcttttataagaaatttaagtttgctcattcttcatctattatcagc
actactataatatacacatctataaagatatgagcatcatactgtatttc
tttatattttctgccataggttcatgcatatggtaggtacacgaagaatt
gcataagaaccacttcatctatcaagtgtccaattatagctatctattaa
aaatactatccttaaaggcaattcttattac
gaattcagggtctaggggatggctaagcgggtaagggcgcttgctgccaa
gcctgacaacctaagtttgtcccctgaggcccatattgtggaaggagaaa
accaactgtcacaaattttcttctgaactccctacgtgggctgtggcaca
caccacatggggatgcatacacacacacacacacacacacacacacacac
acacacacacatacacacacagagtaaagaaaaggagagaaatccatgat
atgctacaacatggaggaaaaacctcgagggcatcattagccaggaacag
aaaggcaagcactgtgcgattctatctacctacggtatctaatggtagaa
caacctacagacatacagggactggtggtgtgaagcggtgaggagcggga
actaactggggtattgaggtttaatgggtctaagcatcagggatgaagat
gccagtgttgaggacatgtgctgcacagcaacatgcagagagctagtggt
aatgtgaggttaaattttgttatgtgggtagatttcatgcaataaatttt
aaaaccaagttacaaaaagagagagacgtcaagtcactgaagtaaacgct
ggaaggcataggccattaactctatagtttacagtgacatggttaggcca
tcccagcctgtttctcttcctcgtgattccctctgcaaaaagagttctaa
gagttaaatgaaggacgtaatggaaaacaacacacatgaatgccatacat
ataaactcaaaagaagctgaatcttcggtttgaaaggtaagcaagcaaag
tgttactaggagtccgagtgttctattgttttctgttgctgtgacaaaga
gcacgaccaatatcaactcgtagaggaaaggattcatcgggcttccatgt
ccagtcacatttcctcatgaagtgaactgaaaggcaggataagacgatag
gaacagagtagggccagtgaggagtgctgcttactggcttgctctcactg
tttgttctgctggcttctatacagctggggcattctgcccaggggctggc
accacccacactggtctggccacctcccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41235731_41236913
seq2: B6Ng01-145M22.b_49_1229 (reverse)

seq1  GTAATAAGAATTTGCTTTAGGGA-ATGATATTTAATAGATTAGACTATAA  49
      ||||||||||||  ||||| ||| |  || ||||||||| ||| ||||||
seq2  GTAATAAGAATTGCCTTTAAGGATAGTATTTTTAATAGA-TAG-CTATAA  48

seq1  TTGGACACTTGAATAGATTGAGTGTGTCTTATGCAAT--CTCTGGTACCT  97
      ||||||||||| ||||||  ||||  |||||||||||   ||  ||||||
seq2  TTGGACACTTG-ATAGATGAAGTGGTTCTTATGCAATTCTTCGTGTACCT  97

seq1  ACCATATGCATGATACTATGGCAGGAAAATATAAAGAAATACAGTATGGA  147
      |||||||||||||  |||||||| ||||||||||||||||||||||| ||
seq2  ACCATATGCATGAACCTATGGCA-GAAAATATAAAGAAATACAGTAT-GA  145

seq1  TGCTCATATCTTTATAGATGTGTATA-TATAGTAGTGCTGATAATAGATG  196
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCTCATATCTTTATAGATGTGTATATTATAGTAGTGCTGATAATAGATG  195

seq1  AAGAATGAGGCAAACTTAAATTTCTTATAAAAGCTTTTTCCTCCCATATT  246
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  AAGAATGA-GCAAACTTAAATTTCTTATAAAAGC-TTTTCCTCCCATATT  243

seq1  TTTTTACTACTTTAAAATAAATTACAGTTCAGTCACATTTTTTGTCAATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTACTTTAAAATAAATTACAGTTCAGTCACATTTTTTGTCAATA  293

seq1  AACTTCAAATCATATACTTTTG-AAAAGTTCAACCTACTTTTAATTTAGT  345
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACTTCAAATCATATACTTTTGAAAAAGTTCAACCTACTTTTAATTTAGT  343

seq1  GCTGTAAGACAATTAATTTAAAGAGCCCTAATTGGAATAGTTCTATCTTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGACAATTAATTTAAAGAGCCCTAATTGGAATAGTTCTATCTTA  393

seq1  ATTAGAACAAAATTATTTCTTAATTAAGGCAAAATTGAACTGATCAGAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACAAAATTATTTCTTAATTAAGGCAAAATTGAACTGATCAGAGA  443

seq1  TTTTAAAAGAATAAATTACACACAGAAGAGTTAATCGATTAATCAAAGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGAATAAATTACACACAGAAGAGTTAATCGATTAATCAAAGGA  493

seq1  TGTTTTTATTTATTTGTTTTGTACATGTGTTTTAAGGTTGAGGTTATTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATTTATTTGTTTTGTACATGTGTTTTAAGGTTGAGGTTATTTT  543

seq1  TGCAGCAATCAGGGATGAATACCGATTTAATCACGATGGATGTTACTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAATCAGGGATGAATACCGATTTAATCACGATGGATGTTACTTCT  593

seq1  GCTCTGGGAAATGAAGCGAGCTTTATTGGGGTTGAGCATTTTCTTGCTGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGAAATGAAGCGAGCTTTATTGGGGTTGAGCATTTTCTTGCTGA  643

seq1  GTAGGAAACACACATGAGGATATTGAAACTCTTTGATTATTTAGTGTCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAACACACATGAGGATATTGAAACTCTTTGATTATTTAGTGTCAT  693

seq1  TTAGAAATTACTTCTTTCGGTTTTTTTTAGATATTTTACCTCTTACAGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATTACTTCTTTCGGTTTTTTTTAGATATTTTACCTCTTACAGTT  743

seq1  ATTAAAATTATTAAACATGTTAGTAAAATGCAGCTTATATACCTTGTTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTATTAAACATGTTAGTAAAATGCAGCTTATATACCTTGTTCA  793

seq1  GAGGGCTATATTATCTTGTGGTATTCTAATGTTTATGGAGTAGATTATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTATATTATCTTGTGGTATTCTAATGTTTATGGAGTAGATTATTT  843

seq1  TAAAAGATGTAGGGTTGCCAGGCATGGTGACTCACAGTTTTAATCTCAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATGTAGGGTTGCCAGGCATGGTGACTCACAGTTTTAATCTCAAC  893

seq1  ACTTGGGAGAAAGAAGCAGGACGCATGCCACAGTTTTGGATGAGTCTGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGAAAGAAGCAGGACGCATGCCACAGTTTTGGATGAGTCTGTT  943

seq1  GAGTTCTAGAACAGGCAGGGCTATAGAGAGACTCTGTCCCCCAACACAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTAGAACAGGCAGGGCTATAGAGAGACTCTGTCCCCCAACACAAA  993

seq1  CAGACATTAGACTCCAAACCAGCAAACACATACTCAAACCATGGAAATCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTAGACTCCAAACCAGCAAACACATACTCAAACCATGGAAATCC  1043

seq1  ACCAAGATGTGTATGTCCATATTCTCTGTATTTCCTCCTTCCTGGTGGTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATGTGTATGTCCATATTCTCTGTATTTCCTCCTTCCTGGTGGTC  1093

seq1  TTCACTTAACTGTAAATTCAGAGTCCCCAGAACTTGTTTTAATTACAACT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTAACTGTAAATTCAGAGTCCCCAGAACTTGTTTTAATTACAACT  1143

seq1  GAAGTGATTCTGAGGCAGCAGCATGTATTGAAGAATTC  1183
      ||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATTCTGAGGCAGCAGCATGTATTGAAGAATTC  1181

seq1: chr12_41111131_41112144
seq2: B6Ng01-145M22.g_141_1148

seq1  TGAGGCCCATATTGTGGAAGGAGAAAACCAACTGTCACAAATTTTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCCATATTGTGGAAGGAGAAAACCAACTGTCACAAATTTTCTTCT  50

seq1  GAACTCCCTACGTGGGCTGTGGCACACACCACATGGGGATGCATACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCTACGTGGGCTGTGGCACACACCACATGGGGATGCATACACAC  100

seq1  ACACACACACACACACACACACACACACACACACACATACACACACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACATACACACACAGAG  150

seq1  TAAAGAAAAGGAGAGAAATCCATGATATGCTACAACATGGAGGAAAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAGGAGAGAAATCCATGATATGCTACAACATGGAGGAAAAACC  200

seq1  TCGAGGGCATCATTAGCCAGGAACAGAAAGGCAAGCACTGTGCGATTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGGCATCATTAGCCAGGAACAGAAAGGCAAGCACTGTGCGATTCTA  250

seq1  TCTACCTACGGTATCTAATGGTAGAACAACCTACAGACATACAGGGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTACGGTATCTAATGGTAGAACAACCTACAGACATACAGGGACTG  300

seq1  GTGGTGTGAAGCGGTGAGGAGCGGGAACTAACTGGGGTATTGAGGTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGAAGCGGTGAGGAGCGGGAACTAACTGGGGTATTGAGGTTTAA  350

seq1  TGGGTCTAAGCATCAGGGATGAAGATGCCAGTGTTGAGGACATGTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTAAGCATCAGGGATGAAGATGCCAGTGTTGAGGACATGTGCTGC  400

seq1  ACAGCAACATGCAGAGAGCTAGTGGTAATGTGAGGTTAAATTTTGTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACATGCAGAGAGCTAGTGGTAATGTGAGGTTAAATTTTGTTATG  450

seq1  TGGGTAGATTTCATGCAATAAATTTTAAAACCAAGTTACAAAAAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGATTTCATGCAATAAATTTTAAAACCAAGTTACAAAAAGAGAGA  500

seq1  GACGTCAAGTCACTGAAGTAAACGCTGGAAGGCATAGGCCATTAACTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCAAGTCACTGAAGTAAACGCTGGAAGGCATAGGCCATTAACTCTA  550

seq1  TAGTTTACAGTGACATGGTTAGGCCATCCCAGCCTGTTTCTCTTCCTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACAGTGACATGGTTAGGCCATCCCAGCCTGTTTCTCTTCCTCGT  600

seq1  GATTCCCTCTGCAAAAAGAGTTCTAAGAGTTAAATGAAGGACGTAATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTCTGCAAAAAGAGTTCTAAGAGTTAAATGAAGGACGTAATGGA  650

seq1  AAACAACACACATGAATGCCATACATATAAACTCAAAAGAAGCTGAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACACACATGAATGCCATACATATAAACTCAAAAGAAGCTGAATCT  700

seq1  TCGGTTTGAAAGGTAAGCAAGCAAAGTGTTACTAGGAGTCCGAGTGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTGAAAGGTAAGCAAGCAAAGTGTTACTAGGAGTCCGAGTGTTCT  750

seq1  ATTGTTTTCTGTTGCTGTGACAAAGAGCACGACCAATATCAACTCGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTCTGTTGCTGTGACAAAGAGCACGACCAATATCAACTCGTAGA  800

seq1  GGAAAGGATTCATCGGGCTTCCATGTCCCAGTCACAATTCCTCATGAAGT  850
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  GGAAAGGATTCATCGGGCTTCCATGT-CCAGTCACATTTCCTCATGAAGT  849

seq1  GAACTG-AAGGCAGGAATAAGACGATAGGAACAGAGTAGGGGCCAGTGAG  899
      |||||| |||||||| |||||||||||||||||||||| |||||||||||
seq2  GAACTGAAAGGCAGG-ATAAGACGATAGGAACAGAGTA-GGGCCAGTGAG  897

seq1  GAGTGCTGCTTACTGGCTTGCTCTTCACTGTTTGTTCTGCTGGCTTCTTA  949
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  GAGTGCTGCTTACTGGCTTGCTC-TCACTGTTTGTTCTGCTGGCTTC-TA  945

seq1  TACAACCCTGGGCCA-TCTGCCCA-GGGCTGGCACCACCCACACTGGTCT  997
      ||||   ||||| || |||||||| |||||||||||||||||||||||||
seq2  TACA--GCTGGGGCATTCTGCCCAGGGGCTGGCACCACCCACACTGGTCT  993

seq1  GGGGCCACCTCCCACAT  1014
        |||||||||||||||
seq2  --GGCCACCTCCCACAT  1008