BAC Information

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BAC

Clone NameB6Ng01-146B01
Chromosome12 (Build37)6 (Build37)
Map Location 32,631,616 - 32,631,72694,974,305 - 94,974,799
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146B01.bB6Ng01-146B01.g
ACCDH943304DH943305
length172489
definitionDH943304|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B01, 5' end.DH943305|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,726)(94,974,305 - 94,974,799)
sequence
gaattcagctcctcaacaatatgaactgaccagtatcccccggagctcgt
gtctctagctgcatacgtagcagaagatggcctagtcagccatcactggg
aagagaggccccttggtcttgcaaactttatatgcctcagtagaggggaa
tgccagggccaagaagtgggag
accctagagactccccagtgtgaactctgaactaaccacatccattatgc
atgcgagagtgaagagagggtgtgagtgtgcggaagtgagatgctgtgat
taatgcacctgtcagaagtcagaacgctctgccagctggtgatctgcctt
aagctcctcttcccaagagttatattacaaacatgccagttgttcaacat
gacaccaccatttgtttttagtggggaccacctagaactggtctgtagac
tcacagttctgtgttgaaataattaagaaaatagcgtcttcatcttggga
aagcccttgggatgccagatgatgtataggatttgatggggggccggggg
ggggggcacagatcaactacaaaacactccattataaacattcacaagaa
actcttggctggggataagataggtgtttgattaaggttggtttctgagt
ctacagagactttgtacgcagaaggaaggttcttcccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631726
seq2: B6Ng01-146B01.b_55_213 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCATTCCCCTCTACTGAGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| | ||||||||||| ||| |||                ||||
seq2  GCAAGACCAAGGGGCCTCTCTTCCCAGTGATGGCTGACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGG-TACTGGTCAGTTC  102
      || ||| || |||||||||||||||||||||||||| |||||||||||||
seq2  TGCTACGTATGCAGCTAGAGACACGAGCTCCGGGGGATACTGGTCAGTTC  150

seq1  ATAATGTTG  111
      ||| |||||
seq2  ATATTGTTG  159

seq1: chr6_94974305_94974799
seq2: B6Ng01-146B01.g_65_559

seq1  GAATTCACCCTAGAGACTCCCCAGTGTGAACTCTGAACTAACCACATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTAGAGACTCCCCAGTGTGAACTCTGAACTAACCACATCCA  50

seq1  TTATGCATGCGAGAGTGAAGAGAGGGTGTGAGTGTGCGGAAGTGAGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATGCGAGAGTGAAGAGAGGGTGTGAGTGTGCGGAAGTGAGATGC  100

seq1  TGTGATTAATGCACCTGTCAGAAGTCAGAACGCTCTGCCAGCTGGTGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTAATGCACCTGTCAGAAGTCAGAACGCTCTGCCAGCTGGTGATC  150

seq1  TGCCTTAAGCTCCTCTTCCCAAGAGTTATATTACAAACATGCCAGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAAGCTCCTCTTCCCAAGAGTTATATTACAAACATGCCAGTTGTT  200

seq1  CAACATGACACCACCATTTGTTTTTAGTGGGGACCACCTAGAACTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGACACCACCATTTGTTTTTAGTGGGGACCACCTAGAACTGGTCT  250

seq1  GTAGACTCACAGTTCTGTGTTGAAATAATTAAGAAAATAGCGTCTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTCACAGTTCTGTGTTGAAATAATTAAGAAAATAGCGTCTTCATC  300

seq1  TTGGGAAAGCCCTTGGGATGCCAGATGATGTATAGGATTTGATGGGGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAGCCCTTGGGATGCCAGATGATGTATAGGATTTGATGGGGGGC  350

seq1  CGGGGGGGGGGGCACAGATCAACTACAAAACACTCCATTATAAACATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGGGGGGGCACAGATCAACTACAAAACACTCCATTATAAACATTCA  400

seq1  CAAGAAACTCTTGGCTGGGGATAAGATAGGTGTTTGATAAAGGTAGGTTT  450
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CAAGAAACTCTTGGCTGGGGATAAGATAGGTGTTTGATTAAGGTTGGTTT  450

seq1  CTGAGTCTACAGAGACTTTGCACGCAGAAGCAAGGTTCTTCCCAC  495
      |||||||||||||||||||| ||||||||| ||||||||||||||
seq2  CTGAGTCTACAGAGACTTTGTACGCAGAAGGAAGGTTCTTCCCAC  495