BAC Information

Click to search

BAC

Clone NameB6Ng01-146G11
Chromosome12 (Build37)
Map Location 51,971,913 - 52,170,542
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039455, Prkcm
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146G11.bB6Ng01-146G11.g
ACCDH943558DH943559
length8071,117
definitionDH943558|Mus musculus domesticus DNA, BAC clone: B6Ng01-146G11, 5' end.DH943559|Mus musculus domesticus DNA, BAC clone: B6Ng01-146G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,971,913 - 51,972,721)(52,169,414 - 52,170,542)
sequence
gaattctacactgaggaataccaaatgactcagaagcacctaaagaagtg
ttcaacatacttagtcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcataccagatcaaaaatgcaggtgacagcagatcctggtgagg
atgtggagaaagagttacactccttcattgttggtgggattgcaagctgg
tacaaccactctgaaaatcagtctgtcaccagtttttcagaaaattggac
atagtactacctgaggacctagcaataccactcctgggcatataccccaa
agatcctccaatatataacaaggacacatgctccactatgttcatagcag
ccttatttataatagctagaaactggaaagacttagctttcataaaactg
aaaactctgccattaaaacagtattcacagatagtccaagagactttttt
gttattgtctttaaactttttttacattccagaatcattatccccctcta
attctgtcctccaacagttcctcatccctttccccctccccccattctct
aagagtctccacccccccaaccccctcccccacacacacacacattgcca
ggcctccccaccccctggggctttcaagtccctcaaggttaggtgaatct
tctctcacagaggccagaccaagcaatcctccgctgtatatgtgtcaggg
cctcatatcagctagtgtatgctgcctggttggtggctcattgtctcaat
atctttgaggtctgagttaattgaaactgctggtcttgatatggggtcac
tcccctc
gaattccacaaaaccagctcaggaagactagattaactactctggactgt
gctgggggataaaggaaggttttccatgcaagtttcttttttgcatgcaa
tgttaagaagtaaggcttttaaaagtgagattgttagagacattgaagga
ccacggaaggaaaactcttttcttctggtcaagagaatgaaatctctggc
ttgggtgagacctaatgttgcagctgggttagaaggatgatagacgtcta
caaggaaggtgggttcaggctttctttcttccccatcttccccctccagc
tagccactgagatttctatctatctatctatctatctatctatctatcta
tctatctatccactatctacctgtctatcttaaataaaattgtcctcagg
cttccatttgagcacattcctaaattcttttatcaacaagactaagaaag
acttaagaaccacaagagggcctccaatttccttgacattgtatggtgac
ctcgaagggactcctctgctaacaggatcagtcaacagactttccttcat
taactctgtccctactattctgatcaccactgatatctgtacctgttcag
tggttagctcttcaggctgagccaataagagccctcagtgtccttcctgc
tgctgttccttcgatgagctgcacaccaaggccgtgcgagcagcaaatgt
atgaccctagcctagtatgcttcatgccgtccagtaccttgatatgcagt
gtgtgggtaacaggggctgcctgttacacctgagctgggcaccgatgtgg
aattgtcataaaacttggaagcacatgactcaagctagttaccatttact
ttctagtttctctctctctctttttaatttactgggtattttatttactg
atatttcaaatgttatttcccttcccacacccccatcccccccttctccg
tgctcctatggggttgctatttcttctttgaagaatttcttatgagtaac
catgaaaagggactattattacgccattttccctgttcgaattattgtct
ccttgtctgaggaaaaattcgtttcacttagaagttgttttaggaatgag
aaggaaacactttctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51971913_51972721
seq2: B6Ng01-146G11.b_49_855

seq1  GAATTCTACACTGAGGAATACCAAATGACTCAGAAGCACCTAAAGAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACTGAGGAATACCAAATGACTCAGAAGCACCTAAAGAAGTG  50

seq1  TTCAACATACTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATACTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCTACCTCATACCAGATCAAAAATGCAGGTGACAGCAGATCCTGGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCATACCAGATCAAAAATGCAGGTGACAGCAGATCCTGGTGAGG  150

seq1  ATGTGGAGAAAGAGTTACACTCCTTCATTGTTGGTGGGATTGCAAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGAAAGAGTTACACTCCTTCATTGTTGGTGGGATTGCAAGCTGG  200

seq1  TACAACCACTCTGAAAATCAGTCTGTCACCAGTTTTTCAGAAAATTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCACTCTGAAAATCAGTCTGTCACCAGTTTTTCAGAAAATTGGAC  250

seq1  ATAGTACTACCTGAGGACCTAGCAATACCACTCCTGGGCATATACCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACTACCTGAGGACCTAGCAATACCACTCCTGGGCATATACCCCAA  300

seq1  AGATCCTCCAATATATAACAAGGACACATGCTCCACTATGTTCATAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTCCAATATATAACAAGGACACATGCTCCACTATGTTCATAGCAG  350

seq1  CCTTATTTATAATAGCTAGAAACTGGAAAGACTTAGCTTTCATAAAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTATAATAGCTAGAAACTGGAAAGACTTAGCTTTCATAAAACTG  400

seq1  AAAACTCTGCCATTAAAACAGTATTCACAGATAGTCCAAGAGACTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTGCCATTAAAACAGTATTCACAGATAGTCCAAGAGACTTTTTT  450

seq1  GTTATTGTCTTTAAACTTTTTTTACATTCCAGAATCATTATCCCCCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTCTTTAAACTTTTTTTACATTCCAGAATCATTATCCCCCTCTA  500

seq1  ATTCTGTCCTCCAACAGTTCCTCATCCCTTTCCCCCTCCCCCCATTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCCTCCAACAGTTCCTCATCCCTTTCCCCCTCCCCCCATTCTCT  550

seq1  AAGAGTCTCCACCCCCCCAACCCCCTCCCCCACACACACACACATTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCTCCACCCCCCCAACCCCCTCCCCCACACACACACACATTGCCA  600

seq1  GGCCTCCCCACCCCCTGGGGC-TTCAAGTCCCTCAAAGGTTAGGTGAATC  649
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  GGCCTCCCCACCCCCTGGGGCTTTCAAGTCCCTC-AAGGTTAGGTGAATC  649

seq1  TTCTCTCACAGAGGCCAGACCAAGCAATCCTCCGCTGTATATGTGTCAGG  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCTCTCACAGAGGCCAGACCAAGCAATCCTCCGCTGTATATGTGTCA-G  698

seq1  GGCCTCATATCAGCTAGTGTATGCTGCCTGGTTGGTGGCTCAGTGTCTCA  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCCTCATATCAGCTAGTGTATGCTGCCTGGTTGGTGGCTCATTGTCTCA  748

seq1  GAGATCTTGGAGGTCTGAGTTAATTGAAACTGCTGGTCTTGATATGGGGT  799
       | ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -ATATCTTTGAGGTCTGAGTTAATTGAAACTGCTGGTCTTGATATGGGGT  797

seq1  CACTCTCCTC  809
      ||||| ||||
seq2  CACTCCCCTC  807

seq1: chr12_52169414_52170542
seq2: B6Ng01-146G11.g_67_1183 (reverse)

seq1  TTAGAAA-TGTTTCCTTTCTCATTTTCCTAAAACAACTTCATAAACTGAA  49
      ||||||| ||||||| ||||||  ||||||||||||||||   || ||||
seq2  TTAGAAAGTGTTTCC-TTCTCA--TTCCTAAAACAACTTC--TAAGTGAA  45

seq1  ACAAATTCTTCCTCAGAACAACAGGAGACATAAAATCGAAACAGGGAGAA  99
      || |||| |||||||| |||  ||||||||  || ||| |||||||| ||
seq2  ACGAATTTTTCCTCAG-ACA--AGGAGACAATAATTCG-AACAGGGA-AA  90

seq1  ATGGCGTAAATATAGTCACATTTCATTGTATACTCATAAGAAATTC-TCA  148
      |||||||||  |||||| | |||||| || |||||||||||||||| |||
seq2  ATGGCGTAATAATAGTCCCTTTTCATGGT-TACTCATAAGAAATTCTTCA  139

seq1  AAGAAGAAAATAGCAACCCCATAGGAGCACGGAGAAGGGGGGGATGGGGG  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAG-AAATAGCAACCCCATAGGAGCACGGAGAAGGGGGGGATGGGGG  188

seq1  TGTGAGGAAGGGAAATAACATTTGAAATATCAGTAAATAAAATAACCAGT  248
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTG-GGAAGGGAAATAACATTTGAAATATCAGTAAATAAAATACCCAGT  237

seq1  AAATTAAAAAGAGAGAGAGAGAAAACTAGAAAAGTAAATGGTAACTAGCT  298
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  AAATTAAAAAGAGAGAGAGAG-AAACTAG-AAAGTAAATGGTAACTAGCT  285

seq1  TGAGTCATGTGCTTCC-AGTTTTATGAACAATTCCACTTCGGTG-CCAGC  346
      |||||||||||||||| ||||||||| |||||||||| |||||| |||||
seq2  TGAGTCATGTGCTTCCAAGTTTTATG-ACAATTCCACATCGGTGCCCAGC  334

seq1  TCAGGTGTAACAGGCAGCCCCTGTTACCCACACACTGCATATCAAGGTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTAACAGGCAGCCCCTGTTACCCACACACTGCATATCAAGGTAC  384

seq1  TGGACGGCATGAAGCATACTAGGCTAGGGTCATACATTTGCTGCTCGCAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGCATGAAGCATACTAGGCTAGGGTCATACATTTGCTGCTCGCAC  434

seq1  GGCCTTGGTGTGCAGCTCATCGAAGGAACAGCAGCAGGAAGGACACTGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGTGTGCAGCTCATCGAAGGAACAGCAGCAGGAAGGACACTGAG  484

seq1  GGCTCTTATTGGCTCAGCCTGAAGAGCTAACCACTGAACAGGTACAGATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTATTGGCTCAGCCTGAAGAGCTAACCACTGAACAGGTACAGATA  534

seq1  TCAGTGGTGATCAGAATAGTAGGGACAGAGTTAATGAAGGAAAGTCTGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTGATCAGAATAGTAGGGACAGAGTTAATGAAGGAAAGTCTGTT  584

seq1  GACTGATCCTGTTAGCAGAGGAGTCCCTTCGAGGTCACCATACAATGTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATCCTGTTAGCAGAGGAGTCCCTTCGAGGTCACCATACAATGTCA  634

seq1  AGGAAATTGGAGGCCCTCTTGTGGTTCTTAAGTCTTTCTTAGTCTTGTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTGGAGGCCCTCTTGTGGTTCTTAAGTCTTTCTTAGTCTTGTTG  684

seq1  ATAAAAGAATTTAGGAATGTGCTCAAATGGAAGCCTGAGGACAATTTTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAATTTAGGAATGTGCTCAAATGGAAGCCTGAGGACAATTTTAT  734

seq1  TTAAGATAGACAGGTAGATAGTGGATAGATAGATAGATAGATAGATAGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAGACAGGTAGATAGTGGATAGATAGATAGATAGATAGATAGAT  784

seq1  AGATAGATAGATAGATAGAAATCTCAGTGGCTAGCTGGAGGGGGAAGATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGAAATCTCAGTGGCTAGCTGGAGGGGGAAGATG  834

seq1  GGGAAGAAAGAAAGCCTGAACCCACCTTCCTTGTAGACGTCTATCATCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAAGAAAGCCTGAACCCACCTTCCTTGTAGACGTCTATCATCCT  884

seq1  TCTAACCCAGCTGCAACATTAGGTCTCACCCAAGCCAGAGATTTCATTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCCAGCTGCAACATTAGGTCTCACCCAAGCCAGAGATTTCATTCT  934

seq1  CTTGACCAGAAGAAAAGAGTTTTCCTTCCGTGGTCCTTCAATGTCTCTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCAGAAGAAAAGAGTTTTCCTTCCGTGGTCCTTCAATGTCTCTAA  984

seq1  CAATCTCACTTTTAAAAGCCTTACTTCTTAACATTGCATGCAAAAAAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCACTTTTAAAAGCCTTACTTCTTAACATTGCATGCAAAAAAGAA  1034

seq1  ACTTGCATGGAAAACCTTCCTTTATCCCCCAGCACAGTCCAGAGTAGTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATGGAAAACCTTCCTTTATCCCCCAGCACAGTCCAGAGTAGTTA  1084

seq1  ATCTAGTCTTCCTGAGCTGGTTTTGTGGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  ATCTAGTCTTCCTGAGCTGGTTTTGTGGAATTC  1117