BAC Information

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BAC

Clone NameB6Ng01-146I02
Chromosome12 (Build37)
Map Location 17,122,678 - 17,336,486
singlet/doubletdoublet
Overlap geneKcnf1, LOC100043299, Pdia6, Atp6v1c2
Upstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514
Downstream geneNol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146I02.bB6Ng01-146I02.g
ACCDH943633DH943634
length1,053811
definitionDH943633|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I02, 5' end.DH943634|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,335,433 - 17,336,486)(17,122,678 - 17,123,485)
sequence
gaattccttttttgagtgggaaatctgaaccgcagcatgggtaagtagtt
tatcttgtctgattccaaagcctaagctctttcaccagatctgctcttgt
gggtccatccctccatgttccccagcaaagagagggcaagaaaaactttc
tagaaaagtccataagcctaccgaggctcagtgctgtctctgtgagttta
taaaatacatccttagatctgtatgaggaaataaagaagtccccaagcct
gtcacctgggagtggccagagaacaacagactaaataggccagccttgtc
cttctggttcccaaacctgaagggactgttccatcttgcacagactttag
ctggctcagtgcatgatccttgccaacgtttcaggaatatctcaccaaat
agcaggctggagatgatcaaggtgggtgactctggctaacacattgaaat
gccctgggaacaagtaggaagccatggttttcataaaccctgtctgtgct
cttcactgtttgcatcctggagagtgttgtaagtgaccatgatttagtaa
tagatttcagatactctagggacgtgtggggaaggggagaggaaaaggaa
caatgcaggcatagaagagaaacactttgcttatagagcagaaaggctgc
tggggaccagagacaagctcttcatgttacaaggaggcaagacccacagc
tggcttatttctctgttaaagtgatagggaaactaaaggatatagacatg
tttgcccttgagagccacaagtcaaagcctcttgagcaagactcactccg
ccccattcccatccctaagttctctgacaagtcaaagctgcaagaccccc
tcccccactacaagtctctgagctgtgacaagtgcggatgggactgatta
tccttcactgatgagatacaaatgatagtttttaggctttaaaagcaagc
agtatcggggtcatgcagtagctcagtgtgtgaactgctggtcttgcaaa
cttgaggaacttgagcttaatcccagaacatgcatttagaataaagaaga
agc
gaattccattttggttctgacaacattcacatctctttcacagccctcaa
gaatggcatgaatgggtagtcaccattgccatgagctcacacaagtcgct
tggcaatctaagacttctttggtttctgaagaggttctccagggccggat
agagtaaatggcccaggacaaacagagaatcttcacattcatattttttt
tcttgataagacaaaaaaaaaaatcacaaggggtcaccatgaagattgct
ttcgactctgacatcaggtgactgtagtctcatgaagcagaggcacagtg
agaacttttactgagagttagaataaactagcttcctggccctattggaa
aggaatctttcccatgtctgaggtagagggtgatgaagagaactcatcaa
taatcccagaaggagcacagagaggatgtggggccctctcccctgccagt
ggaaaaagggaattaggagttcctgcatcctgccaagcaagatggagacc
atgtttctgcttggatctttcactccagcaggcacatatgctcccatcca
tcacccatttgaaaagaagacatatcatgtgagttcctttgtgattgggt
tatctcactcaggatgatgccctccagtttccatccatttgcctaggaat
ttcataaattcattcttttttaatagctgagtagtactccattgtgtaaa
tgtaccacatttttttgtatccattcctctgtgaggggcatctgggttct
ttccagcttctgggctataataaacaaggctgctatgaacatagtggagc
atgtgtccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_17335433_17336486
seq2: B6Ng01-146I02.b_45_1097 (reverse)

seq1  GCTTCTTCTTTATTCTTAAATGCATGTTCTGGGAATTAAGCTC-AGGTCC  49
      ||||||||||||||| ||||||||||||||||| ||||||||| || |||
seq2  GCTTCTTCTTTATTC-TAAATGCATGTTCTGGG-ATTAAGCTCAAGTTCC  48

seq1  TCAGGTTTGCAAGACAGGCAGTTCACACACTGAGCTACTGCATGAGCCCC  99
      ||| |||||||||||  |||||||||||||||||||||||||||| ||||
seq2  TCAAGTTTGCAAGACCAGCAGTTCACACACTGAGCTACTGCATGA-CCCC  97

seq1  GATACTGCTTGCTTTTTAAAGCCTAAAAACTATCATTTGTATCTCATCAG  149
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATACTGCTTGC-TTTTAAAGCCTAAAAACTATCATTTGTATCTCATCAG  146

seq1  TGAAGGATAATCAGTCCCATCCGCACTTGTCACAGCTCAGAGACTTGTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATAATCAGTCCCATCCGCACTTGTCACAGCTCAGAGACTTGTAG  196

seq1  TGGGGGAGGGGGTCTTGCAGCTTTGACTTGTCAGAGAACTTA-GGATGGG  248
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGGGGAGGGGGTCTTGCAGCTTTGACTTGTCAGAGAACTTAGGGATGGG  246

seq1  -ATGGGGCGGAGTGAGTCTTGCTCAAGAGGCTTTGACTTGTGGCTCTCAA  297
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCGGAGTGAGTCTTGCTCAAGAGGCTTTGACTTGTGGCTCTCAA  296

seq1  GGGCAAACATGTCTATATCCTTTAGTTTCCCTATCACTTTAACAGAGAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAACATGTCTATATCCTTTAGTTTCCCTATCACTTTAACAGAGAAA  346

seq1  TAAGCCAGCTGTGGGTCTTGCCTCCTTGTAACATGAAGAGCTTGTCTCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGCTGTGGGTCTTGCCTCCTTGTAACATGAAGAGCTTGTCTCTG  396

seq1  GTCCCCAGCAGCCTTTCTGCTCTATAAGCAAAGTGTTTCTCTTCTATGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAGCAGCCTTTCTGCTCTATAAGCAAAGTGTTTCTCTTCTATGCC  446

seq1  TGCATTGTTCCTTTTCCTCTCCCCTTCCCCACACGTCCCTAGAGTATCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTTCCTTTTCCTCTCCCCTTCCCCACACGTCCCTAGAGTATCTG  496

seq1  AAATCTATTACTAAATCATGGTCACTTACAACACTCTCCAGGATGCAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATTACTAAATCATGGTCACTTACAACACTCTCCAGGATGCAAAC  546

seq1  AGTGAAGAGCACAGACAGGGTTTATGAAAACCATGGCTTCCTACTTGTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAGCACAGACAGGGTTTATGAAAACCATGGCTTCCTACTTGTTC  596

seq1  CCAGGGCATTTCAATGTGTTAGCCAGAGTCACCCACCTTGATCATCTCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCATTTCAATGTGTTAGCCAGAGTCACCCACCTTGATCATCTCCA  646

seq1  GCCTGCTATTTGGTGAGATATTCCTGAAACGTTGGCAAGGATCATGCACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTATTTGGTGAGATATTCCTGAAACGTTGGCAAGGATCATGCACT  696

seq1  GAGCCAGCTAAAGTCTGTGCAAGATGGAACAGTCCCTTCAGGTTTGGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCTAAAGTCTGTGCAAGATGGAACAGTCCCTTCAGGTTTGGGAA  746

seq1  CCAGAAGGACAAGGCTGGCCTATTTAGTCTGTTGTTCTCTGGCCACTCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGACAAGGCTGGCCTATTTAGTCTGTTGTTCTCTGGCCACTCCC  796

seq1  AGGTGACAGGCTTGGGGACTTCTTTATTTCCTCATACAGATCTAAGGATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACAGGCTTGGGGACTTCTTTATTTCCTCATACAGATCTAAGGATG  846

seq1  TATTTTATAAACTCACAGAGACAGCACTGAGCCTCGGTAGGCTTATGGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAAACTCACAGAGACAGCACTGAGCCTCGGTAGGCTTATGGAC  896

seq1  TTTTCTAGAAAGTTTTTCTTGCCCTCTCTTTGCTGGGGAACATGGAGGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGAAAGTTTTTCTTGCCCTCTCTTTGCTGGGGAACATGGAGGGA  946

seq1  TGGACCCACAAGAGCAGATCTGGTGAAAGAGCTTAGGCTTTGGAATCAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCACAAGAGCAGATCTGGTGAAAGAGCTTAGGCTTTGGAATCAGA  996

seq1  CAAGATAAACTACTTACCCATGCTGCGGTTCAGATTTCCCACTCAAAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAAACTACTTACCCATGCTGCGGTTCAGATTTCCCACTCAAAAAA  1046

seq1  GGAATTC  1054
      |||||||
seq2  GGAATTC  1053

seq1: chr12_17122678_17123485
seq2: B6Ng01-146I02.g_68_878

seq1  GAATTCCATTTTGGTTCTGACAACATTCACATCTCTTTCACAGCCCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTGGTTCTGACAACATTCACATCTCTTTCACAGCCCTCAA  50

seq1  GAATGGCATGAATGGGTAGTCACCATTGCCATGAGCTCACACAAGTCGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCATGAATGGGTAGTCACCATTGCCATGAGCTCACACAAGTCGCT  100

seq1  TGGCAATCTAAGACTTCTTTGGTTTCTGAAGAGGTTCTCCAGGGCCGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATCTAAGACTTCTTTGGTTTCTGAAGAGGTTCTCCAGGGCCGGAT  150

seq1  AGAGTAAATGGCCCAGGACAAACAGAGAATCTTCACATTCATATTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAATGGCCCAGGACAAACAGAGAATCTTCACATTCATATTTTTTT  200

seq1  TCTTGATAAGACAAAAAAAAAAATCACAAGGGGTCACCATGAAGATTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATAAGACAAAAAAAAAAATCACAAGGGGTCACCATGAAGATTGCT  250

seq1  TTCGACTCTGACATCAGGTGACTGTAGTCTCATGAAGCAGAGGCACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACTCTGACATCAGGTGACTGTAGTCTCATGAAGCAGAGGCACAGTG  300

seq1  AGAACTTTTACTGAGAGTTAGAATAAACTAGCTTCCTGGCCCTATTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTTACTGAGAGTTAGAATAAACTAGCTTCCTGGCCCTATTGGAA  350

seq1  AGGAATCTTTCCCATGTCTGAGGTAGAGGGTGATGAAGAGAACTCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTTTCCCATGTCTGAGGTAGAGGGTGATGAAGAGAACTCATCAA  400

seq1  TAATCCCAGAAGGAGCACAGAGAGGATGTGGGGCCCTCTCCCCTGCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGAAGGAGCACAGAGAGGATGTGGGGCCCTCTCCCCTGCCAGT  450

seq1  GGAAAAAGGGAATTAGGAGTTCCTGCATCCTGCCAAGCAAGATGGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGGGAATTAGGAGTTCCTGCATCCTGCCAAGCAAGATGGAGACC  500

seq1  ATGTTTCTGCTTGGATCTTTCACTCCAGCAGGCACATATGCTCCCATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTGCTTGGATCTTTCACTCCAGCAGGCACATATGCTCCCATCCA  550

seq1  TCACCCATTTGAAAAGAAGACATATCATGTGAGTTCCTTTGTGATTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATTTGAAAAGAAGACATATCATGTGAGTTCCTTTGTGATTGGGT  600

seq1  TATCTCACTCAGGATGATGCCCTCCAG-TTCCATCCATTTGCCTAGGAAT  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATCTCACTCAGGATGATGCCCTCCAGTTTCCATCCATTTGCCTAGGAAT  650

seq1  TTCATAAATTCATTC-TTTTTAATAGCTGAGTAGTACTCCATTGTGTAAA  698
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCATAAATTCATTCTTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAA  700

seq1  TGTACCACA-TTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTC  747
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  TGTACCACATTTTTTTGTATCCATTCCTCTG-TGAGGGGCATCTGGGTTC  749

seq1  TTTCCAGCTTCT-GGCTATTATAAACAAGGCTGCTATGAACATAGTGGAG  796
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TTTCCAGCTTCTGGGCTATAATAAACAAGGCTGCTATGAACATAGTGGAG  799

seq1  CATGTGTCCTTC  808
      ||||||||||||
seq2  CATGTGTCCTTC  811