BAC Information

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BAC

Clone NameB6Ng01-147M19
Chromosome12 (Build37)
Map Location 27,942,232 - 28,095,871
singlet/doubletdoublet
Overlap geneSox11
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneLOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147M19.bB6Ng01-147M19.g
ACCDH944578DH944579
length6371,106
definitionDH944578|Mus musculus domesticus DNA, BAC clone: B6Ng01-147M19, 5' end.DH944579|Mus musculus domesticus DNA, BAC clone: B6Ng01-147M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,942,232 - 27,942,868)(28,094,762 - 28,095,871)
sequence
gaattcactgaaattgaaagttgtcagagaaattgtactgacacatatat
ttgtaggaaagaaatagaatatgtaaagacattctagcaagggagggaga
atggagaggaatgtgatacagctctctcacttcgagaatgaaaatagatc
ccaagactcacaaagcacggtaaatcacttgactttattatgccagcaca
ggggtctgagttccagccccagaatgcacatgaagccaaatgtggtggcg
tgcatctgtaatcccagctctgtctctagaaagcttggaggcaaagtcag
aggaatctcaaaggccagctagcctggggtggacaagaaaccctgtctca
aagtggaaagcaaagactgaaacctgatattggcatgcatgtgtccagat
acacacacacacacacacacacacacacacacacacaaacaccatacgtg
tacatatatgaacatgaatgttttaaagaagaatctaaataagaataata
gataatgaaggaaggaaaaaagataagctcagcaaagtgatgctccacag
tttccagtggggattagggatggtacatccaagactcattctctctctct
ctctctctctctctctctctctctctctctctctctc
gaattctcatgagctggaagagtttggagatcacacacacacacagacac
acacgcacacacacacaatcattttgtgaaactgaaaataaaacatctac
tatgctagggctgctgtgtctaaacacctcagaagggaacactgtctttg
agctgcagtcagtcagccccatggaaagcactgtggaggtggcttcccct
cccccaaccccttcttcctgaggctcccaggtgactgtgtctgttactag
ttaagaacaggaagagagtgaagcaaggtcactgctctctgctgtagacg
tcaaccccatgaaagatcacaggcaagcccgtctacacttttacaacatg
gttctgttttcagtgggttcgtctctgccagttcctgctctgagcccaag
gtcacaggctgaactgcatctcatgaggccacctcccaccatacagccat
acctcaacctcagagaccctggctccactacaatccttctccatcagaaa
tggtcagagctcaaacatgctcgatctgataagacaggatctggtagctt
atgaaaagctttattaagattagatctaagattccataaatccaaactta
aaagcttctaacttctaagaatttagaaattagatatgaactgtgtcttt
ttctaaccacgaccatattttaggattccttctaggatatgagatgattc
tgtcataggtagaaaaatggaaataagaaaaaaaatcttataagcgtgat
tttttttctttctacttttattttaacccaatgaagatgtgctcaaattt
gtctttggatgaagttccttaaacacttacaaattctagtttcttaaaac
caaggaagttgctgaaacttttcaaatgatcagaaaattccaaagaaagc
taggataaaggagtgatttttagtatcatttttttcatatttcagggtgt
cacacccctgaacattccacaggagagagactagctcacgttgctcacag
taggcccatgtctattttgtgtggagttttagtgtgactgtaagaagcat
tgtgaacccaatgtctgtacatgagagggactcatggatgctctggtttt
gtttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27942232_27942868
seq2: B6Ng01-147M19.b_45_681

seq1  GAATTCACTGAAATTGAAAGTTGTCAGAGAAATTGTACTGACACATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAATTGAAAGTTGTCAGAGAAATTGTACTGACACATATAT  50

seq1  TTGTAGGAAAGAAATAGAATATGTAAAGACATTCTAGCAAGGGAGGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGAAAGAAATAGAATATGTAAAGACATTCTAGCAAGGGAGGGAGA  100

seq1  ATGGAGAGGAATGTGATACAGCTCTCTCACTTCGAGAATGAAAATAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGGAATGTGATACAGCTCTCTCACTTCGAGAATGAAAATAGATC  150

seq1  CCAAGACTCACAAAGCACGGTAAATCACTTGACTTTATTATGCCAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTCACAAAGCACGGTAAATCACTTGACTTTATTATGCCAGCACA  200

seq1  GGGGTCTGAGTTCCAGCCCCAGAATGCACATGAAGCCAAATGTGGTGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTGAGTTCCAGCCCCAGAATGCACATGAAGCCAAATGTGGTGGCG  250

seq1  TGCATCTGTAATCCCAGCTCTGTCTCTAGAAAGCTTGGAGGCAAAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGTAATCCCAGCTCTGTCTCTAGAAAGCTTGGAGGCAAAGTCAG  300

seq1  AGGAATCTCAAAGGCCAGCTAGCCTGGGGTGGACAAGAAACCCTGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTCAAAGGCCAGCTAGCCTGGGGTGGACAAGAAACCCTGTCTCA  350

seq1  AAGTGGAAAGCAAAGACTGAAACCTGATATTGGCATGCATGTGTCCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAAGCAAAGACTGAAACCTGATATTGGCATGCATGTGTCCAGAT  400

seq1  ACACACACACACACACACACACACACACACACACACAAACACCATACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAAACACCATACGTG  450

seq1  TACATATATGAACATGAATGTTTTAAAGAAGAATCTAAATAAGAATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATGAACATGAATGTTTTAAAGAAGAATCTAAATAAGAATAATA  500

seq1  GATAATGAAGGAAGGAAAAAAGATAAGCTCAGCAAAGTGATGCTCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGAAGGAAGGAAAAAAGATAAGCTCAGCAAAGTGATGCTCCACAG  550

seq1  TTTCCAGTGGGGATTAGGGATGGTACATCCAAGACTCATTCTCTCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGGGGATTAGGGATGGTACATCCAAGACTCATTCTCTCTCTCT  600

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  637
      |||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  637

seq1: chr12_28094762_28095871
seq2: B6Ng01-147M19.g_69_1174 (reverse)

seq1  CCAAAGCAAAACCAGAGCATCCATGAGTCCCTTCTCATGTCAGGACATTG  50
      ||||| ||||||||||||||||||||||||| ||||||||   |||||||
seq2  CCAAA-CAAAACCAGAGCATCCATGAGTCCC-TCTCATGTACAGACATTG  48

seq1  GGGTCACATTGCTTTCTTTACAGTCACACTTAAACCTACACACAAAATAG  100
      || ||||| |||||   |||||||||||| |||| || ||||||||||||
seq2  GGTTCACAATGCTT--CTTACAGTCACAC-TAAAACTCCACACAAAATAG  95

seq1  ACATGGGCCTACTGTGAGCAACGTGAGCTAGTCTCTCTCCTGTGGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACATGGGCCTACTGTGAGCAACGTGAGCTAGTCTCTCTCCTGTGGAATGT  145

seq1  TCAGGGGTGTGAACACCCTGGAAATATG-AAAAAATGATACTAAAAATCA  199
      ||||||||||| ||||||| |||||||| |||||||||||||||||||||
seq2  TCAGGGGTGTG-ACACCCT-GAAATATGAAAAAAATGATACTAAAAATCA  193

seq1  CTCCTTTATCCTAGCTTTCTTTGGAATTTTCTGATCATTTG-AAAGTTTC  248
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCCTTTATCCTAGCTTTCTTTGGAATTTTCTGATCATTTGAAAAGTTTC  243

seq1  AGC-ACTTCCTTGGTTTTAAGAAACTAGAATTTGTAAGTGTTTAAGGAAC  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTTCCTTGGTTTTAAGAAACTAGAATTTGTAAGTGTTTAAGGAAC  293

seq1  TTCATCCAAAGACAAATTTGAGCACATCTTCATTGGGTTAAAATAAAAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAAAGACAAATTTGAGCACATCTTCATTGGGTTAAAATAAAAGT  343

seq1  AGAAAGAAAAAAAATCACGCTTATAAGATTTTTTTTCTTATTTCCATTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAAAAATCACGCTTATAAGATTTTTTTTCTTATTTCCATTTT  393

seq1  TCTACCTATGACAGAATCATCTCATATCCTAGAAGGAATCCTAAAATATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTATGACAGAATCATCTCATATCCTAGAAGGAATCCTAAAATATG  443

seq1  GTCGTGGTTAGAAAAAGACACAGTTCATATCTAATTTCTAAATTCTTAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGGTTAGAAAAAGACACAGTTCATATCTAATTTCTAAATTCTTAGA  493

seq1  AGTTAGAAGCTTTTAAGTTTGGATTTATGGAATCTTAGATCTAATCTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAGCTTTTAAGTTTGGATTTATGGAATCTTAGATCTAATCTTAA  543

seq1  TAAAGCTTTTCATAAGCTACCAGATCCTGTCTTATCAGATCGAGCATGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTTCATAAGCTACCAGATCCTGTCTTATCAGATCGAGCATGTT  593

seq1  TGAGCTCTGACCATTTCTGATGGAGAAGGATTGTAGTGGAGCCAGGGTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTGACCATTTCTGATGGAGAAGGATTGTAGTGGAGCCAGGGTCT  643

seq1  CTGAGGTTGAGGTATGGCTGTATGGTGGGAGGTGGCCTCATGAGATGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTGAGGTATGGCTGTATGGTGGGAGGTGGCCTCATGAGATGCAG  693

seq1  TTCAGCCTGTGACCTTGGGCTCAGAGCAGGAACTGGCAGAGACGAACCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTGTGACCTTGGGCTCAGAGCAGGAACTGGCAGAGACGAACCCA  743

seq1  CTGAAAACAGAACCATGTTGTAAAAGTGTAGACGGGCTTGCCTGTGATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACAGAACCATGTTGTAAAAGTGTAGACGGGCTTGCCTGTGATCT  793

seq1  TTCATGGGGTTGACGTCTACAGCAGAGAGCAGTGACCTTGCTTCACTCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGGTTGACGTCTACAGCAGAGAGCAGTGACCTTGCTTCACTCTC  843

seq1  TTCCTGTTCTTAACTAGTAACAGACACAGTCACCTGGGAGCCTCAGGAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTCTTAACTAGTAACAGACACAGTCACCTGGGAGCCTCAGGAAG  893

seq1  AAGGGGTTGGGGGAGGGGAAGCCACCTCCACAGTGCTTTCCATGGGGCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTTGGGGGAGGGGAAGCCACCTCCACAGTGCTTTCCATGGGGCTG  943

seq1  ACTGACTGCAGCTCAAAGACAGTGTTCCCTTCTGAGGTGTTTAGACACAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGCAGCTCAAAGACAGTGTTCCCTTCTGAGGTGTTTAGACACAG  993

seq1  CAGCCCTAGCATAGTAGATGTTTTATTTTCAGTTTCACAAAATGATTGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTAGCATAGTAGATGTTTTATTTTCAGTTTCACAAAATGATTGTG  1043

seq1  TGTGTGTGCGTGTGTGTCTGTGTGTGTGTGTGATCTCCAAACTCTTCCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCGTGTGTGTCTGTGTGTGTGTGTGATCTCCAAACTCTTCCAG  1093

seq1  CTCATGAGAATTC  1110
      |||||||||||||
seq2  CTCATGAGAATTC  1106