BAC Information

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BAC

Clone NameB6Ng01-148K17
Chromosome12 (Build37)
Map Location 111,616,824 - 111,819,575
singlet/doubletdoublet
Overlap geneLOC100040799, Ppp2r5c
Upstream geneDlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245
Downstream gene9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148K17.bB6Ng01-148K17.g
ACCDH945211DH945212
length1,081771
definitionDH945211|Mus musculus domesticus DNA, BAC clone: B6Ng01-148K17, 5' end.DH945212|Mus musculus domesticus DNA, BAC clone: B6Ng01-148K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,616,824 - 111,617,904)(111,818,808 - 111,819,575)
sequence
gaattccaccacttgagaatgcatctccctttccccttcctgggagccat
tacacccattggccgtcttaaaaaccctgcatgacctttgtcctagaaat
tacttctgggaatcgatattaataataaagacagttcctcgtctgataat
ttggtattgtacatggacaaagcagaaagggccttacaggagcaaagggg
gttaaactgtacaatctctgcttcagccatgccctagaatatgaataaat
acacagggatggctcagcggttaagcacactggctgctcttccagaggac
ctggttcgattcccagcaccctcatggcagctctgaaccatgtgtaattc
caggtccagggatccagtcttcttctgcgcacacacacacccatggtaca
catgttcacacatgagtgcaaagcactcacacacataagatacagataaa
tcggaggctggtgagatggctcagcggttaagagtgccgactgctcttcc
aaaagtcctgagttcaaatctcagcaaccacatggtggctcacaaccatc
cgtaacaaaatctgatgccctcttctggagtgtctgaagacagctacagt
gtacttacatttaataaataaataaataaatattttttttaaaaaagata
cagataaatcaatcaggcactgtgtgaaagtgtctcagatggctgtcaat
aaaaaaaaagcaaacagaagctgggcagtggtggtgcacacctttaatcc
tagcacttggaaggcaaaagcaggcagatctctgagttcaaggccagcct
ggtctacagggtgagttccaggacagccagggctacacagagaaaccctg
tctcgaaaaccaaaaaaaaaaagcagacagcaaagcaccgtggagtgaca
ccatcagttcaaaaacatggctacatctaaggctgtacctacgtatgccg
aggaaaattgacataaattgctaattgacgttcctttcttggggatttct
cctacctttaaaagtgtgctgcctttttttcccactcaacaatgaatcat
taatgcctctctgtttctgaaacgtgtgctg
gaattcttagatcctgtgatctttatccactcgagagccttgttgaagga
tcatgtgtaagtaggtgaaaaactgattctgcaactaacatgaacacgtc
attccaacgtggcggttctcctcaaggtgggctgaggaagcacttctcag
aaccctcccttgcgctgaggtggaaccctggcctctaccacagactatga
aatatggctttcggtagacattaaggtaagcaggacatggtgaccgtgcc
attaaccaaaggaaagaaacactgtggacggccccagcgcaaaagttggc
ctctttcccggcaggcagctagaacgggaaagcgaggagccatctctgag
agacctaaccaaccaccacgggcggctggcacagcaagcgtggggacagc
gtcagggttgtaaagggaggagacaccttttaccatgtgcgtttgatttg
ccacagcatcggtgttacctaccacagaatccctatttcagaggaccaca
gggtctactgggtacgagaaggtgacagtcagggtgctttcctacagctc
tgactttggatctcactcagggctgtgctggggtggtgacaacatggtga
tgacactgttcaccgactcccccagccccctgcttggccagcagggccag
agaagccaccattgtttgaactcctaatctcgagctgaggcggacgtgca
ttattgcctacagaacggggtcagaggaagcttttgacattgagtgttaa
ttgactggtatggcacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_111616824_111617904
seq2: B6Ng01-148K17.b_48_1118

seq1  GAATTCCACCACTTGAGAATGCATCTCCCTTTCCCCTTCCTGGGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCACTTGAGAATGCATCTCCCTTTCCCCTTCCTGGGAGCCAT  50

seq1  TACACCCATTGGCCGTCTTAAAAACCCTGCATGACCTTTGTCCTAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCATTGGCCGTCTTAAAAACCCTGCATGACCTTTGTCCTAGAAAT  100

seq1  TACTTCTGGGAATCGATATTAATAATAAAGACAGTTCCTCGTCTGATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGGGAATCGATATTAATAATAAAGACAGTTCCTCGTCTGATAAT  150

seq1  TTGGTATTGTACATGGACAAAGCAGAAAGGGCCTTACAGGAGCAAAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTGTACATGGACAAAGCAGAAAGGGCCTTACAGGAGCAAAGGGG  200

seq1  GTTAAACTGTACAATCTCTGCTTCAGCCATGCCCTAGAATATGAATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTGTACAATCTCTGCTTCAGCCATGCCCTAGAATATGAATAAAT  250

seq1  ACACAGGGATGGCTCAGCGGTTAAGCACACTGGCTGCTCTTCCAGAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGATGGCTCAGCGGTTAAGCACACTGGCTGCTCTTCCAGAGGAC  300

seq1  CTGGTTCGATTCCCAGCACCCTCATGGCAGCTCTGAACCATGTGTAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCGATTCCCAGCACCCTCATGGCAGCTCTGAACCATGTGTAATTC  350

seq1  CAGGTCCAGGGATCCAGTCTTCTTCTGCGCACACACACACCCATGGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCAGGGATCCAGTCTTCTTCTGCGCACACACACACCCATGGTACA  400

seq1  CATGTTCACACATGAGTGCAAAGCACTCACACACATAAGATACAGATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCACACATGAGTGCAAAGCACTCACACACATAAGATACAGATAAA  450

seq1  TCGGAGGCTGGTGAGATGGCTCAGCGGTTAAGAGTGCCGACTGCTCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGGCTGGTGAGATGGCTCAGCGGTTAAGAGTGCCGACTGCTCTTCC  500

seq1  AAAAGTCCTGAGTTCAAATCTCAGCAACCACATGGTGGCTCACAACCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCTGAGTTCAAATCTCAGCAACCACATGGTGGCTCACAACCATC  550

seq1  CGTAACAAAATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACAAAATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGT  600

seq1  GTACTTACATTTAATAAATAAATAAATAAATA-TTTTTTTAAAAAAGATA  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTACTTACATTTAATAAATAAATAAATAAATATTTTTTTTAAAAAAGATA  650

seq1  CAGATAAATCAATCAGGCACTGTGTGAAAGTGTCTCAGATGGCTGTCAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATCAATCAGGCACTGTGTGAAAGTGTCTCAGATGGCTGTCAAT  700

seq1  AAAAAAAAAGCAAACAGAAGCTGGGCAGTGGTGGTGCACACCTTTAATCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGCAAACAGAAGCTGGGCAGTGGTGGTGCACACCTTTAATCC  750

seq1  TAGCACTTGGAAGGCAAAAGCAGGCAGATCTCTGAGTTCAAGGCCAGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTTGGAAGGCAAAAGCAGGCAGATCTCTGAGTTCAAGGCCAGCCT  800

seq1  GGTCTACAGGGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGGGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  850

seq1  TCTCGAAAAACCAAAAAAAAAAAAAGCAGACAGCAAAGCACCGTGGAGTG  899
      ||||||||| |   ||||||||||||||||||||||||||||||||||||
seq2  TCTCGAAAACC---AAAAAAAAAAAGCAGACAGCAAAGCACCGTGGAGTG  897

seq1  AACACCATCAGGTTCCAAAAACATGGCTACATCTAAGGCTGTACCTAACG  949
       ||||||||||  | ||||||||||||||||||||||||||||||| |||
seq2  -ACACCATCAG--TTCAAAAACATGGCTACATCTAAGGCTGTACCT-ACG  943

seq1  TATGCCGAGGAAAAATGACATAAAATGCTAA-TGACGTTCCTTTCTGGGG  998
      |||||||||||||| ||||||||| |||||| |||||||||||||| |||
seq2  TATGCCGAGGAAAATTGACATAAATTGCTAATTGACGTTCCTTTCTTGGG  993

seq1  GATTTCTCTCACCTTTAAAAAGTTGTCTGCCTTTTTTTTCCCCACTCATA  1048
      ||||||||  |||||| ||||||   ||||||||||||  |||||||| |
seq2  GATTTCTCCTACCTTT-AAAAGTGTGCTGCCTTTTTTT--CCCACTCA-A  1039

seq1  CAATGAATCAGTAATGCATCTCTTGTTTCTGAA  1081
      |||||||||| |||||| |||| ||||||||||
seq2  CAATGAATCATTAATGCCTCTC-TGTTTCTGAA  1071

seq1: chr12_111818808_111819575
seq2: B6Ng01-148K17.g_68_838 (reverse)

seq1  TGTGTGTGCCATACCAGTCAGTT-ACACTCAATGTC-AAAGCTTCCTCTG  48
      |||||||||||||||||||| || |||||||||||| |||||||||||||
seq2  TGTGTGTGCCATACCAGTCAATTAACACTCAATGTCAAAAGCTTCCTCTG  50

seq1  ACCCCGTTCTGTAGGCAATAATGCACGTCCGCCTCAGCTCGAGATTAGGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTTCTGTAGGCAATAATGCACGTCCGCCTCAGCTCGAGATTAGGA  100

seq1  GTTCAAACAATGGTGGCTTCTCTGGCCCTGCTGGCCAAGCAGGGGGCTGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACAATGGTGGCTTCTCTGGCCCTGCTGGCCAAGCAGGGGGCTGG  150

seq1  GGGAGTCGGTG-ACAGTGTCATCACCATGTTGTCACCACCCCAGCACAGC  197
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCGGTGAACAGTGTCATCACCATGTTGTCACCACCCCAGCACAGC  200

seq1  CCTGAGTGAGATCCAAAGTCAGAGCTGTAGGAAAGCACCCTGACTGTCAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGAGATCCAAAGTCAGAGCTGTAGGAAAGCACCCTGACTGTCAC  250

seq1  CTTCTCGTACCCAGTAGACCCTGTGGTCCTCTGAAATAGGGATTCTGTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGTACCCAGTAGACCCTGTGGTCCTCTGAAATAGGGATTCTGTGG  300

seq1  TAGGTAACACCGATGCTGTGGCAAATCAAACGCACATGGTAAAAGGTGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACACCGATGCTGTGGCAAATCAAACGCACATGGTAAAAGGTGTC  350

seq1  TCCTCCCTTTACAACCCTGACGCTGTCCCCACGCTTGCTGTGCCAGCCGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTTTACAACCCTGACGCTGTCCCCACGCTTGCTGTGCCAGCCGC  400

seq1  CCGTGGTGGTTGGTTAGGTCTCTCAGAGATGGCTCCTCGCTTTCCCGTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGTGGTTGGTTAGGTCTCTCAGAGATGGCTCCTCGCTTTCCCGTTC  450

seq1  TAGCTGCCTGCCGGGAAAGAGGCCAACTTTTGCGCTGGGGCCGTCCACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCCTGCCGGGAAAGAGGCCAACTTTTGCGCTGGGGCCGTCCACAG  500

seq1  TGTTTCTTTCCTTTGGTTAATGGCACGGTCACCATGTCCTGCTTACCTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTCCTTTGGTTAATGGCACGGTCACCATGTCCTGCTTACCTTA  550

seq1  ATGTCTACCGAAAGCCATATTTCATAGTCTGTGGTAGAGGCCAGGGTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACCGAAAGCCATATTTCATAGTCTGTGGTAGAGGCCAGGGTTCC  600

seq1  ACCTCAGCGCAAGGGAGGGTTCTGAGAAGTGCTTCCTCAGCCCACCTTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCGCAAGGGAGGGTTCTGAGAAGTGCTTCCTCAGCCCACCTTGA  650

seq1  GGAGAACCGCCACGTTGGAATGACGTGTTCATGTTAGTTGCAGAATCAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACCGCCACGTTGGAATGACGTGTTCATGTTAGTTGCAGAATCAGT  700

seq1  TTTTCACCTACTTACACATGATCCTTCAACAAGGCTCTCGAGTGGATAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCTACTTACACATGATCCTTCAACAAGGCTCTCGAGTGGATAAA  750

seq1  GATCACAGGATCTAAGAATTC  768
      |||||||||||||||||||||
seq2  GATCACAGGATCTAAGAATTC  771