BAC Information

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BAC

Clone NameB6Ng01-148P08
Chromosome12 (Build37)
Map Location 85,203,622 - 85,334,413
singlet/doubletdoublet
Overlap geneLOC100042325, 2410016O06Rik, Acot2
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb
Downstream geneAcot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148P08.bB6Ng01-148P08.g
ACCDH945427DH945428
length1,0641,201
definitionDH945427|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P08, 5' end.DH945428|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,203,622 - 85,204,685)(85,333,181 - 85,334,413)
sequence
gaattcctgcaacactttattttcattaagtaatgagaacaattattttg
tcttcttaaaaataaattacagctgggcatgtggtacactcctataatcc
tagtatttgagaggaggtaaaagaagcaagggttcaaggtacatcagcta
gattgggaatttagaagtcttggctcaaaaacatacaacatcaaccaacc
aatcattctctatgtgtcttagtcagggtttctattctgcataaaccatc
atgaccaaggagcaagttggggaggaaagggtttattcagcttacacttc
cacattgctgttcaaaggaagccaggacagaaactctggcaggtcgggaa
gcaggagctgatgcagaggctatagaggaatgtttcttactggtttgcct
tgttcagcttgctttcttatagaatggaagactaccagcccagggacgtt
accacccacaatgggccctccccccttgctcactaattgagaaaatgcct
tacagccggatctcatggaggcatttcctcaagggaggctcctttctctg
tgataattccagtctgtgtcaagctgacacacaaaaccagccagtatact
aactatatacattttgggttttttaacaactcagatatataaagagatgt
taacttagaagtctccatcaccccctagagacagggtttcctctgtgttg
acctgaccttcctaagaactcactatgtaaaccaggctgggcctagaact
cacagagattcatctacacctgcctcctgaatggtggggtttcacctcac
acttgaaaacaaaacaaacaaaaataccaaaacaaccacatgaaacaaaa
tcgcagacactctaccactttagccataagcctctcctttatattttcct
aggaatgaggatatttacttagctaatcacagtacagctaaataaatcct
tattacaacaatgtaacactttctaataaaatatttaccttagaactact
tattctcacccatggaaggagttacagagacaagttcagagcgagaccga
gtaatgacctccca
gaattctgggcactatggaagaaagacgaatgcattaccaccaagctcta
tatatcctcagtccttcataggcacttattatattgagaaaaaacataag
ctgggcgtggctttactcccagcacttgggaggcagaggcaggccgatct
ctgaattcaggcccagcctggtctcggccaagggtacacagagaaaccct
gtctcaaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaaaagaaaaaga
aaaaagaaaaaagaaagaaactttaaaaaattagaatatgttcaaatgaa
ctaacctgaactgacattgtgataatatatatgaggtttcccccaaacca
tcaactaataggttatattttagaggacagtccctaactcttgctaccca
actgtttgtggaagaaagtctggagctgctgccatgcgtccacctgggcc
acggcatgagccctgggctcccctccaaaggtgatgttggcacccaccag
gaggtgcatgccagcgctgcacagcgggaagtaagggggctcgatgtaat
gccctgctgctgggtagcagatgatctggggcttctccttcccgtgcgcc
tgcaggcgtttggagatctcatcagcatagaactcgctcttccagttgtg
gtcgtcctgacctacgaggaacaggaaggtcgtgtcagacctttccacgg
gaatgaagctcttcttgtctaccagagggctttgcagagcttccacgaca
tccaagagaccatctttggtcattttgacttggtttctcagaagggacac
agggggtatagtctcatctttgtaggagatggtgttcccaacagcagcca
cggagccattgatgaccacagcagttggtgatgcccttcaggaaggaggc
catagcaaggccaagttcacccccttggaatcccagcagcccaattccag
gtcttttacctgagaaagaacaaatgaaatggagatttagtcaggaacag
tattggagcagtgagtagacttagccagaaaggtccaataatccttgggg
cacttcagcatttctttttcaagccacatgaggatgagctacattggcac
ttaactgtgagtcaatgaaccagaaatctagaacactttccgttgtcttg
atctccatgcaaaatgaccgtttatattggccacaatcatcggtattttg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_85203622_85204685
seq2: B6Ng01-148P08.b_48_1111

seq1  GAATTCCTGCAACACTTTATTTTCATTAAGTAATGAGAACAATTATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAACACTTTATTTTCATTAAGTAATGAGAACAATTATTTTG  50

seq1  TCTTCTTAAAAATAAATTACAGCTGGGCATGTGGTACACTCCTATAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTAAAAATAAATTACAGCTGGGCATGTGGTACACTCCTATAATCC  100

seq1  TAGTATTTGAGAGGAGGTAAAAGAAGCAAGGGTTCAAGGTACATCAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTGAGAGGAGGTAAAAGAAGCAAGGGTTCAAGGTACATCAGCTA  150

seq1  GATTGGGAATTTAGAAGTCTTGGCTCAAAAACATACAACATCAACCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGAATTTAGAAGTCTTGGCTCAAAAACATACAACATCAACCAACC  200

seq1  AATCATTCTCTATGTGTCTTAGTCAGGGTTTCTATTCTGCATAAACCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCTCTATGTGTCTTAGTCAGGGTTTCTATTCTGCATAAACCATC  250

seq1  ATGACCAAGGAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAAGGAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTC  300

seq1  CACATTGCTGTTCAAAGGAAGCCAGGACAGAAACTCTGGCAGGTCGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGCTGTTCAAAGGAAGCCAGGACAGAAACTCTGGCAGGTCGGGAA  350

seq1  GCAGGAGCTGATGCAGAGGCTATAGAGGAATGTTTCTTACTGGTTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCTGATGCAGAGGCTATAGAGGAATGTTTCTTACTGGTTTGCCT  400

seq1  TGTTCAGCTTGCTTTCTTATAGAATGGAAGACTACCAGCCCAGGGACGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTTGCTTTCTTATAGAATGGAAGACTACCAGCCCAGGGACGTT  450

seq1  ACCACCCACAATGGGCCCTCCCCCCTTGCTCACTAATTGAGAAAATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCACAATGGGCCCTCCCCCCTTGCTCACTAATTGAGAAAATGCCT  500

seq1  TACAGCCGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTCCTTTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTCCTTTCTCTG  550

seq1  TGATAATTCCAGTCTGTGTCAAGCTGACACACAAAACCAGCCAGTATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTCCAGTCTGTGTCAAGCTGACACACAAAACCAGCCAGTATACT  600

seq1  AACTATATACATTTTGGGTTTTTTAACAACTCAGATATATAAAGAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATACATTTTGGGTTTTTTAACAACTCAGATATATAAAGAGATGT  650

seq1  TAACTTAGAAGTCTCCATCACCCCCTAGAGACAGGGTTTCCTCTGTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGAAGTCTCCATCACCCCCTAGAGACAGGGTTTCCTCTGTGTTG  700

seq1  ACCTGACCTTCCTAAGAACTCACTATGTAAACCAGGCT-GGCCTAGAACT  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCTGACCTTCCTAAGAACTCACTATGTAAACCAGGCTGGGCCTAGAACT  750

seq1  CACAGAGATTCATCTACACCTGCCTCCTGAATGGT-GGGTTTCACCTCAC  798
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACAGAGATTCATCTACACCTGCCTCCTGAATGGTGGGGTTTCACCTCAC  800

seq1  ACTTGAAAAACAAAACAAACAAAAATACCAAAACAACCACATGAAACAAA  848
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTG-AAAACAAAACAAACAAAAATACCAAAACAACCACATGAAACAAA  849

seq1  ATCGCAGACACTCTACCACTTTAGCCATAAGCCTCTCC-TTATATTTTCC  897
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCGCAGACACTCTACCACTTTAGCCATAAGCCTCTCCTTTATATTTTCC  899

seq1  TAGGAATGAGGATATTTACTTAGCTAATCACAGTACAGCTAAATAAATCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGAGGATATTTACTTAGCTAATCACAGTACAGCTAAATAAATCC  949

seq1  TTATTACAACAATGTTACACTTTCTATAAAATTATTTACCTTAGAACTAC  997
      ||||||||||||||| ||||||||||  ||| ||||||||||||||||||
seq2  TTATTACAACAATGTAACACTTTCTAATAAAATATTTACCTTAGAACTAC  999

seq1  TTATTCTCACCCATGGAAGGAGTTACAGAGACAAAGTTCAGAGCGAGACA  1047
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TTATTCTCACCCATGGAAGGAGTTACAGAGAC-AAGTTCAGAGCGAGACC  1048

seq1  GAAGTAATGACCACCCA  1064
      | |||||||||| ||||
seq2  G-AGTAATGACCTCCCA  1064

seq1: chr12_85333181_85334413
seq2: B6Ng01-148P08.g_68_1268 (reverse)

seq1  GCAAAATACCAGTGATTGTGGCAGAATTGAAAGGCCACATCGGTGCTCCT  50
      ||||||||||  ||||||||||  |||  |||        ||||  |  |
seq2  GCAAAATACCGATGATTGTGGC-CAATATAAA--------CGGTCAT--T  39

seq1  GTCCAGTGAGAGATC-AGACAGCAGGAATGTGTGTTTTCCTTAG-TTTCT  98
       | || || |||||| ||||| | |||| |||    |||  ||| |||||
seq2  TTGCA-TG-GAGATCAAGACAAC-GGAAAGTG----TTC--TAGATTTCT  80

seq1  TGGGTCCATTGCCTCAACAGTTTAGTGGCCAATGTAGCTCCATTCCTCCA  148
        ||| ||||| ||| |||||| ||| |||||||||||||   |||| ||
seq2  --GGTTCATTGACTC-ACAGTTAAGT-GCCAATGTAGCTC--ATCCT-CA  123

seq1  TGGTGGCTTTGAAAAGAAAATGCTGATGTTGGCCCAGGGTTATTTGA-CT  197
      | ||||| |||||||  ||||||||| ||   || ||| ||||| || ||
seq2  T-GTGGC-TTGAAAAAGAAATGCTGAAGTGCCCCAAGGATTATTGGACCT  171

seq1  TTCTGGCTAGGTCTACTCACTGCT-CAATACTGTTCCTGGACTAAATCTC  246
      ||||||||| |||||||||||||| ||||||||||||| |||||||||||
seq2  TTCTGGCTAAGTCTACTCACTGCTCCAATACTGTTCCT-GACTAAATCTC  220

seq1  CATTTTTCATTTGTTTCTTTCTCAGGTAAAAGGACCTGGAATTGGGCTGC  296
      ||  ||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  CA--TTTCATTTG-TTCTTTCTCAGGTAAAA-GACCTGGAATTGGGCTGC  266

seq1  TTGGGATTTCCAAAGGGGGTGAACTTGGCCTTGCTATGGCCTCCTTCCTG  346
       |||||||  | ||||||||||||||||||||||||||||||||||||||
seq2  -TGGGATT--CCAAGGGGGTGAACTTGGCCTTGCTATGGCCTCCTTCCTG  313

seq1  AAGGGCATCA-CAGCTGCTGTGGTCATCAATGGCTCCGTGGCTGCTGTTG  395
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  AAGGGCATCACCAACTGCTGTGGTCATCAATGGCTCCGTGGCTGCTGTTG  363

seq1  GGAACACCATCTCCTACAAGGATGAGACTATACCCCCTGTGTCCCTTCTG  445
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGAACACCATCTCCTACAAAGATGAGACTATACCCCCTGTGTCCCTTCTG  413

seq1  AGAAACCAAGTCAAAATGACCAAAGATGGTCTCTTGGATGTCGTGGAAGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAAGTCAAAATGACCAAAGATGGTCTCTTGGATGTCGTGGAAGC  463

seq1  TCTGCAAAGCCCTCTGGTAGACAAGAAGAGCTTCATTCCCGTGGAAAGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAGCCCTCTGGTAGACAAGAAGAGCTTCATTCCCGTGGAAAGGT  513

seq1  CTGACACGACCTTCCTGTTCCTCGTAGGTCAGGACGACCACAACTGGAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACGACCTTCCTGTTCCTCGTAGGTCAGGACGACCACAACTGGAAG  563

seq1  AGCGAGTTCTATGCTGATGAGATCTCCAAACGCCTGCAGGCGCACGGGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGTTCTATGCTGATGAGATCTCCAAACGCCTGCAGGCGCACGGGAA  613

seq1  GGAGAAGCCCCAGATCATCTGCTACCCAGCAGCAGGGCATTACATCGAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCCCCAGATCATCTGCTACCCAGCAGCAGGGCATTACATCGAGC  663

seq1  CCCCTTACTTCCCGCTGTGCAGCGCTGGCATGCACCTCCTGGTGGGTGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTACTTCCCGCTGTGCAGCGCTGGCATGCACCTCCTGGTGGGTGCC  713

seq1  AACATCACCTTTGGAGGGGAGCCCAGGGCTCATGCCGTGGCCCAGGTGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACCTTTGGAGGGGAGCCCAGGGCTCATGCCGTGGCCCAGGTGGA  763

seq1  CGCATGGCAGCAGCTCCAGACTTTCTTCCACAAACAGTTGGGTAGCAAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGGCAGCAGCTCCAGACTTTCTTCCACAAACAGTTGGGTAGCAAGA  813

seq1  GTTAGGGACTGTCCTCTAAAATATAACCTATTAGTTGATGGTTTGGGGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGACTGTCCTCTAAAATATAACCTATTAGTTGATGGTTTGGGGGA  863

seq1  AACCTCATATATATTATCACAATGTCAGTTCAGGTTAGTTCATTTGAACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCATATATATTATCACAATGTCAGTTCAGGTTAGTTCATTTGAACA  913

seq1  TATTCTAATTTTTTAAAGTTTCTTTCTTTTTTCTTTTTTCTTTTTCTTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAATTTTTTAAAGTTTCTTTCTTTTTTCTTTTTTCTTTTTCTTTT  963

seq1  TTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTG  1013

seq1  TGTACCCTTGGCCGAGACCAGGCTGGGCCTGAATTCAGAGATCGGCCTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCTTGGCCGAGACCAGGCTGGGCCTGAATTCAGAGATCGGCCTGC  1063

seq1  CTCTGCCTCCCAAGTGCTGGGAGTAAAGCCACGCCCAGCTTATGTTTTTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTGCTGGGAGTAAAGCCACGCCCAGCTTATGTTTTTT  1113

seq1  CTCAATATAATAAGTGCCTATGAAGGACTGAGGATATATAGAGCTTGGTG  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATATAATAAGTGCCTATGAAGGACTGAGGATATATAGAGCTTGGTG  1163

seq1  GTAATGCATTCGTCTTTCTTCCATAGTGCCCAGAATTC  1233
      ||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCATTCGTCTTTCTTCCATAGTGCCCAGAATTC  1201