BAC Information

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BAC

Clone NameB6Ng01-150B20
Chromosome12 (Build37)18 (Build37)
Map Location 106,773,230 - 106,774,14923,507,328 - 23,507,751
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik
Downstream geneBdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150B20.bB6Ng01-150B20.g
ACCDH946277DH946278
length920971
definitionDH946277|Mus musculus domesticus DNA, BAC clone: B6Ng01-150B20, 5' end.DH946278|Mus musculus domesticus DNA, BAC clone: B6Ng01-150B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,773,230 - 106,774,149)(23,507,328 - 23,507,751)
sequence
gaattcctcatgcaaatgaggcatccccagcaccctggccttggccaatg
atgtgattcactctgatagcccctactccaccccaagggtctaaatagcc
tttgtcccgcctcccactattcaaataagctgtctcacagaagcagcttc
tcaagagcctgttctctgctgcctgaggtttcttcatacccttctgccat
gcttccctctcaggatccaccggatcgattgctggtcgatcgaggaagcg
gccaatcagagaagcagagcaggaacacgagtcttgcaacgctaggggac
ctgtcctttaaccttagccctcccggcccagagctgaagccctgctcaca
aaggcggatcatgtaggggaggtatatgtccactgtggctaaaatcaccc
ccttgctggaccactcgtgagagaagcagatggcaggagactgcagaggt
ttggaactccacgatggtagcggtggagtcagttttaaatgtgttgtcct
gtcttgcgttccttggcagagctgtcacaaagttacatgcccagcacttg
agacaccctacctccaccatttgagactggatgtaagcagtctcaagact
tatattctccagtcgctctttgtaaattcctttttttaaacagttgtgta
accctccactaagcggattcagtcacagtttacttcattcctattattag
gaattcgagctgtttccacattatgatggtaacatggcgagcccctcctc
tgttcctacgggctgagtacctggatgtgcaagccccaccttctgcttgg
gatgggcctgctgtggtggaacatgataagacacagatgtgttccatttg
accccagtgcccaaacacctttttggtgtttaatctctctctctctctct
ctctctctctctctctctct
gaattcaggactggaactcaagcaggtcaggaagcaggagctgatgcaga
ggccatggagggatgttctttactggcttgcttcctctggcttgctcagc
ctgctttcttatagaaccaagactaccagcccagagatggcaccacccac
aaggggacctccccacttgatcactaattgagaaaatgtagccgggtgtg
gtggcgcacgcctttaatcccagcactcgggaggcagaggcaggcggatt
tctgagttcgaggccagcctggtctacaaagtgagttccaggacagccag
ggctacatggagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaa
aagagaaaatgccccttacagctggatctcatggaggtatttccccaact
gaagttcctttctctgtgataactccagcctgtgtcaagttgacacaaaa
ccagccagtacacatctttttttttttttttaatctatatagggccatga
aggcctgcaaccacaattctctgggtacagaggtggaaggatctgaagtg
aaagctatccctgggtacacagtgagtctgaggcagcctggaccatgtaa
gatgctgtctcagaagcaaaacaacaaaacaacacatgcaaacctcacca
agctttggtggtgtgtaaaataataaatcttccctagagttgaatggttg
aggcatgctccttctaacataactgcagccattttgtattcagactcaca
tgttactcacaaggtgaaattcaggtcatagttactacttcaactgacac
taaagaatgttactaataaagccaaacatcccttgcaccctgttatctca
gcgttcttgaaatccccctgctcagcatctatccacctgccctcgtactc
actcgggaccatcagcttgaaggtgagctgacaagactgtctagttacca
aatgctgtaaaccccctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106773230_106774149
seq2: B6Ng01-150B20.b_46_965

seq1  GAATTCCTCATGCAAATGAGGCATCCCCAGCACCCTGGCCTTGGCCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATGCAAATGAGGCATCCCCAGCACCCTGGCCTTGGCCAATG  50

seq1  ATGTGATTCACTCTGATAGCCCCTACTCCACCCCAAGGGTCTAAATAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTCACTCTGATAGCCCCTACTCCACCCCAAGGGTCTAAATAGCC  100

seq1  TTTGTCCCGCCTCCCACTATTCAAATAAGCTGTCTCACAGAAGCAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCGCCTCCCACTATTCAAATAAGCTGTCTCACAGAAGCAGCTTC  150

seq1  TCAAGAGCCTGTTCTCTGCTGCCTGAGGTTTCTTCATACCCTTCTGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGCCTGTTCTCTGCTGCCTGAGGTTTCTTCATACCCTTCTGCCAT  200

seq1  GCTTCCCTCTCAGGATCCACCGGATCGATTGCTGGTCGATCGAGGAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTCTCAGGATCCACCGGATCGATTGCTGGTCGATCGAGGAAGCG  250

seq1  GCCAATCAGAGAAGCAGAGCAGGAACACGAGTCTTGCAACGCTAGGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCAGAGAAGCAGAGCAGGAACACGAGTCTTGCAACGCTAGGGGAC  300

seq1  CTGTCCTTTAACCTTAGCCCTCCCGGCCCAGAGCTGAAGCCCTGCTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTAACCTTAGCCCTCCCGGCCCAGAGCTGAAGCCCTGCTCACA  350

seq1  AAGGCGGATCATGTAGGGGAGGTATATGTCCACTGTGGCTAAAATCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGGATCATGTAGGGGAGGTATATGTCCACTGTGGCTAAAATCACCC  400

seq1  CCTTGCTGGACCACTCGTGAGAGAAGCAGATGGCAGGAGACTGCAGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGGACCACTCGTGAGAGAAGCAGATGGCAGGAGACTGCAGAGGT  450

seq1  TTGGAACTCCACGATGGTAGCGGTGGAGTCAGTTTTAAATGTGTTGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTCCACGATGGTAGCGGTGGAGTCAGTTTTAAATGTGTTGTCCT  500

seq1  GTCTTGCGTTCCTTGGCAGAGCTGTCACAAAGTTACATGCCCAGCACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCGTTCCTTGGCAGAGCTGTCACAAAGTTACATGCCCAGCACTTG  550

seq1  AGACACCCTACCTCCACCATTTGAGACTGGATGTAAGCAGTCTCAAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCTACCTCCACCATTTGAGACTGGATGTAAGCAGTCTCAAGACT  600

seq1  TATATTCTCCAGTCGCTCTTTGTAAATTCCTTTTTTTAAACAGTTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTCCAGTCGCTCTTTGTAAATTCCTTTTTTTAAACAGTTGTGTA  650

seq1  ACCCTCCACTAAGCGGATTCAGTCACAGTTTACTTCATTCCTATTATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCACTAAGCGGATTCAGTCACAGTTTACTTCATTCCTATTATTAG  700

seq1  GAATTCGAGCTGTTTCCACATTATGATGGTAACATGGCGAGCCCCTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCGAGCTGTTTCCACATTATGATGGTAACATGGCGAGCCCCTCCTC  750

seq1  TGTTCCTACGGGCTGAGTACCTGGATGTGCAAGCCCCACCTTCTGCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTACGGGCTGAGTACCTGGATGTGCAAGCCCCACCTTCTGCTTGG  800

seq1  GATGGGCCTGCTGTGGTGGAACATGATAAGACACAGATGTGTTCCATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCCTGCTGTGGTGGAACATGATAAGACACAGATGTGTTCCATTTG  850

seq1  ACCCCAGTGCCCAAACACCTTTTTGGTGTTTAATCTCTCTCTCTCTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTGCCCAAACACCTTTTTGGTGTTTAATCTCTCTCTCTCTCTCT  900

seq1  CTCTCTCTCTCTCTCTCTCT  920
      ||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCT  920

seq1: chr18_23507328_23507751
seq2: B6Ng01-150B20.g_264_708

seq1  GTGGTGGTGCACGCCTTTAATCCCAGCACTTGGAAGGCAGAGGTAGGCAG  50
      ||||||| |||||||||||||||||||||| || ||||||||| |||| |
seq2  GTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGG  50

seq1  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTAAGTTCCAGGACAGC  100
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC  100

seq1  CAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCATAAAAACAAAACAA  150
      |||||||| |  ||||||||||||||| |||||||| ||||| |||| ||
seq2  CAGGGCTACATGGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAA  150

seq1  AACAAAACAAAA-----ACAAAAACAAAAACAAAAAAACGGA---AAAAA  192
      || || | ||||        | | |   | |  |   | | |       |
seq2  AAAAAGAGAAAATGCCCCTTACAGCTGGATCTCATGGAGGTATTTCCCCA  200

seq1  AAACATGTTTATTTATTTGTGTGTGTATCTTCATGAATTTATGGTGCCTG  242
      |   | |||  ||| | ||||    || || ||            |||||
seq2  ACTGAAGTTCCTTTCTCTGTG---ATAACTCCA------------GCCTG  235

seq1  AAAGGGCCAGAAGAAAGTAATAGATTCTCAAGAACAGGAGTTAATGATAA  292
          | | ||  || |  ||   |    | || |||    ||  |  |  
seq2  ---TGTCAAGTTGACACAAA---ACCAGCCAGTACACATCTTTTTTTTTT  279

seq1  CTTATGAGCTACCATATAGGTGC--TAGGGACT-AAACCAAAGTCCACTG  339
       || | | ||   |||||||  |   | || ||  ||||| | | | |||
seq2  TTTTTAATCT---ATATAGGGCCATGAAGGCCTGCAACCACAATTCTCTG  326

seq1  G---AAGAGTAGTATCTATTTCTAATG---GCTAAGCATCTCTACA----  379
      |    ||||  | |   || |  | ||   ||||  | |   ||||    
seq2  GGTACAGAGGTGGAAGGATCTGAAGTGAAAGCTATCCCTGGGTACACAGT  376

seq1  ---TC--------------CCA--TAAGCT-CTTATTTTGACACATTA--  407
         ||              |||  |||| | ||   |  ||  ||  |  
seq2  GAGTCTGAGGCAGCCTGGACCATGTAAGATGCTGTCTCAGAAGCAAAACA  426

seq1  --GAAACAACACATGCAAA  424
         ||||||||||||||||
seq2  ACAAAACAACACATGCAAA  445