BAC Information

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BAC

Clone NameB6Ng01-150I20
Chromosome12 (Build37)
Map Location 31,445,540 - 31,607,167
singlet/doubletdoublet
Overlap geneLOC100043055, Acp1, Sh3yl1
Upstream geneMyt1l, Pxdn, Tpo, Sntg2, Tmem18
Downstream geneLOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150I20.bB6Ng01-150I20.g
ACCDH946603DH946604
length1,1771,073
definitionDH946603|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I20, 5' end.DH946604|Mus musculus domesticus DNA, BAC clone: B6Ng01-150I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,605,973 - 31,607,167)(31,445,540 - 31,446,625)
sequence
gaattctcttaatattttggcagccttctttgcttctgatttcagattag
aaggtatcgggttattcactgaaagagtaaaaaacatactgtagtggggg
aaaagaatctagtttcagaatatatttcagcttcacttttctctcacaca
attacgcatttaaagtcaaactccaccaaagggaatggcttctggttctc
actgatatctcaggtctgtgtcctcaagctgtgaaatcttgcagatagct
aacactaaacactaaaactctcacgaattatgaaaacatgggatcatgga
gtcctaggcaaaagctggctggctttctctcctcgttaagtatcttctcc
ccataattatttcagtgtcaataaaaattttgattttgaggattaacaaa
agatatactttataattgcttttagtagacataatatttgatacagctgg
cttttctcatcagaaattttggaaatgtctggctgtcacaattaaaactc
tgggatgctcagaaactaagttaataggcccagtaatatatgctagctct
tacataacagtttacattcccagcataaacatgtttccttgttataatag
aatacatgcaactcttgaactccgaagcatgctggagaaggggggccact
ctcttgtcttgggatacacaaacataaggccaggtgagttcagcagctgt
ggtcctcatctgattgtctgtggtcaagtgttttagatggaaaatgctga
tgacatccatgccaccacttcgcctggtaacatgacatcgggaatgacca
agtagtatgggggaaaggtttaatttatcaaagtctagagctatctaaga
gcacagtacagattcatattggcagctggtaagcttgaatatgtaatttg
ttttagaagcagaaactgaaacagagtcatggcagagtcttgtttgtttt
ccttagaagataacagtttggttctttgtagcccaacacagatcattagt
aagaataaagttatgggaaagtcttttcatggcattttggggaaaggtgc
atttcagtttgcaaagcaaatgaatgtatattgttgtgttatgcattctt
ttgacagtatcctcacagatgtagtatgtgcattttaactcatttactac
aggattattaatatctgttctcaaatt
gaattcaagtatcagcccctttgtttgctgcagacatctataactgggta
acttctcagcctccccagactcccagtcccttgtttcttcctcatgatgg
actaggaatgctagatcccttttcctgtaactaggtgtagatttgtgata
tatgagcataaacctaccgaagaatttccatggagtttgctttctttaca
aatggagctaaagtagaaggcaggaaggttggcagcaggctgtgccttct
ttacatctactgtctggagttttggaagtgcagagcagcatctttatcac
caaacatagtcatatttcatcaatggattgagaaaaattatccttttagc
tcttggtatgttgggcaaactcatggaatttactggaattgagtaacttc
tctctttctttctcttgttacctttaattgttttaattttaaatgcaggt
ctttcattttatcctgcagagggcccagcacactgcccagcactctgctg
tcgtgatacagatcaaacaatgctggtagatttgctctgttgtctgagta
tttctaagttgttcgtagtggctgaaccagtttctacaggagatgagaac
accccgggttagaggatgaactcagcttcctgacgggactagctagaatt
gccttgatactttaatcttggtttaaatgttgattatgcacttaggagta
atgttatactcatcttcaaccaaagaactcagttattatcataatttata
atggtatgactcactgaagagcctaacgtgttgctgacttagagaactga
gaaatggaaaggagacaaattgtcaaaaacaagcaaagtttgagaaacgc
acagtcaaaaaagatctgatgatgtaagttcctgtgagtcctggatgggg
ctaaaagaatgctgagtagaaattaagagggtctgattaaactgttactg
aattagacattattactggtacttatcaagtttattgtgccattgtgcca
ccaacatggatgtaaatgatgggcctctgtaaccgcagctggagtgggga
agatgtttcatttattgatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_31605973_31607167
seq2: B6Ng01-150I20.b_44_1220 (reverse)

seq1  AATTTGAGAACCAGTATTTAAATAAT-CTGTAGTAAAATTGAGTTAAAAA  49
      |||||||||||   ||||  |||||| ||||||||||  |||||| ||||
seq2  AATTTGAGAACAGATATT--AATAATCCTGTAGTAAA--TGAGTT-AAAA  45

seq1  TGCACATTACCATACATACTGTGAGGATACTGGTTTAAAAAGAATGCCAT  99
      |||||| |||  ||||| ||||||||||||||   | ||||||||||   
seq2  TGCACA-TAC--TACAT-CTGTGAGGATACTG---TCAAAAGAATGCATA  88

seq1  ACACAAC-ATATACACTTCATTTTGCTTTTGCAAACTGGAAATGCACCCT  148
      ||||||| ||||||| |||| ||||| |||||||||| ||||||||||  
seq2  ACACAACAATATACA-TTCA-TTTGC-TTTGCAAACT-GAAATGCACC--  132

seq1  TTCCCCCAAAATGCCATTGATAGACTTTCCCATAACTTTATTCTTACTAA  198
      || ||||||||||||||  | |||||||||||||||||||||||||||||
seq2  TTTCCCCAAAATGCCATGAAAAGACTTTCCCATAACTTTATTCTTACTAA  182

seq1  TGATCTTGTGTTGGGCTACAAAGAACCAAACTGTTATCTTCTAAGGAAAA  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATC-TGTGTTGGGCTACAAAGAACCAAACTGTTATCTTCTAAGGAAAA  231

seq1  CAAACAAGACTCTGCCATGACTCTGTTTCAGTTTCTGCTTCTAAAACAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGACTCTGCCATGACTCTGTTTCAGTTTCTGCTTCTAAAACAAA  281

seq1  TTACATATTTCAAGCTTACCAGCTGCCAATATGAATCTGTACTGTGCTCT  348
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATA-TTCAAGCTTACCAGCTGCCAATATGAATCTGTACTGTGCTCT  330

seq1  TAGATAGCTCTAGACTTTGATAAATTAAACCTTTCCCCCATACTACTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCTCTAGACTTTGATAAATTAAACCTTTCCCCCATACTACTTGG  380

seq1  TCATTCCCGATGTCATGTTACCAGGCGAAGTGGTGGCATGGATGTCATCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCGATGTCATGTTACCAGGCGAAGTGGTGGCATGGATGTCATCA  430

seq1  GCATTTTCCATCTAAAACACTTGACCACAGACAATCAGATGAGGACCACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCCATCTAAAACACTTGACCACAGACAATCAGATGAGGACCACA  480

seq1  GCTGCTGAACTCACCTGGCCTTATGTTTGTGTATCCCAAGACAAGAGAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAACTCACCTGGCCTTATGTTTGTGTATCCCAAGACAAGAGAGT  530

seq1  GGCCCCCCTTCTCCAGCATGCTTCGGAGTTCAAGAGTTGCATGTATTCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCCTTCTCCAGCATGCTTCGGAGTTCAAGAGTTGCATGTATTCTA  580

seq1  TTATAACAAGGAAACATGTTTATGCTGGGAATGTAAACTGTTATGTAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACAAGGAAACATGTTTATGCTGGGAATGTAAACTGTTATGTAAGA  630

seq1  GCTAGCATATATTACTGGGCCTATTAACTTAGTTTCTGAGCATCCCAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATATATTACTGGGCCTATTAACTTAGTTTCTGAGCATCCCAGAG  680

seq1  TTTTAATTGTGACAGCCAGACATTTCCAAAATTTCTGATGAGAAAAGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGTGACAGCCAGACATTTCCAAAATTTCTGATGAGAAAAGCCA  730

seq1  GCTGTATCAAATATTATGTCTACTAAAAGCAATTATAAAGTATATCTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATCAAATATTATGTCTACTAAAAGCAATTATAAAGTATATCTTTT  780

seq1  GTTAATCCTCAAAATCAAAATTTTTATTGACACTGAAATAATTATGGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCCTCAAAATCAAAATTTTTATTGACACTGAAATAATTATGGGGA  830

seq1  GAAGATACTTAACGAGGAGAGAAAGCCAGCCAGCTTTTGCCTAGGACTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACTTAACGAGGAGAGAAAGCCAGCCAGCTTTTGCCTAGGACTCC  880

seq1  ATGATCCCATGTTTTCATAATTCGTGAGAGTTTTAGTGTTTAGTGTTAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCCATGTTTTCATAATTCGTGAGAGTTTTAGTGTTTAGTGTTAGC  930

seq1  TATCTGCAAGATTTCACAGCTTGAGGACACAGACCTGAGATATCAGTGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAAGATTTCACAGCTTGAGGACACAGACCTGAGATATCAGTGAG  980

seq1  AACCAGAAGCCATTCCCTTTGGTGGAGTTTGACTTTAAATGCGTAATTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAGCCATTCCCTTTGGTGGAGTTTGACTTTAAATGCGTAATTGT  1030

seq1  GTGAGAGAAAAGTGAAGCTGAAATATATTCTGAAACTAGATTCTTTTCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAAAGTGAAGCTGAAATATATTCTGAAACTAGATTCTTTTCCC  1080

seq1  CCACTACAGTATGTTTTTTACTCTTTCAGTGAATAACCCGATACCTTCTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACAGTATGTTTTTTACTCTTTCAGTGAATAACCCGATACCTTCTA  1130

seq1  ATCTGAAATCAGAAGCAAAGAAGGCTGCCAAAATATTAAGAGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAATCAGAAGCAAAGAAGGCTGCCAAAATATTAAGAGAATTC  1177

seq1: chr12_31445540_31446625
seq2: B6Ng01-150I20.g_65_1137

seq1  GAATTCAAGTATCAGCCCCTTTGTTTGCTGCAGACATCTATAACTGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTATCAGCCCCTTTGTTTGCTGCAGACATCTATAACTGGGTA  50

seq1  ACTTCTCAGCCTCCCCAGACTCCCAGTCCCTTGTTTCTTCCTCATGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCAGCCTCCCCAGACTCCCAGTCCCTTGTTTCTTCCTCATGATGG  100

seq1  ACTAGGAATGCTAGATCCCTTTTCCTGTAACTAGGTGTAGATTTGTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAATGCTAGATCCCTTTTCCTGTAACTAGGTGTAGATTTGTGATA  150

seq1  TATGAGCATAAACCTACCGAAGAATTTCCATGGAGTTTGCTTTCTTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCATAAACCTACCGAAGAATTTCCATGGAGTTTGCTTTCTTTACA  200

seq1  AATGGAGCTAAAGTAGAAGGCAGGAAGGTTGGCAGCAGGCTGTGCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCTAAAGTAGAAGGCAGGAAGGTTGGCAGCAGGCTGTGCCTTCT  250

seq1  TTACATCTACTGTCTGGAGTTTTGGAAGTGCAGAGCAGCATCTTTATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTACTGTCTGGAGTTTTGGAAGTGCAGAGCAGCATCTTTATCAC  300

seq1  CAAACATAGTCATATTTCATCAATGGATTGAGAAAAATTATCCTTTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAGTCATATTTCATCAATGGATTGAGAAAAATTATCCTTTTAGC  350

seq1  TCTTGGTATGTTGGGCAAACTCATGGAATTTACTGGAATTGAGTAACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTATGTTGGGCAAACTCATGGAATTTACTGGAATTGAGTAACTTC  400

seq1  TCTCTTTCTTTCTCTTGTTACCTTTAATTGTTTTAATTTTAAATGCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTTCTCTTGTTACCTTTAATTGTTTTAATTTTAAATGCAGGT  450

seq1  CTTTCATTTTATCCTGCAGAGGGCCCAGCACACTGCCCAGCACTCTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTTATCCTGCAGAGGGCCCAGCACACTGCCCAGCACTCTGCTG  500

seq1  TCGTGATACAGATCAAACAATGCTGGTAGATTTGCTCTGTTGTCTGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATACAGATCAAACAATGCTGGTAGATTTGCTCTGTTGTCTGAGTA  550

seq1  TTTCTAAGTTGTTCGTAGTGGCTGAACCAGTTTCTACAGGAGATGAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGTTGTTCGTAGTGGCTGAACCAGTTTCTACAGGAGATGAGAAC  600

seq1  ACCCCGGGTTAGAGGATGAACTCAGCTTCCTGACGGGACTAGCTAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGGGTTAGAGGATGAACTCAGCTTCCTGACGGGACTAGCTAGAATT  650

seq1  GCCTTGATACTTTAATCTTGGTTTAAATGTTGATTATGCACTTAGGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATACTTTAATCTTGGTTTAAATGTTGATTATGCACTTAGGAGTA  700

seq1  ATGTTATACTCATCTTCAACCAAAGAACTCAGTTATTATCATAATTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATACTCATCTTCAACCAAAGAACTCAGTTATTATCATAATTTATA  750

seq1  ATGGTATGACTCACTGAAGAGCCTAACGTGTTGCTGACTTAGAGAACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATGACTCACTGAAGAGCCTAACGTGTTGCTGACTTAGAGAACTGA  800

seq1  GAAATGGAAAGGAGACAAATTGTCAAAAACAAGCAAAGTTTGAGAAACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAAAGGAGACAAATTGTCAAAAACAAGCAAAGTTTGAGAAACGC  850

seq1  ACAGTCAAAAAAAGATCTGATGATGTAAGTTCCTGTGAGGTCCTGGATGG  900
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAGTC-AAAAAAGATCTGATGATGTAAGTTCCTGTGA-GTCCTGGATGG  898

seq1  GGCTAAAAAGAATGCTGAGTAAGAAATTAAGAGGGTCTGAATTAAACTGT  950
      |||| ||||||||||||||| |||||||||||||||||| ||||||||||
seq2  GGCT-AAAAGAATGCTGAGT-AGAAATTAAGAGGGTCTG-ATTAAACTGT  945

seq1  TAACTGAATTAGACATTAATTACTGGTAACTTATCAAGTTTTATTGTGCC  1000
      | ||||||||||||||| ||||||||| |||||||||| |||||||||||
seq2  T-ACTGAATTAGACATT-ATTACTGGT-ACTTATCAAG-TTTATTGTGCC  991

seq1  ATTGTGCCACCAACATTGGATGTAAATGATGGGGCCTCTGTAAACAGCAG  1050
      ||||||||||||||| |||||||||||||| |||||||||| ||| ||||
seq2  ATTGTGCCACCAACA-TGGATGTAAATGAT-GGGCCTCTGT-AACCGCAG  1038

seq1  CTGGAGT-GGGAAGATGTTTCATTTTATGTGATGTAT  1086
      ||||||| |||||||||||||| ||||| ||||||||
seq2  CTGGAGTGGGGAAGATGTTTCA-TTTAT-TGATGTAT  1073