BAC Information

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BAC

Clone NameB6Ng01-150J21
Chromosome12 (Build37)
Map Location 92,309,944 - 92,486,467
singlet/doubletdoublet
Overlap gene4930534B04Rik
Upstream geneNrxn3, LOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik, 5430427M07Rik
Downstream geneTshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150J21.bB6Ng01-150J21.g
ACCDH946651DH946652
length1,2021,093
definitionDH946651|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J21, 5' end.DH946652|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,309,944 - 92,311,167)(92,485,363 - 92,486,467)
sequence
gaattcttacatttagagaaaatacatcattcagtgtttttaaatggttc
cccaggtaagtccttattgcacttaaaaccacaaagtctagagaaatcag
tacttgaaacattgtcccctccaggatggtaaggaacaccgggatttaac
gtaatgtgcacaagttggcttgatttcacaaaactgcactgaaagaaacg
attgtcagttcccaggtctacgaaaagagggaatatgcagaacgatggct
ttttagtggccacccctgggcagtctcagctaccaggagtgttgctcaga
ctctcgtttactataggtaatggaacatccaggatgctcagctcagtgat
tttagattagggaggtctcgtcatatgacattagacttttcttctctgcc
aattctaccaacagaaattttatcttatatagaagtgacagacttattcc
caacatccctgtgccagttcatctctcaaaatacattttcccattagatt
cccatgaagctagtccaggagtcgggagagtagccagatccagccagtta
cctgttttcacaggaccatgaactgcagcagtcattatatttttatttgg
ttgaaataaaccaaaggagagtgaagttgtatgaaatcaaaatgtcaggg
tccttaaaccaagctttactgaaacctaacctgggagttgcttaagcctt
gtctatggtgttttccacgatacagtgcatagctcgagcatgagacaggc
ccaactgcaggtagttagaatctggacctttcgacaagcagagtggctac
tggaagatgttgatgtctattaagaattactttctacttgacagagaaca
tattaagaattactttctacttgacagagaacattgtgtgtttctggaga
ggatatgatgatatgtatacgcacacgcacacacacacacacacacacac
acacatccggtggcaggagagagagacagagatagaagaggagaagaaga
agagtgccattttattttacatctttactactctcttgcaagtgggcatg
catagagcaatgctagaatacagactattttctcaggacattgtttaatt
tctctttagccagtaatttttcatttcttccaagggcctatatccttcct
ttcccactcctccattcgcaagatgactatcaaggagaacttattgggat
ag
gaattcatagccactatggctcaagatctccaaaccaatatccagataag
gatctctaagtctccagataagggtcactggtgagccttccaattctgga
ttgtagttcattccaaatatagtcaagttgacaaccaggaatagccacta
cagggaggaaagcaaacatattaggcactttccactaaaatcctgttcac
ttagtcttggttttttgttgtttgtttgtttgtttttttcttcctgcatt
tgcctttgatccccataataaattttaggccaagtaatcctgtgtatgac
atgctatggtatacaaaccaggaccatatgaagatttcacattacaccca
tttcagtgattgcttggacgttaattaggcccttctggccctggttgacc
ctataagggaacataaaaccggtgcctatgtttgtttttattaaattttt
ctgtcattgctctgtagagtactcattgattcaagttattttctcattag
atgatgaccgagcagtgttgtgtagattttagttataaccaacaggaggt
atttttgttgtacccattagctatcatcaaaagatgattcaagtccccct
ctcccttttgtctttcatgaggagccatgctttaagggaaagggagagca
agagagtctgtggtttgtgagagataactaagtgttcaaatattgctctt
tgagacaccgtgtatttttttctgaaaattaagcaacacacactctgagt
gcattatttaaaactccatttgtttgttttcctggccatattttgtttca
gaagtcgaaatgcatcagaagtagatgacttttaaatatcaaatgttatt
tctctttctagacatttagcttgagagaaatacgtaaaatcacagaataa
tcctcacagcaaatgcaaaaagtaccccctagaagtattctcttttctca
ctgtgaatattaattttaggatatgccatgcatactgcacactctttgat
gtgctggtatgatctctgtattatgcagtgctgtctagagaagggttcga
aaggcagagcaggctaactttctatggtggggggtggaaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_92309944_92311167
seq2: B6Ng01-150J21.b_46_1247

seq1  GAATTCTTACATTTAGAGAAAATACATCATTCAGTGTTTTTAAATGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACATTTAGAGAAAATACATCATTCAGTGTTTTTAAATGGTTC  50

seq1  CCCAGGTAAGTCCTTATTGCACTTAAAACCACAAAGTCTAGAGAAATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTAAGTCCTTATTGCACTTAAAACCACAAAGTCTAGAGAAATCAG  100

seq1  TACTTGAAACATTGTCCCCTCCAGGATGGTAAGGAACACCGGGATTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAACATTGTCCCCTCCAGGATGGTAAGGAACACCGGGATTTAAC  150

seq1  GTAATGTGCACAAGTTGGCTTGATTTCACAAAACTGCACTGAAAGAAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTGCACAAGTTGGCTTGATTTCACAAAACTGCACTGAAAGAAACG  200

seq1  ATTGTCAGTTCCCAGGTCTACGAAAAGAGGGAATATGCAGAACGATGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGTTCCCAGGTCTACGAAAAGAGGGAATATGCAGAACGATGGCT  250

seq1  TTTTAGTGGCCACCCCTGGGCAGTCTCAGCTACCAGGAGTGTTGCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGGCCACCCCTGGGCAGTCTCAGCTACCAGGAGTGTTGCTCAGA  300

seq1  CTCTCGTTTACTATAGGTAATGGAACATCCAGGATGCTCAGCTCAGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTTTACTATAGGTAATGGAACATCCAGGATGCTCAGCTCAGTGAT  350

seq1  TTTAGATTAGGGAGGTCTCGTCATATGACATTAGACTTTTCTTCTCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTAGGGAGGTCTCGTCATATGACATTAGACTTTTCTTCTCTGCC  400

seq1  AATTCTACCAACAGAAATTTTATCTTATATAGAAGTGACAGACTTATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACCAACAGAAATTTTATCTTATATAGAAGTGACAGACTTATTCC  450

seq1  CAACATCCCTGTGCCAGTTCATCTCTCAAAATACATTTTCCCATTAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCCTGTGCCAGTTCATCTCTCAAAATACATTTTCCCATTAGATT  500

seq1  CCCATGAAGCTAGTCCAGGAGTCGGGAGAGTAGCCAGATCCAGCCAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAAGCTAGTCCAGGAGTCGGGAGAGTAGCCAGATCCAGCCAGTTA  550

seq1  CCTGTTTTCACAGGACCATGAACTGCAGCAGTCATTATATTTTTATTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCACAGGACCATGAACTGCAGCAGTCATTATATTTTTATTTGG  600

seq1  TTGAAATAAACCAAAGGAGAGTGAAGTTGTATGAAATCAAAATGTCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAACCAAAGGAGAGTGAAGTTGTATGAAATCAAAATGTCAGGG  650

seq1  TCCTTAAACCAAGCTTTACTGAAACCTAACCTGGGAGTTGCTTAAGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAACCAAGCTTTACTGAAACCTAACCTGGGAGTTGCTTAAGCCTT  700

seq1  GTCTATGGTGTTTTCCACGATACAGTGCATAGCTCGAGCATGAGACAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGGTGTTTTCCACGATACAGTGCATAGCTCGAGCATGAGACAGGC  750

seq1  CCAACTGCAGGTAGTTAGAATCTGGACCTTTCGACAAGCAGAGTGGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCAGGTAGTTAGAATCTGGACCTTTCGACAAGCAGAGTGGCTAC  800

seq1  TGGAAGATGTTGATGTCTATTAAGAATTACTTTCTACTTGACAGAGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATGTTGATGTCTATTAAGAATTACTTTCTACTTGACAGAGAACA  850

seq1  TATTAAGAATTACTTTCTACTTGACAGAGAACATTGTGTGTTTCTGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAATTACTTTCTACTTGACAGAGAACATTGTGTGTTTCTGGAGA  900

seq1  GGATATGATGATATGTATACGCACACGCACACACACACACACACACACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGATGATATGTATACGCACACGCACACACACACACACACACACAC  950

seq1  ACACATCCGGTGGCAGGGAGAGGAGAGAACAGAGATAGAAGAGGAGAAGA  1000
      ||||||||||||||| ||||| ||||| ||||||||||||||||||||||
seq2  ACACATCCGGTGGCA-GGAGA-GAGAG-ACAGAGATAGAAGAGGAGAAGA  997

seq1  GAAAGAGTGCCATTTTATTTTACATCTTTACTACTCTCTTTGCAAGTTGG  1050
        |||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  AGAAGAGTGCCATTTTATTTTACATCTTTACTACTCTC-TTGCAAG-TGG  1045

seq1  GCATGCATAGAGCAATGCTCAGACTACAGACTA-TTTCTCAGGACATTGT  1099
      ||||||||||||||||||| ||| ||||||||| ||||||||||||||||
seq2  GCATGCATAGAGCAATGCT-AGAATACAGACTATTTTCTCAGGACATTGT  1094

seq1  TTA--TTCCTTTTAGCAAGTTTTATTTTTTCATTTTCTTCCAATGTCTTA  1147
      |||  |||  |||||| ||   || ||||||| |||||||||| | | ||
seq2  TTAATTTCTCTTTAGCCAG---TAATTTTTCA-TTTCTTCCAAGGGCCTA  1140

seq1  TTTCCTTTCTTTCCCACTCCTTCATTTCCACTAATGTATGTACTTAATTC  1197
      | ||||| ||||||||||||| ||||  ||       ||| |||  ||  
seq2  TATCCTTCCTTTCCCACTCCTCCATTCGCA-----AGATG-ACT--AT--  1180

seq1  ACAATGTGAAGACATTTATTGGGATAG  1224
       ||| | ||    | ||||||||||||
seq2  -CAAGGAGA----ACTTATTGGGATAG  1202

seq1: chr12_92485363_92486467
seq2: B6Ng01-150J21.g_68_1160 (reverse)

seq1  AACTTTCAACCCCC--ACATAAGGAAAGTTATGCTTGGCTCTGGCCTTTC  48
      ||||||| ||||||   ||||  ||||||||  ||  ||||| |||||||
seq2  AACTTTCCACCCCCCACCATA--GAAAGTTAGCCT--GCTCT-GCCTTTC  45

seq1  GGACCCCTCTCCTAAGACAGCACTGCATAATACAGAGATCATTACCAGCA  98
      | |||| ||||   ||||||||||||||||||||||||||| ||||||||
seq2  GAACCCTTCTC--TAGACAGCACTGCATAATACAGAGATCA-TACCAGCA  92

seq1  CAATCAAAGAGTGTGCAGTATGCATTGGCATATTCCTAAAAATTAATATT  148
      | |||||||||||||||||||||| ||||||| |||| ||||||||||||
seq2  C-ATCAAAGAGTGTGCAGTATGCA-TGGCATA-TCCT-AAAATTAATATT  138

seq1  CACAGTGAGAAAAGAGAATACCTTCTAGGGGGTACTTTTTGCATTTGCTG  198
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACAGTGAGAAAAGAGAATA-CTTCTAGGGGGTACTTTTTGCATTTGCTG  187

seq1  TGAGGATTATTCTGTGATTTTTACGTATTTCTCTCAAGCTAAATGTCTAG  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAGGATTATTCTGTGA-TTTTACGTATTTCTCTCAAGCTAAATGTCTAG  236

seq1  AAAGAGAAATAACATTTGATATTTAAAAGTCATCTACTTCTGATGCATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAATAACATTTGATATTTAAAAGTCATCTACTTCTGATGCATTT  286

seq1  CGACTTCTGAAACAAAATATGGCCAGGAAAACAAACAAATGGAGTTTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTCTGAAACAAAATATGGCCAGGAAAACAAACAAATGGAGTTTTAA  336

seq1  ATAATGCACTCAGAGTGTGTGTTGCTTAATTTTCAGAAAAAAATACACGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCACTCAGAGTGTGTGTTGCTTAATTTTCAGAAAAAAATACACGG  386

seq1  TGTCTCAAAGAGCAATATTTGAACACTTAGTTATCTCTCACAAACCACAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAGAGCAATATTTGAACACTTAGTTATCTCTCACAAACCACAG  436

seq1  ACTCTCTTGCTCTCCCTTTCCCTTAAAGCATGGCTCCTCATGAAAGACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTTGCTCTCCCTTTCCCTTAAAGCATGGCTCCTCATGAAAGACAA  486

seq1  AAGGGAGAGGGGGACTTGAATCATCTTTTGATGATAGCTAATGGGTACAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAGGGGGACTTGAATCATCTTTTGATGATAGCTAATGGGTACAA  536

seq1  CAAAAATACCTCCTGTTGGTTATAACTAAAATCTACACAACACTGCTCGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACCTCCTGTTGGTTATAACTAAAATCTACACAACACTGCTCGG  586

seq1  TCATCATCTAATGAGAAAATAACTTGAATCAATGAGTACTCTACAGAGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCTAATGAGAAAATAACTTGAATCAATGAGTACTCTACAGAGCA  636

seq1  ATGACAGAAAAATTTAATAAAAACAAACATAGGCACCGGTTTTATGTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGAAAAATTTAATAAAAACAAACATAGGCACCGGTTTTATGTTCC  686

seq1  CTTATAGGGTCAACCAGGGCCAGAAGGGCCTAATTAACGTCCAAGCAATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGGGTCAACCAGGGCCAGAAGGGCCTAATTAACGTCCAAGCAATC  736

seq1  ACTGAAATGGGTGTAATGTGAAATCTTCATATGGTCCTGGTTTGTATACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGGGTGTAATGTGAAATCTTCATATGGTCCTGGTTTGTATACC  786

seq1  ATAGCATGTCATACACAGGATTACTTGGCCTAAAATTTATTATGGGGATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATGTCATACACAGGATTACTTGGCCTAAAATTTATTATGGGGATC  836

seq1  AAAGGCAAATGCAGGAAGAAAAAAACAAACAAACAAACAACAAAAAACCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAATGCAGGAAGAAAAAAACAAACAAACAAACAACAAAAAACCA  886

seq1  AGACTAAGTGAACAGGATTTTAGTGGAAAGTGCCTAATATGTTTGCTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGTGAACAGGATTTTAGTGGAAAGTGCCTAATATGTTTGCTTTC  936

seq1  CTCCCTGTAGTGGCTATTCCTGGTTGTCAACTTGACTATATTTGGAATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTAGTGGCTATTCCTGGTTGTCAACTTGACTATATTTGGAATGA  986

seq1  ACTACAATCCAGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATCCAGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGACTT  1036

seq1  AGAGATCCTTATCTGGATATTGGTTTGGAGATCTTGAGCCATAGTGGCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCTTATCTGGATATTGGTTTGGAGATCTTGAGCCATAGTGGCTA  1086

seq1  TGAATTC  1105
      |||||||
seq2  TGAATTC  1093