BAC Information

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BAC

Clone NameB6Ng01-150O18
Chromosome12 (Build37)
Map Location 54,918,470 - 55,063,661
singlet/doubletdoublet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150O18.bB6Ng01-150O18.g
ACCDH946874DH946875
length3821,039
definitionDH946874|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O18, 5' end.DH946875|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,918,470 - 54,918,864)(55,062,611 - 55,063,661)
sequence
ggcctatgtgagtctgaaaggcacagtttctttttaattaccattaaatt
aaattaccattaatcactgcctcttgaaaaatgtggagcattctcatttc
aaacttgggtatggaccttattcaacctttcaccccacaggttcaccctc
tttcccagagggtctgagcaggcatctctctgtcatctcagatctagaac
tcctcctgaatctgactgaaaacattttgtcaatgtagctcctcccatgt
tgaggacaaaggggtgacattgagggagatcacagatctgtgagccacaa
actccaatacatgacaaattgtccctgtattgggaacttgtgagggcagg
aagcaatttcctggttattttttttgtgttcc
gaattctgcaggtgggtgggatcatataaatgaagtcttcagatgtgagt
tagatttccaacactttccacatgggcacacagaatctcggttctaaagc
agtcctgggggtgtatgtctagctgtagctctctctcagcctctaagccc
agacccaaacagagggtctgaaactaaggggggggggttgccatcacaac
tgaattttttctatgtaaagtgcaagatttcttcaaacagaatcatcccc
cggaagggataagaatgttaacaggggagcgtcaaccattaagcaaaatc
aaaatctaaacattatcatcaaaagcagctttcccggtcctaagcaatga
atggcagcttgaagatgaatgtcacctctcctccccaagtaaatctcatt
aatttaagcagatgtgcacgtgggaagggagggaggcgtacatattttgc
ttccaccctttgtacccctgtcacaagctggccttgccgtctctctcacc
accgcacaatgcaccagacaagctctgggccctggaaggaattcacctgg
ctctctcttccgttaattctgacctcagggttgagcatctccacatgggg
agcacctcttagggagcacctccttgtgcttgtctttctttttctaatca
agatattaggatatttatatttaaaaaaaaaatcacccccccccccaaac
tgaagtctcaaattaagatcccaaaatactgtcagccacctgggactctc
cttatggtcctgtcccttagggactcaggagtcacccaactctcccgaat
ccctgtaccctcagaagaccagggcaggcagcactggcttcgcccaacca
tattaatctcttctgtaagcttttgtggtctctacaaaggcttttaagtt
ctcctttctttcttaatcgaccatcagtaaatcccactttcagagtgccc
tttgcacagttgcataaaacgatacccacagttattatgcaccatctatc
agtgggagtgatataaagttgcacgcagggggaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_54918470_54918864
seq2: B6Ng01-150O18.b_48_442

seq1  GAATTCCAGCTCAGGCCTATGTGAGTCTGAAGGTCACAGTTTCTTTTTAA  50
      ||||||||||||||||||||||||||||||| | ||||||||||||||||
seq2  GAATTCCAGCTCAGGCCTATGTGAGTCTGAAAGGCACAGTTTCTTTTTAA  50

seq1  TTACCATTAAATTAAATTACCATTAATCACTGCCTCTTGAAAAATGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTAAATTAAATTACCATTAATCACTGCCTCTTGAAAAATGTGGA  100

seq1  GCATTCTCATTTCAAACTTGGGTATGGACCTTATTCAACCTTTCACCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCATTTCAAACTTGGGTATGGACCTTATTCAACCTTTCACCCCA  150

seq1  CAGGTTCACCCTCTTTCCCAGAGGGTCTGAGCAGGCATCTCTCTGTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCACCCTCTTTCCCAGAGGGTCTGAGCAGGCATCTCTCTGTCATC  200

seq1  TCAGATCTAGAACTCCTCCTGAATCTGACTGAAAACATTTTGTCAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTAGAACTCCTCCTGAATCTGACTGAAAACATTTTGTCAATGTA  250

seq1  GCTCCTCCCATGTTGAGGACAAAGGGGTGACATTGAGGGAGATCACAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCCATGTTGAGGACAAAGGGGTGACATTGAGGGAGATCACAGAT  300

seq1  CTGTGAGCCACAAACTCCAATACATGACAAATTGTCCCTGTATTGGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCCACAAACTCCAATACATGACAAATTGTCCCTGTATTGGGAAC  350

seq1  TTGTGAGGGCAGGAAGCAAGTCCCTGGTGAACTACAGTGTGTTCC  395
      ||||||||||||||||||| | |||||| |  |    ||||||||
seq2  TTGTGAGGGCAGGAAGCAATTTCCTGGTTATTTTTTTTGTGTTCC  395

seq1: chr12_55062611_55063661
seq2: B6Ng01-150O18.g_68_1106 (reverse)

seq1  TTTTTTTCCCCCTGCGTGCAACTTTATATCACTCCCCAACTGATAGAATG  50
      ||||||||||||||||||||||||||||||||||||  |||||||| |||
seq2  TTTTTTTCCCCCTGCGTGCAACTTTATATCACTCCC--ACTGATAG-ATG  47

seq1  GTGCATAATTAAACTGTGGGGTTATTCGTTTTATGCAAACTGGTGCAAAG  100
      |||||||||  |||||||||  || ||||||||||| |||| ||||||||
seq2  GTGCATAAT--AACTGTGGG--TA-TCGTTTTATGC-AACT-GTGCAAAG  90

seq1  GGCACTCTGAAAGTGGGATTTTACTGATGGTCGATTAAGAAAGAAAGGAG  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGCACTCTGAAAGTGGGA-TTTACTGATGGTCGATTAAGAAAGAAAGGAG  139

seq1  AAACTTAAAAGCCTTTTGTAGAGAACCACAAAAGCTTACAGAAGAGATTA  200
       |||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  -AACTTAAAAGCC-TTTGTAGAG-ACCACAAAAGCTTACAGAAGAGATTA  186

seq1  ATATGGTTGGGCGAAGCCAGTGCTGCCTGCCCTGGTCTTCTGAGGGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTGGGCGAAGCCAGTGCTGCCTGCCCTGGTCTTCTGAGGGTACA  236

seq1  GGGATTCGGGAGAGTTGGGTGACTCCTGAGTCCCTAAGGGACAGGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCGGGAGAGTTGGGTGACTCCTGAGTCCCTAAGGGACAGGACCAT  286

seq1  AAGGAGAGTCCCAGGTGGCTGACAGTATTTTGGGATCTTAATTTGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGTCCCAGGTGGCTGACAGTATTTTGGGATCTTAATTTGAGACT  336

seq1  TCAGTTT-GGGGGGGGGGTGA-TTTTTTTTTAAATATAAATATCCTAATA  398
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAGTTTGGGGGGGGGGGTGATTTTTTTTTTAAATATAAATATCCTAATA  386

seq1  TCTTGATTAGAAAAAGAAAGACAAGCACAAGGAGGTGCTCCCTAAGAGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTAGAAAAAGAAAGACAAGCACAAGGAGGTGCTCCCTAAGAGGT  436

seq1  GCTCCCCATGTGGAGATGCTCAACCCTGAGGTCAGAATTAACGGAAGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCATGTGGAGATGCTCAACCCTGAGGTCAGAATTAACGGAAGAGA  486

seq1  GAGCCAGGTGAATTCCTTCCAGGGCCCAGAGCTTGTCTGGTGCATTGTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGTGAATTCCTTCCAGGGCCCAGAGCTTGTCTGGTGCATTGTGC  536

seq1  GGTGGTGAGAGAGACGGCAAGGCCAGCTTGTGACAGGGGTACAAAGGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGAGAGAGACGGCAAGGCCAGCTTGTGACAGGGGTACAAAGGGTG  586

seq1  GAAGCAAAATATGTACGCCTCCCTCCCTTCCCACGTGCACATCTGCTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAATATGTACGCCTCCCTCCCTTCCCACGTGCACATCTGCTTAA  636

seq1  ATTAATGAGATTTACTTGGGGAGGAGAGGTGACATTCATCTTCAAGCTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGAGATTTACTTGGGGAGGAGAGGTGACATTCATCTTCAAGCTGC  686

seq1  CATTCATTGCTTAGGACCGGGAAAGCTGCTTTTGATGATAATGTTTAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTGCTTAGGACCGGGAAAGCTGCTTTTGATGATAATGTTTAGAT  736

seq1  TTTGATTTTGCTTAATGGTTGACGCTCCCCTGTTAACATTCTTATCCCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTGCTTAATGGTTGACGCTCCCCTGTTAACATTCTTATCCCTT  786

seq1  CCGGGGGATGATTCTGTTTGAAGAAATCTTGCACTTTACATAGAAAAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGGATGATTCTGTTTGAAGAAATCTTGCACTTTACATAGAAAAAAT  836

seq1  TCAGTTGTGATGGCAACCCCCCCCCCTTAGTTTCAGACCCTCTGTTTGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTGATGGCAACCCCCCCCCCTTAGTTTCAGACCCTCTGTTTGGG  886

seq1  TCTGGGCTTAGAGGCTGAGAGAGAGCTACAGCTAGACATACACCCCCAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTTAGAGGCTGAGAGAGAGCTACAGCTAGACATACACCCCCAGG  936

seq1  ACTGCTTTAGAACCGAGATTCTGTGTGCCCATGTGGAAAGTGTTGGAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTAGAACCGAGATTCTGTGTGCCCATGTGGAAAGTGTTGGAAAT  986

seq1  CTAACTCACATCTGAAGACTTCATTTATATGATCCCACCCACCTGCAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCACATCTGAAGACTTCATTTATATGATCCCACCCACCTGCAGAA  1036

seq1  TTC  1051
      |||
seq2  TTC  1039