BAC Information

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BAC

Clone NameB6Ng01-152D17
Chromosome12 (Build37)
Map Location 53,688,350 - 53,743,704
singlet/doubletdoublet
Overlap genenone
Upstream geneCoch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneAkap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152D17.bB6Ng01-152D17.g
ACCDH947855DH947856
length1,0711,178
definitionDH947855|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D17, 5' end.DH947856|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,688,350 - 53,689,418)(53,742,522 - 53,743,704)
sequence
gaattcatttgaccaccatcaagaaaaagggacagagacaggaacttaat
tttttttatataggacgatgactttttgagctgagcttactacatctata
agtgatcttatcttatccacccacatgatgggatctttgtttctctgact
tcaagtcccacgttcttgccccatctcttccacttttgttatttgacatg
tcagttgtggagaggtagctagaactgtgagcccaaagctcataacataa
tgaattcctgctgcattgggcaagcagctggtgagcctgcaagctgatac
tcccccagtcctcaccaagctggaacatgtccaactccagagtcatgtct
gcaattctgagtttatggggttgcacaaataaaatgagcagtggaggtgc
tctcctaagactccaatataattccatgatgtgtacagccttccaccaga
caggggccaatagtcctctccctcacgcctattctcagctgggattttat
gttccaccagacccttacaggctcagtgtgaaacctgggcctgatcagga
agtaattcaaagttctgaggtaaagaaagagataccatctttggtgtggc
tgaaaatttttaatgaatttccagtttaccctatactagcattaatctgc
tacaattgctaatattttcctatgagattgttcctttcattttttacgtt
tttatgtttattggcaaagtgtttcaatgctttcatcatccttttaattg
tggctctgtgatactttacattctaaatattgttttttttttctttttgt
tttgtggaatactgaccagttttgttgattttttttttcttctctccctt
tgagttgaagttttcctatgtagctataccctgaacctttctgtgtcata
gtgctgggatttcaggatattcctgccatacctgcctgtctctcgcttac
agtggtgactttcctgctgggtcgggaggcaaatttagttccagctcctc
tgtagactgaggcagaaaacattgtttccgactcagttcaaggccagcct
tgacaccagtgagaatctgtc
gaattcttgagacattcagatgaagtcatggtgtggataaagcctatgag
atggtgcctgcctacacattgagaggtcatctacaaccttgcacatctaa
gaagaaggaacaatggaaaacttaaatgtgtctctctttccaactgtgag
atgtttaaagtgccttccttcaaggtgaatttttcacaaacacggtccag
aatatacatattctgtaaatccatcccttctagataattcataatcaaca
aaactagacagctactatgcttcaaaaacagaaccagtccaaaatatacc
ctctttgtaagataagctttatatccaaatataatttcactgatacaggc
ctgtggcccaaaagagaaggaatagtgttctaaacacacactaggaagtc
tggcagcatcccccaggcatcctttgcttgacactaggtacatttggtgt
tgatctgcttgcctgatttgttttggtttgtttccctgttatttgtttca
gacagtcttagcatgtggctggccttgaagtcaacgcagcctacctcagc
ttctccagtgaggtctgaaaaaaaggctgatattggttttaagggttttc
tgtggagtctgagtctcctggatgccaaaagaggagagttcaagccaacc
tcacctgtcttttctgcgcctttaagtcatccaaaacctaatgacagcct
gacttgcgcagccaaaggttttagtgttgatttttttttgtaaagaaaag
tttagacttttcccaagacatcaaaagggggaagagatgatggtggaagt
agagcctagggggtgacctgaaaccacacactgggcaggcatgttcagcc
taggggatgacctgtggcacactgggcaggcatgttcattttgaggcttc
ctgcttgcctagctaggcagtggacaattattgagctcctattttctgca
cctttatatagaaagtctgctcactactgtgcaatgtgattccaagaaat
tttagaggagggcttgcagaaagcagatgtatctgagtttgaaaagccag
ttccttgggcccctcctggctcttttccggaaccttaagttgcccttgct
tctctatgctagcagtggaagcagaagtaagagactgaatcccgcttgat
ggacgtgaatcccacaccctgggaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53688350_53689418
seq2: B6Ng01-152D17.b_44_1114

seq1  GAATTCATTTGACCACCATCAAGAAAAAGGGACAGAGACAGGAACTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGACCACCATCAAGAAAAAGGGACAGAGACAGGAACTTAAT  50

seq1  TTTTTTTATATAGGACGATGACTTTTTGAGCTGAGCTTACTACATCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATATAGGACGATGACTTTTTGAGCTGAGCTTACTACATCTATA  100

seq1  AGTGATCTTATCTTATCCACCCACATGATGGGATCTTTGTTTCTCTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTTATCTTATCCACCCACATGATGGGATCTTTGTTTCTCTGACT  150

seq1  TCAAGTCCCACGTTCTTGCCCCATCTCTTCCACTTTTGTTATTTGACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCCACGTTCTTGCCCCATCTCTTCCACTTTTGTTATTTGACATG  200

seq1  TCAGTTGTGGAGAGGTAGCTAGAACTGTGAGCCCAAAGCTCATAACATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTGGAGAGGTAGCTAGAACTGTGAGCCCAAAGCTCATAACATAA  250

seq1  TGAATTCCTGCTGCATTGGGCAAGCAGCTGGTGAGCCTGCAAGCTGATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCTGCTGCATTGGGCAAGCAGCTGGTGAGCCTGCAAGCTGATAC  300

seq1  TCCCCCAGTCCTCACCAAGCTGGAACATGTCCAACTCCAGAGTCATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGTCCTCACCAAGCTGGAACATGTCCAACTCCAGAGTCATGTCT  350

seq1  GCAATTCTGAGTTTATGGGGTTGCACAAATAAAATGAGCAGTGGAGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCTGAGTTTATGGGGTTGCACAAATAAAATGAGCAGTGGAGGTGC  400

seq1  TCTCCTAAGACTCCAATATAATTCCATGATGTGTACAGCCTTCCACCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGACTCCAATATAATTCCATGATGTGTACAGCCTTCCACCAGA  450

seq1  CAGGGGCCAATAGTCCTCTCCCTCACGCCTATTCTCAGCTGGGATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCAATAGTCCTCTCCCTCACGCCTATTCTCAGCTGGGATTTTAT  500

seq1  GTTCCACCAGACCCTTACAGGCTCAGTGTGAAACCTGGGCCTGATCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCAGACCCTTACAGGCTCAGTGTGAAACCTGGGCCTGATCAGGA  550

seq1  AGTAATTCAAAGTTCTGAGGTAAAGAAAGAGATACCATCTTTGGTGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCAAAGTTCTGAGGTAAAGAAAGAGATACCATCTTTGGTGTGGC  600

seq1  TGAAAATTTTTAATGAATTTCCAGTTTACCCTATACTAGCATTAATCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTTTAATGAATTTCCAGTTTACCCTATACTAGCATTAATCTGC  650

seq1  TACAATTGCTAATATTTTCCTATGAGATTGTTCCTTTCATTTTTTACGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGCTAATATTTTCCTATGAGATTGTTCCTTTCATTTTTTACGTT  700

seq1  TTTATGTTTATTGGCAAAGTGTTTCAATGCTTTCATCATCCTTTTAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTATTGGCAAAGTGTTTCAATGCTTTCATCATCCTTTTAATTG  750

seq1  TGGCTCTGTGATACTTTACATTCTAAATATTG-TTTTTTTTTCTTTTTGT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGCTCTGTGATACTTTACATTCTAAATATTGTTTTTTTTTTCTTTTTGT  800

seq1  TTTGTGGAATACTGACCAGTTTTGTTGA-TTTTTTTTTCTTCTCTCCCTT  848
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGTGGAATACTGACCAGTTTTGTTGATTTTTTTTTTCTTCTCTCCCTT  850

seq1  TGAGTTGAAGTTTTCCTATGTAGCTATACCCTGAACCTTTCTGTGTCATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGAAGTTTTCCTATGTAGCTATACCCTGAACCTTTCTGTGTCATA  900

seq1  GTGCTGGGATTTCAGGATATTCCTGCCATACCTGCCTGTCTCTCGCTTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTTCAGGATATTCCTGCCATACCTGCCTGTCTCTCGCTTAC  950

seq1  AGTGGTGACTTTCCTGCTGGGTCGGGAGGCAAATTTAGTTCCAGCTCCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGACTTTCCTGCTGGGTCGGGAGGCAAATTTAGTTCCAGCTCCTC  1000

seq1  TGTAGACTGAGGCAG-AAACATTGTTTCAGAACCCAGTTCAAGGCCAGGC  1047
      ||||||||||||||| |||||||||||| | || |||||||||||||| |
seq2  TGTAGACTGAGGCAGAAAACATTGTTTCCG-ACTCAGTTCAAGGCCAGCC  1049

seq1  TGGACAACAGTGAGAATCTGTC  1069
      | |||| |||||||||||||||
seq2  TTGACACCAGTGAGAATCTGTC  1071

seq1: chr12_53742522_53743704
seq2: B6Ng01-152D17.g_69_1246 (reverse)

seq1  GCTTTCCCAGGCTGTTGGGCTCAGCTGCCATCAGCAGGGGTTCAGTCTCC  50
      ||||||||||| ||| ||  ||| |  ||||||   ||| |||||||| |
seq2  GCTTTCCCAGGGTGTGGGATTCA-CGTCCATCAAGCGGGATTCAGTCT-C  48

seq1  TTAC-TCTGC-TCCACTGCTAGCACTGAGAGAAGCAAGGGGCTAACTTAG  98
      |||| ||||| |||||||||||||   |||||||||||||   |||||| 
seq2  TTACTTCTGCTTCCACTGCTAGCA--TAGAGAAGCAAGGG--CAACTTA-  93

seq1  AGGTCCCGGGAAAGAGCCCAGGAGAGGCCCCAGGGACTGGC-TCTCAAAC  147
      |||| |||| |||||| ||||||| ||||| ||| |||||| | ||||||
seq2  AGGTTCCGGAAAAGAG-CCAGGAGGGGCCCAAGGAACTGGCTTTTCAAAC  142

seq1  TCAGGATCATCTGCTGTCTGCAAGGCCCTCCTCTAAGATGTCTTGGAATC  197
      ||||   |||||||| ||||||| |||||||||||| || ||||||||||
seq2  TCAGATACATCTGCTTTCTGCAA-GCCCTCCTCTAAAATTTCTTGGAATC  191

seq1  ACATGGCACAGTAGTGAGCAGACTTTCTATATAAAGGTGCAGAAAATAGG  247
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCACAGTAGTGAGCAGACTTTCTATATAAAGGTGCAGAAAATAGG  241

seq1  AGCTCAATAATTGTCCACTGCCTAGCTAGGCAAGCAGGAAGCCTCAAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAATAATTGTCCACTGCCTAGCTAGGCAAGCAGGAAGCCTCAAAAT  291

seq1  GAACATGCCTGCCCAGTGTGCCACAGGTCATCCCCTAGGCTGAACATGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCCTGCCCAGTGTGCCACAGGTCATCCCCTAGGCTGAACATGCC  341

seq1  TGCCCAGTGTGTGG-TTCAGGTCACCCCCTAGGCTCTACTTCCACCATCA  396
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTGTGTGGTTTCAGGTCACCCCCTAGGCTCTACTTCCACCATCA  391

seq1  TCTCTTCCCCCTTTTGATGTCTTGGGAAAAGTCTAAACTTTTCTTTACAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCCCCTTTTGATGTCTTGGGAAAAGTCTAAACTTTTCTTTACAA  441

seq1  AAAAAAATCAACACTAAAACCTTTGGCTGCCCAAGTCAGGCTGTCATTAG  496
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAAAAATCAACACTAAAACCTTTGGCTGCGCAAGTCAGGCTGTCATTAG  491

seq1  GTTTTGGATGACTTAAAGGCGCAGAAAAGACAGGTGAGGTTGGCTTGAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGATGACTTAAAGGCGCAGAAAAGACAGGTGAGGTTGGCTTGAAC  541

seq1  TCTCCTCTTTTGGCATCCAGGAGACTCAGACTCCACAGAAAACCCTTAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTTTGGCATCCAGGAGACTCAGACTCCACAGAAAACCCTTAAA  591

seq1  ACCAATATCAGCCTTTTTTTCAGACCTCACTGGAGAAGCTGAGGTAGGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATCAGCCTTTTTTTCAGACCTCACTGGAGAAGCTGAGGTAGGCT  641

seq1  GCGTTGACTTCAAGGCCAGCCACATGCTAAGACTGTCTGAAACAAATAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGACTTCAAGGCCAGCCACATGCTAAGACTGTCTGAAACAAATAAC  691

seq1  AGGGAAACAAACCAAAACAAATCAGGCAAGCAGATCAACACCAAATGTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAAACCAAAACAAATCAGGCAAGCAGATCAACACCAAATGTAC  741

seq1  CTAGTGTCAAGCAAAGGATGCCTGGGGGATGCTGCCAGACTTCCTAGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTCAAGCAAAGGATGCCTGGGGGATGCTGCCAGACTTCCTAGTGT  791

seq1  GTGTTTAGAACACTATTCCTTCTCTTTTGGGCCACAGGCCTGTATCAGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGAACACTATTCCTTCTCTTTTGGGCCACAGGCCTGTATCAGTG  841

seq1  AAATTATATTTGGATATAAAGCTTATCTTACAAAGAGGGTATATTTTGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATTTGGATATAAAGCTTATCTTACAAAGAGGGTATATTTTGGA  891

seq1  CTGGTTCTGTTTTTGAAGCATAGTAGCTGTCTAGTTTTGTTGATTATGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTGTTTTTGAAGCATAGTAGCTGTCTAGTTTTGTTGATTATGAA  941

seq1  TTATCTAGAAGGGATGGATTTACAGAATATGTATATTCTGGACCGTGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAGAAGGGATGGATTTACAGAATATGTATATTCTGGACCGTGTTT  991

seq1  GTGAAAAATTCACCTTGAAGGAAGGCACTTTAAACATCTCACAGTTGGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATTCACCTTGAAGGAAGGCACTTTAAACATCTCACAGTTGGAA  1041

seq1  AGAGAGACACATTTAAGTTTTCCATTGTTCCTTCTTCTTAGATGTGCAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACACATTTAAGTTTTCCATTGTTCCTTCTTCTTAGATGTGCAAG  1091

seq1  GTTGTAGATGACCTCTCAATGTGTAGGCAGGCACCATCTCATAGGCTTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGATGACCTCTCAATGTGTAGGCAGGCACCATCTCATAGGCTTTA  1141

seq1  TCCACACCATGACTTCATCTGAATGTCTCAAGAATTC  1183
      |||||||||||||||||||||||||||||||||||||
seq2  TCCACACCATGACTTCATCTGAATGTCTCAAGAATTC  1178