BAC Information

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BAC

Clone NameB6Ng01-152E20
Chromosome12 (Build37)
Map Location 77,866,892 - 77,993,107
singlet/doubletdoublet
Overlap geneChurc1, Gpx2, Rab15, Fntb
Upstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1
Downstream geneMax, LOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152E20.bB6Ng01-152E20.g
ACCDH947909DH947910
length1,1531,047
definitionDH947909|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E20, 5' end.DH947910|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,866,892 - 77,868,047)(77,992,059 - 77,993,107)
sequence
gaattctttttacctcattctgtcgctgaatgaacgtatgaggtcatttt
aaaatccaccttttttgagacaggttttgtgtagcccaggctggtttcga
actctctatgtacccgaggaggattttgtttgactttgatcctccttcca
catacctcttgaacgctggcattacaagcgcgcgccactgggctcaattt
agaaaatgttagggatggaagtgagagcttggtgcggaggcaagcttgcc
accgactgagctacacttccagcctctggttctaacccacgtttgaagat
ggcagaactggtccccagagaggacctatcacctgcccaagtatgagagc
cgagactagattgtgatctccctctccgcctcgtcccgttctcttttcct
tgcgccttccctttccccttcccttcttagcactgaggcctgaccccagc
atgtgtccctaccaggcaagcactctgccaacagaactataccccctgct
cttattttaagcctttgcgcctctcgggcttaggaggttttgaggcttgg
ctcttactgttctttcagggaatcactactgcacgttgatgtgtgtagag
agtgcttggctgctctgtgaaggagtgactgccaaggctctggggctgct
tctgggcttgcaatttgggggcataggattgacaggctgctgtttaaacg
tagtgaaaaggaagattgagcaggaatggggctgcggtgttctccttcca
cataaggtgggtttggacgatgatttagaggaggaaggatctgcagacaa
tagcaagatgaaggacccttgagttggctgggagggaaaacatcctcata
gttctttctcttaatagtttgtgagtgatgggcacacacctctaatccca
gcactggggagacagaggcaagcagatctccagttcaggccagcctggtc
tatagagctagtttgaggacagctaggagctacactgagaaaccctgcct
gaaaaaacaaccaaaaaccccacaaaagaaaactttcttttttgagttta
tgtaggtccttttggaatggttgtgtagaggaattttcatatgggtacac
accactttggttttaaggctatacattctcatattcacattaaatgtccc
ctc
gaattctgtcttcctaggcacgacatgactgttgccatcttgaaatcttg
attacctacgtgacactcagaaaggggagaggagggtgtttagctcttca
gcaagactccagcctctcactccttcctgcccgattctgctacctgtggc
tttagagaacacaggatgtacaagattggctggggacaggaactccaacc
gcgcagcttttgtgaccatcacacgcctggtgatgcagctgcccatgtct
cccatattctctgaacaactccagcgcatttgatggttcaccaagcagga
cctgcatgaaattttctttgacctcttgatgtcctctctatctgagatgg
acagaaatagactcccaagaaaagtcagacaacagacacccaaaccacaa
gtcccagatcacacacagagctggagagggaaccaggtacaactttctat
gtggcttctttctgtccccatacccagcaccatggctctcaggcttgtct
gctttgatcttctctttaccactgtcacccaaacccaagccattgtcatc
caactggatcaaccttctgtttgccccctcctccttccagtccagaaacc
agaggacatgtctggaacaccacaattgattcactgcaaccagagaacta
ggagagtacaggtcagctcatatcactgcctacttaaaatccgtatgaat
ttatttgccagcctctgtaatgagagctcagagcctcctcaatcggtccc
cagcctgtcccagctcattgttccctggctcccacaggcctcctacagct
cagttagctgtcagctaactgctcatccttgaacacatcctgctctgtca
cttgtctctcctctctccccagagaacactacaaatgtcatagtttattc
acgaataaatgaataaatgaaattgataaatatggcccccttttgtttgt
ttttcagtactagggatgaatccggtgtctagataaacgagtaaatgctc
ttaggtatagagctgcgtgtcaaacttccatttggcgtttttacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77866892_77868047
seq2: B6Ng01-152E20.b_46_1197

seq1  GAATTCTTTTTACCTCATTCTGTCGCTGAATGAACGTATGAGGTCATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTACCTCATTCTGTCGCTGAATGAACGTATGAGGTCATTTT  50

seq1  AAAATCCACCTTTTTTGAGACAGGTTTTGTGTAGCCCAGGCTGGTTTCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCACCTTTTTTGAGACAGGTTTTGTGTAGCCCAGGCTGGTTTCGA  100

seq1  ACTCTCTATGTACCCGAGGAGGATTTTGTTTGACTTTGATCCTCCTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTATGTACCCGAGGAGGATTTTGTTTGACTTTGATCCTCCTTCCA  150

seq1  CATACCTCTTGAACGCTGGCATTACAAGCGCGCGCCACTGGGCTCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTCTTGAACGCTGGCATTACAAGCGCGCGCCACTGGGCTCAATTT  200

seq1  AGAAAATGTTAGGGATGGAAGTGAGAGCTTGGTGCGGAGGCAAGCTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGTTAGGGATGGAAGTGAGAGCTTGGTGCGGAGGCAAGCTTGCC  250

seq1  ACCGACTGAGCTACACTTCCAGCCTCTGGTTCTAACCCACGTTTGAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACTGAGCTACACTTCCAGCCTCTGGTTCTAACCCACGTTTGAAGAT  300

seq1  GGCAGAACTGGTCCCCAGAGAGGACCTATCACCTGCCCAAGTATGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACTGGTCCCCAGAGAGGACCTATCACCTGCCCAAGTATGAGAGC  350

seq1  CGAGACTAGATTGTGATCTCCCTCTCCGCCTCGTCCCGTTCTCTTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACTAGATTGTGATCTCCCTCTCCGCCTCGTCCCGTTCTCTTTTCCT  400

seq1  TGCGCCTTCCCTTTCCCCTTCCCTTCTTAGCACTGAGGCCTGACCCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCTTCCCTTTCCCCTTCCCTTCTTAGCACTGAGGCCTGACCCCAGC  450

seq1  ATGTGTCCCTACCAGGCAAGCACTCTGCCAACAGAACTATACCCCCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCCTACCAGGCAAGCACTCTGCCAACAGAACTATACCCCCTGCT  500

seq1  CTTATTTTAAGCCTTTGCGCCTCTCGGGCTTAGGAGGTTTTGAGGCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTAAGCCTTTGCGCCTCTCGGGCTTAGGAGGTTTTGAGGCTTGG  550

seq1  CTCTTACTGTTCTTTCAGGGAATCACTACTGCACGTTGATGTGTGTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTGTTCTTTCAGGGAATCACTACTGCACGTTGATGTGTGTAGAG  600

seq1  AGTGCTTGGCTGCTCTGTGAAGGAGTGACTGCCAAGGCTCTGGGGCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGGCTGCTCTGTGAAGGAGTGACTGCCAAGGCTCTGGGGCTGCT  650

seq1  TCTGGGCTTGCAATTTGGGGGCATAGGATTGACAGGCTGCTGTTTAAACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTTGCAATTTGGGGGCATAGGATTGACAGGCTGCTGTTTAAACG  700

seq1  TAGTGAAAAGGAAGATTGAGCAGGAATGGGGCTGCGGTGTTCTCCTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAAAGGAAGATTGAGCAGGAATGGGGCTGCGGTGTTCTCCTTCCA  750

seq1  CATAAGGTGGGTTTGGACGATGATTTAGAGGAGGAAGGATCTGCAGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATAAGGTGGGTTTGGACGATGATTTAGAGGAGGAAGGATCTGCA-GACA  799

seq1  ATAGCAAGATGAAGGACCCTTGAGTTGGCTGGGAGGGAAAACATCCTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGATGAAGGACCCTTGAGTTGGCTGGGAGGGAAAACATCCTCAT  849

seq1  AGTTCTTTCTCTTAATAGTTTGTGAGTGATGGGCACACACCTCTAATCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTCTCTTAATAGTTTGTGAGTGATGGGCACACACCTCTAATCCC  899

seq1  AGCACTGGGGAGACAGAGGCAAGCAGATCTCCAAGTTCAAGGCCAGCCTG  950
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  AGCACTGGGGAGACAGAGGCAAGCAGATCTCC-AGTTC-AGGCCAGCCTG  947

seq1  GTCTATAGAGCTAGTTTGAGGACAGCTA-GAGCTACACTGAGAAACCCTG  999
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTCTATAGAGCTAGTTTGAGGACAGCTAGGAGCTACACTGAGAAACCCTG  997

seq1  TCTTGAAAAAACAA-CAAAAACCCCACAAAAAGAAAAC-TTCTTTTTTGA  1047
       | ||||||||||| |||||||||||| |||||||||| |||||||||||
seq2  -CCTGAAAAAACAACCAAAAACCCCAC-AAAAGAAAACTTTCTTTTTTGA  1045

seq1  GTTATATGTAAGT-CTTTTGAGATTGTTATGTTAGAGGAATTTTCATTAT  1096
      ||| |||||| || ||||||  || ||| || |||||||||||||||   
seq2  GTT-TATGTAGGTCCTTTTGGAATGGTTGTG-TAGAGGAATTTTCATATG  1093

seq1  GGTACA-ACCACTTTGGTTTATAAAGTCATTACCATTCATTATCAAAT--  1143
      |||||| ||||||||||||| ||| |      | || |||| ||| ||  
seq2  GGTACACACCACTTTGGTTT-TAAGG------CTATACATTCTCATATTC  1136

seq1  ---TTAAATGTCCCCT  1156
         |||||||||||||
seq2  ACATTAAATGTCCCCT  1152

seq1: chr12_77992059_77993107
seq2: B6Ng01-152E20.g_69_1115 (reverse)

seq1  AAAGT-AAAACGCAAAATGGAAGTTTGACACGCAGCTC--TAACTTAGAG  47
      ||||| ||||||| ||||||||||||||||||||||||  || || ||||
seq2  AAAGTAAAAACGCCAAATGGAAGTTTGACACGCAGCTCTATACCTAAGAG  50

seq1  CATTTACTCGTTTATCTAGGACACCGGATTCAATCCCTAGTACTGGAAAA  97
      |||||||||||||||||| |||||||||||| |||||||||||| |||||
seq2  CATTTACTCGTTTATCTA-GACACCGGATTC-ATCCCTAGTACT-GAAAA  97

seq1  ACAAACAAAAAGGGGGCCATTATTTATTCAATTTCATTTATTCATTTATT  147
      |||||| |||||||||||| |||||| |||||||||||||||||||||||
seq2  ACAAAC-AAAAGGGGGCCA-TATTTA-TCAATTTCATTTATTCATTTATT  144

seq1  CGTGAATTAACTATGACATTTGTAGTGTTCTCTGGGGAGAGAGGAGAGAC  197
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAATAAACTATGACATTTGTAGTGTTCTCTGGGGAGAGAGGAGAGAC  194

seq1  AAGTGACAGAGCAGGATGTGTTCAAGGATGAGCAGTTAGCTGACAGCT-A  246
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGTGACAGAGCAGGATGTGTTCAAGGATGAGCAGTTAGCTGACAGCTAA  244

seq1  CTGAGCTGTAGGAGGCCTGTGGGAGCCAGGGAACAATGAGCTGGGACAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGTAGGAGGCCTGTGGGAGCCAGGGAACAATGAGCTGGGACAGG  294

seq1  CTGGGGACCGATTGAGGAGGCTCTGAGCTCTCATTACAGAGGCTGGCAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACCGATTGAGGAGGCTCTGAGCTCTCATTACAGAGGCTGGCAAA  344

seq1  TAAATTCATACGGATTTTAAGTAGGCAGTGATATGAGCTGACCTGTACTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCATACGGATTTTAAGTAGGCAGTGATATGAGCTGACCTGTACTC  394

seq1  TCCTAGTTCTCTGGTTGCAGTGAATCAATTGTGGTGTTCCAGACATGTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTCTCTGGTTGCAGTGAATCAATTGTGGTGTTCCAGACATGTCC  444

seq1  TCTGGTTTCTGGACTGGAAGGAGGAGGGGGCAAACAGAAGGTTGATCCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTCTGGACTGGAAGGAGGAGGGGGCAAACAGAAGGTTGATCCAG  494

seq1  TTGGATGACAATGGCTTGGGTTTGGGTGACAGTGGTAAAGAGAAGATCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGACAATGGCTTGGGTTTGGGTGACAGTGGTAAAGAGAAGATCAA  544

seq1  AGCAGACAAGCCTGAGAGCCATGGTGCTGGGTATGGGGACAGAAAGAAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAAGCCTGAGAGCCATGGTGCTGGGTATGGGGACAGAAAGAAGC  594

seq1  CACATAGAAAGTTGTACCTGGTTCCCTCTCCAGCTCTGTGTGTGATCTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAAAGTTGTACCTGGTTCCCTCTCCAGCTCTGTGTGTGATCTGG  644

seq1  GACTTGTGGTTTGGGTGTCTGTTGTCTGACTTTTCTTGGGAGTCTATTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGGTTTGGGTGTCTGTTGTCTGACTTTTCTTGGGAGTCTATTTC  694

seq1  TGTCCATCTCAGATAGAGAGGACATCAAGAGGTCAAAGAAAATTTCATGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCTCAGATAGAGAGGACATCAAGAGGTCAAAGAAAATTTCATGC  744

seq1  AGGTCCTGCTTGGTGAACCATCAAATGCGCTGGAGTTGTTCAGAGAATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGCTTGGTGAACCATCAAATGCGCTGGAGTTGTTCAGAGAATAT  794

seq1  GGGAGACATGGGCAGCTGCATCACCAGGCGTGTGATGGTCACAAAAGCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACATGGGCAGCTGCATCACCAGGCGTGTGATGGTCACAAAAGCTG  844

seq1  CGCGGTTGGAGTTCCTGTCCCCAGCCAATCTTGTACATCCTGTGTTCTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTTGGAGTTCCTGTCCCCAGCCAATCTTGTACATCCTGTGTTCTCT  894

seq1  AAAGCCACAGGTAGCAGAATCGGGCAGGAAGGAGTGAGAGGCTGGAGTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACAGGTAGCAGAATCGGGCAGGAAGGAGTGAGAGGCTGGAGTCT  944

seq1  TGCTGAAGAGCTAAACACCCTCCTCTCCCCTTTCTGAGTGTCACGTAGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGAGCTAAACACCCTCCTCTCCCCTTTCTGAGTGTCACGTAGGT  994

seq1  AATCAAGATTTCAAGATGGCAACAGTCATGTCGTGCCTAGGAAGACAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGATTTCAAGATGGCAACAGTCATGTCGTGCCTAGGAAGACAGAA  1044

seq1  TTC  1049
      |||
seq2  TTC  1047