BAC Information

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BAC

Clone NameB6Ng01-152G18
Chromosome6 (Build37)12 (Build37)
Map Location 6,507,734 - 6,508,37349,314,744 - 49,315,777
singlet/doubletsingletsinglet
Overlap geneShfm1
Upstream geneDync1i1, Slc25a13, EG667462, EG667468, LOC667471, LOC100040096
Downstream geneLOC545826, Dlx6as, Dlx5, Acn9, EG667500, Tac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152G18.bB6Ng01-152G18.g
ACCDH947999DH948000
length9151,031
definitionDH947999|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G18, 5' end.DH948000|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,507,734 - 6,508,373)(49,314,744 - 49,315,777)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgagttatttatatatattgaatattagtccc
ttgtctgatttaggataggtaaagatcctttcccaatcttttggtggcct
tttggccttattaacagtgtcttttgtttttttgttttttgttttttttt
tttttttttaacattaaagaacatgtttatttcattatctgcttggattt
atttttgttttataacaaaaaaataagtaaataaatgttttgatttaatc
tttttggttcagatgtcttgatcttttgcctctattcctaaattttatat
tcatgatttataagaaacttacatagtcccaataaagtccatgtaataat
tttttaatattaatcaaacagtcagatgttgggattcatcagatttccat
atccaattttacaagatgtttctatgaaatgacattatactttaatgtct
tttgtgtttcttttactgtaacatttactgaaatttttaaggaggtcctt
taaaacttgtgtttttaaaatattaatcattttagatatctgtaatttac
ttagtatctgggatattaataatgttcttaagtggttggtagagtctgtt
ggctctttggtcatacttttaagaatcatatctctattaaaattgggaaa
gtgagccctggatattttagcagtatgtatattctcaggtactgcataca
gtcatcttacacaacaatgtttatggaagttgttgacggttgccattcct
attgtctaagtgggagatttagtttagcatagaaaggactctttatagct
aatatgtgtcttttgccttacagaagctttgcagttttatgagtcccatt
tgtggattctcgatc
gaattctatttgcacaatttcaaagtccattacaattcatgtaagctgaa
atgtattgttttgcagatttgtatcattctgaaaatagccatttcccagt
cctcattttctacacagaaacagtgtttaccaggagttaatttcatacag
tgattccatttgagactatcgtcaaggtgcaaattgtgttgtcctctagt
caaacaaaaattctctgaactgtaattgggtgagcatttcataagtcaca
ctgcaagcaggatatatgacatgtaaatgatgtaccaggaaatggacact
aataatcaagtgtgtgagtacacatgataacagaattcccacatacttaa
gaatgtatccatatcttccatagaaattaatataaaaacattttaaattg
atgtctgataatttctcgcatgatcctaggtttcttattttctatttaaa
gtcaactttagagaaatgaatgtacattttgaagtttcgtttggacagtc
tgcagggctgtggcattctatagctcaagaaactctaaggtttagtgttg
caggcacatgtgccctatagatgctcctgctcacaatataaaggcatgga
gatgcaggttgacatatacttgccagtttactcagccatagaaagagcat
acctccccaaagaagcaatccaaatccatgagctaggtttatgggagtgc
catacaggctgagcttttccttttgtttcgttttacaacctctttgaatt
cagtgatttaaaaaattaaactggtaattaatgcacagtattttttgttt
tgagaaacaaagatttggtttgttctattctgtgttttatttgatattgc
ttgtttgttttttccttatcttcactacccacaaaaatattagaatctca
tcaattccaagaatcacaagaaagaaaataggtggaggggagggaggaca
caagattcttgctctttatataaaattaataatgagttcttctcttggac
ggaattttatttttatatttaattatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6507734_6508373
seq2: B6Ng01-152G18.b_260_903 (reverse)

seq1  ACATATTAGCTTCAAAGAGTCCTTTCTATGCTAAACTAAATCTCCCACTT  50
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ACATATTAGCTATAAAGAGTCCTTTCTATGCTAAACTAAATCTCCCACTT  50

seq1  AGACAGTAGGAATGGCAACCGTCAACAACTTCCATAAACTTTGTTGTGTA  100
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGACAATAGGAATGGCAACCGTCAACAACTTCCATAAACATTGTTGTGTA  100

seq1  AGATGACTGTATGCAGTACTTGAGAATATACATACTGCTAAAATATCCAG  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGATGACTGTATGCAGTACCTGAGAATATACATACTGCTAAAATATCCAG  150

seq1  GGCTCACTTCCCCAATTTTAATAGAGATATGATTCTTAGAAGTATGACCA  200
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  GGCTCACTTTCCCAATTTTAATAGAGATATGATTCTTAAAAGTATGACCA  200

seq1  AAGAGCCAACAGACTCTA-CAACCACTTAAGAACATTATTAATATCCCAG  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGAGCCAACAGACTCTACCAACCACTTAAGAACATTATTAATATCCCAG  250

seq1  AAACTAAGTA----ACAGATATCTAAAATGATTAATATTTTAAAAACACA  295
      | ||||||||    ||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGTAAATTACAGATATCTAAAATGATTAATATTTTAAAAACACA  300

seq1  AGTTTTAAAGGGCCTCCTTAAAAATTTCAGTAAATGTTACAGTAAAAGAA  345
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAGGACCTCCTTAAAAATTTCAGTAAATGTTACAGTAAAAGAA  350

seq1  ACACAAAAGACATTAAAGTATAATGTCATTTCATAGAAACATCTTGTAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGACATTAAAGTATAATGTCATTTCATAGAAACATCTTGTAAA  400

seq1  ATTGGATACGGAACTCTCATGAATCCCAACATCTGACTGTTTGATTAATA  445
      |||||||| |||| ||| ||||||||||||||||||||||||||||||||
seq2  ATTGGATATGGAAATCTGATGAATCCCAACATCTGACTGTTTGATTAATA  450

seq1  TTAAAAAATTATTACATGGACTTTATTGGGACTATGTAAGTTTCTTATAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATTATTACATGGACTTTATTGGGACTATGTAAGTTTCTTATAA  500

seq1  ATCATGAATATAAAATTTAGGAATAGAGGCAAAAGATCAAGACATCTGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAATATAAAATTTAGGAATAGAGGCAAAAGATCAAGACATCTGAA  550

seq1  CCAAAAAGATTAAATCAAAACATTTATTTACTTATTTTTTTTGTTATAAA  595
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCAAAAAGATTAAATCAAAACATTTATTTACTTA-TTTTTTTGTTATAAA  599

seq1  ACAAAAATAAATTGAAGCAGATAATGAAATAAACATGTTCTTTAA  640
      ||||||||||||  |||||||||||||||||||||||||||||||
seq2  ACAAAAATAAATCCAAGCAGATAATGAAATAAACATGTTCTTTAA  644

seq1: chr12_49314744_49315777
seq2: B6Ng01-152G18.g_69_1099 (reverse)

seq1  AATAAATAAATAAATAATAAAAATAAAAATTCTGTCC-AGAGAGGAACTC  49
      ||||||||| ||||| |||||||| ||||||| |||| ||||| ||||||
seq2  AATAAATAATTAAAT-ATAAAAAT-AAAATTCCGTCCAAGAGAAGAACTC  48

seq1  ATTATTATTTTTATATATAAGAGCAAGAATCTTTGTGTCCTTCCCTCCCC  99
      ||||||| ||||||||| ||||||||||||| |||||||| |||||||||
seq2  ATTATTAATTTTATATA-AAGAGCAAGAATC-TTGTGTCC-TCCCTCCCC  95

seq1  TCCACCTATTTTTCTTTCTTGTGATTCTTGGAATTGATGAGATTCTAATA  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTA-TTTTCTTTCTTGTGATTCTTGGAATTGATGAGATTCTAATA  144

seq1  TTTTTGTGGGTAGTGAAGATAAGGAAAAAACAAACAAGCAATATC-AATA  198
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTTGTGGGTAGTGAAGATAAGGAAAAAACAAACAAGCAATATCAAATA  194

seq1  AAACACAGAATAGAACAAACCAAATCTTTGTTTCTCAAAAC-AAAAATAC  247
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAACACAGAATAGAACAAACCAAATCTTTGTTTCTCAAAACAAAAAATAC  244

seq1  TGTGCATTAATTACCAGTTTAATTTTTTAAATCACTGAATTCAAAGAGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTAATTACCAGTTTAATTTTTTAAATCACTGAATTCAAAGAGGT  294

seq1  TGTAAAACGAAACAAAAGGAAAAGCTCAGCCTGTATGGCACTCCCATAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACGAAACAAAAGGAAAAGCTCAGCCTGTATGGCACTCCCATAAA  344

seq1  CCTAGCTCATGGATTTGGATTGCTTCTTTGGGGAGGTATGCTCTTTCTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCATGGATTTGGATTGCTTCTTTGGGGAGGTATGCTCTTTCTAT  394

seq1  GGCTGAGTAAACTGGCAAGTATATGTCAACCTGCATCTCCATGCCTTTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGTAAACTGGCAAGTATATGTCAACCTGCATCTCCATGCCTTTAT  444

seq1  ATTGTGAGCAGGAGCATCTATAGGGCACATGTGCCTGCAACACTAAACCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGCAGGAGCATCTATAGGGCACATGTGCCTGCAACACTAAACCT  494

seq1  TAGAGTTTCTTGAGCTATAGAATGCCACAGCCCTGCAGACTGTCCAAACG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTCTTGAGCTATAGAATGCCACAGCCCTGCAGACTGTCCAAACG  544

seq1  AAACTTCAAAATGTACATTCATTTCTCTAAAGTTGACTTTAAATAGAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAAAATGTACATTCATTTCTCTAAAGTTGACTTTAAATAGAAAA  594

seq1  TAAGAAACCTAGGATCATGCGAGAAATTATCAGACATCAATTTAAAATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACCTAGGATCATGCGAGAAATTATCAGACATCAATTTAAAATGT  644

seq1  TTTTATATTAATTTCTATGGAAGATATGGATACATTCTTAAGTATGTGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTAATTTCTATGGAAGATATGGATACATTCTTAAGTATGTGGG  694

seq1  AATTCTGTTATCATGTGTACTCACACACTTGATTATTAGTGTCCATTTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTATCATGTGTACTCACACACTTGATTATTAGTGTCCATTTCC  744

seq1  TGGTACATCATTTACATGTCATATATCCTGCTTGCAGTGTGACTTATGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATCATTTACATGTCATATATCCTGCTTGCAGTGTGACTTATGAA  794

seq1  ATGCTCACCCAATTACAGTTCAGAGAATTTTTGTTTGACTAGAGGACAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACCCAATTACAGTTCAGAGAATTTTTGTTTGACTAGAGGACAAC  844

seq1  ACAATTTGCACCTTGACGATAGTCTCAAATGGAATCACTGTATGAAATTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTGCACCTTGACGATAGTCTCAAATGGAATCACTGTATGAAATTA  894

seq1  ACTCCTGGTAAACACTGTTTCTGTGTAGAAAATGAGGACTGGGAAATGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGTAAACACTGTTTCTGTGTAGAAAATGAGGACTGGGAAATGGC  944

seq1  TATTTTCAGAATGATACAAATCTGCAAAACAATACATTTCAGCTTACATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGAATGATACAAATCTGCAAAACAATACATTTCAGCTTACATG  994

seq1  AATTGTAATGGACTTTGAAATTGTGCAAATAGAATTC  1034
      |||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATGGACTTTGAAATTGTGCAAATAGAATTC  1031