BAC Information

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BAC

Clone NameB6Ng01-154N03
Chromosome12 (Build37)12 (Build37)
Map Location 89,532,977 - 89,534,38789,496,719 - 89,497,924
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093
Downstream geneLOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154N03.bB6Ng01-154N03.g
ACCDH949763DH949764
length1,0751,176
definitionDH949763|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N03, 5' end.DH949764|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,532,977 - 89,534,387)(89,496,719 - 89,497,924)
sequence
gaattctttataaagcgttgaataatatgaagatgttaaattactggcca
gcataatggctcagggaataaagcctctcatgaccaagcttgacaactgg
aattggatgctggagatccacatggtggaaggatagaaggaattcctctg
gcctccacatatggtatatacatgtgtgaacacacacacacacacacaca
cacacaaacacactaaataaataaacaaataaataaataaacaaacaaat
aaacctgtataagtcaaggctgtgggaaaatttatacatgacatgatcca
acttctttgataaaatagtaaatgaaaataaaggtgggaatgctggaaag
gtaactcggtgctttagagtatttactgctcttacaaaggactggagttc
gattcccagaacccacatggcagctcacaaccatctgtaactccagtcct
agaggatctgttgctttcttttgatctcctccttcactaggtccacatgt
ggaacacagacatacatgcaggcaacacaatcatttccatgaaaataatg
tttcattttattagtattggtgatacattccagctttcctactttcaagg
atgtttgaagtttttcatatatcgaatattctacaggttcacattcaaaa
tgtttaatttcccattgaagggggtgcatgccattaatcccatcacttgg
gaggcagaggcaggcagatctctgagttcaaggccattctggctttcgct
gaaaggacccagttatagctgtctcttgtgagactatgtcggggtctagc
aaacacagaagtggatgatcacagtcagctattggatgggtcacacggcc
cccaatggaggagctagagaattacccaaggagctatagggaactgcaac
cctataggtggaacaacaatatgaactaaccagtacccgggaggtcttgt
ctttagctgcatatgtatcaaagatggcctagtcgcatcactgcaaagag
agcccatgacttgcaactttatatgcctcagtacatgggaacgcagggcc
aaaaggagagtgggtggtagggaat
gaattcttctgtgcatatgcatgtgtacacatgtgatgtgtatttgtgtg
tgcttgtgtgtgcaggtgcacatgttggaggtgctcttctccacaagtgt
ccatactctgttctttctacccatctttcaaggaagggatgactttgtag
gattctcaagggatgcttggctaccaagtgatggattccaaggttgaaca
aaagtacaactttctaaaatccatatttgggatgatctctttctatgctg
ccaccagccagctccagtggccctatagataccagcaggaggctcatgct
catggcttaagtgatggctggcacagatcttaaacatggagcctctctca
gatgtgacgtccactctcctgtttgacttcttggagttgtgtgggaatgc
cctcatgaagcagtaccaggtccagttctggaaaatcatgcttctcatcc
ctgaggactacttgcccagaattgaagccatcacgagctcagggtccttc
atacctctcaagcagttcttggagaaatgtctgcatggcagtgaggttcc
tgtccccagagcctttctgatgtccaccgtctgcccctcttgatgccctt
catcctactgtgtggcagaaggggcagtagtaaagccactgagaaagaga
atttggaagaatcatgtaagattgagaaatttgttagtgtgtttttatat
atctgtaccttgtgaatgagtcttttagggctggatagatggctcagtgt
tgagcaataatgaatcttccagagttcttgagttcaataaccagcaaaca
cagggtggctcacaaccatctataatgggatcctatgcactgttctcatg
tgtatctgaaaacaactgcagtgtacaattagaaataaaataaataaatc
tttttttaaatgaggcttttgtacttcacagccctttgtaggtctgtttc
agtttggtagttctatagtgtcacagacagatacaaactggcctttctat
ttcacaagtcacaggaagggtaagaaataacactcctggcatatagctag
acatagctcacatgtattagacacatgccccaattatgctcatgacacct
tatttttatagccgagctgggatgaagtctatgtcctcacaaggaatgat
acgaaatggtcatttacatgaatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89532977_89534387
seq2: B6Ng01-154N03.b_49_1123

seq1  GAATTCTTTATAAAGCGTTGAATAATATGAAGATGTTAAATGACTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTCTTTATAAAGCGTTGAATAATATGAAGATGTTAAATTACTGGCCA  50

seq1  GCATAATGGCTCAGAGAATAAAGCCTCTCATGGCCAAGCCTGACAACTGG  100
      |||||||||||||| ||||||||||||||||| |||||| ||||||||||
seq2  GCATAATGGCTCAGGGAATAAAGCCTCTCATGACCAAGCTTGACAACTGG  100

seq1  AATAGGATGCTGGAGATCCACATGGTGGAAGGATAGAAGGAATTCCTCTG  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATGCTGGAGATCCACATGGTGGAAGGATAGAAGGAATTCCTCTG  150

seq1  GCCTCCACATATGGTATATATATGTGTGAACACACACACACACACACAAA  200
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  GCCTCCACATATGGTATATACATGTGTGAACACACACACACACACACACA  200

seq1  CACACTAAATAAATAAATAAACTCTTACACGTGTTCGCTACAGGCCAGGA  250
      |||||                                             
seq2  CACAC---------------------------------------------  205

seq1  AAGACGCAGCAAACCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACAT  300
                                                        
seq2  --------------------------------------------------  205

seq1  CTTCAGGAGCCAGAGAGCAAGAGGAGAAAGAATGGCAAAACCCCGTCCCT  350
                                                        
seq2  --------------------------------------------------  205

seq1  TTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTG  400
                                                        
seq2  --------------------------------------------------  205

seq1  CAGACCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGGCGGG  450
                                                        
seq2  --------------------------------------------------  205

seq1  AAAACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACACAGC  500
       ||||                                      ||||   
seq2  -AAAC--------------------------------------ACAC---  213

seq1  TGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCCAACAATAA  550
                      ||                           |||||
seq2  ----------------TA---------------------------AATAA  220

seq1  ACAAACAAACAAATAAATAAACAAACAAATAAACCTGTATAAGTCAAGGC  600
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAATAAATAAATAAACAAACAAATAAACCTGTATAAGTCAAGGC  270

seq1  TGTGGGAAAATTTATACATGACACGATCCAACTTATTTGATAAAATAGTA  650
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TGTGGGAAAATTTATACATGACATGATCCAACTTCTTTGATAAAATAGTA  320

seq1  AATG------AAGGTGGGAATGCTGGAAAGGTAACTCGGTGCTTTAGAGT  694
      ||||      ||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATAAAGGTGGGAATGCTGGAAAGGTAACTCGGTGCTTTAGAGT  370

seq1  ATTTACTGCTCTTACAGAGGACTGGAGTTCGATTCCCAGAACCCACATGG  744
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTACTGCTCTTACAAAGGACTGGAGTTCGATTCCCAGAACCCACATGG  420

seq1  CAGCTCACAACCATCTGTAACTCCAGTCCTAGAGGATCTGTTGCTTTCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACAACCATCTGTAACTCCAGTCCTAGAGGATCTGTTGCTTTCTT  470

seq1  TTGATCTCCTCCTTCACTAGGTCCACATGTGGAACACAGACATGCATGCA  844
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGATCTCCTCCTTCACTAGGTCCACATGTGGAACACAGACATACATGCA  520

seq1  GGCAACACAATCATTTCCATGAAAATAATGTTTCGTTTTATTAGTATTGG  894
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCAACACAATCATTTCCATGAAAATAATGTTTCATTTTATTAGTATTGG  570

seq1  TGATACATTCCAGCTTTCCTACTTTCAAGGATGTTTGAAGTTTTTCATAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATTCCAGCTTTCCTACTTTCAAGGATGTTTGAAGTTTTTCATAT  620

seq1  ATCGAGTATTCTACAGGTTCACATTCAAAATGTTTAATTTCCCATTGAAG  994
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAATATTCTACAGGTTCACATTCAAAATGTTTAATTTCCCATTGAAG  670

seq1  GGGGTGCATGCCATTAATCCCATCACTTGGGAGGCAGAGGCAGGCAGATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGCATGCCATTAATCCCATCACTTGGGAGGCAGAGGCAGGCAGATC  720

seq1  TCTGAGTTCAAGGCCATTCTGGCTTTCGCTGAAAGGACCCAGTTATAGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCAAGGCCATTCTGGCTTTCGCTGAAAGGACCCAGTTATAGCT  770

seq1  CTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGATC  1144
       ||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  GTCTCTTGTGAGACTATGTCGGGGTCTAGCAAACACAGAAGTGGATGATC  820

seq1  ACAGTCAGCTATTGGATGGGTCACACGGCCCCTAATGGAGGAGCTAGAGA  1194
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  ACAGTCAGCTATTGGATGGGTCACACGGCCCCCAATGGAGGAGCTAGAG-  869

seq1  AATTACCCAAGGAGCTATAGGGAACTGCAACCCTGTAGGTGGAACAACAT  1244
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  AATTACCCAAGGAGCTATAGGGAACTGCAACCCTATAGGTGGAACAACAA  919

seq1  TATGAACTAACCAGTACCCGGGAGCTCTTGTCTCTAGCTGCATATGTATC  1294
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  TATGAACTAACCAGTACCCGGGAGGTCTTGTCTTTAGCTGCATATGTATC  969

seq1  AAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTG  1344
       ||||||||||||||||  |||||||||||||||| ||||||  ||||||
seq2  -AAAGATGGCCTAGTCG--CATCACTGCAAAGAGA-GCCCAT--GACTTG  1013

seq1  CAAACTTTATATGCCCCAGTACAAGGGAACGCCAGGGCCAAAAAGGGAGA  1394
      | ||||||||||||| ||||||| ||||||| |||||||||||  |||||
seq2  C-AACTTTATATGCCTCAGTACATGGGAACG-CAGGGCCAAAA--GGAGA  1059

seq1  GTGGGTGGGTAGGGGAT  1411
      |||||| ||||||| ||
seq2  GTGGGT-GGTAGGGAAT  1075

seq1: chr12_89496719_89497924
seq2: B6Ng01-154N03.g_67_1242 (reverse)

seq1  AGTATTCCATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTT  50
      |||||||     |||||||| ||||   |||| |||| ||||||| || |
seq2  AGTATTC----ATGTAAATG-ACCA---TTTC-GTAT-CATTCCT-TG-T  38

seq1  GAGGTACATATGACTTCATTCCAGCTTCTGGCTATTATAAATAAGGTTGT  100
      |||| ||||| |||||||| ||||||   ||||| || |||||||| |||
seq2  GAGG-ACATA-GACTTCATCCCAGCT--CGGCTA-TAAAAATAAGG-TGT  82

seq1  CATGAGCAT-ATTGGAGCATGTGTCCTTATTACATGTTGGAGCTATGTCT  149
      ||||||||| ||||| |||||||||  || |||||||  |||||||||||
seq2  CATGAGCATAATTGGGGCATGTGTC--TAATACATGT--GAGCTATGTCT  128

seq1  AGCTATATGCCCAGGAGTGTTATTTTCTTACCCTTCCTTGTGACTTGTGA  199
      ||||||||| |||||||||||| |||||||||||||| ||||||||||||
seq2  AGCTATATG-CCAGGAGTGTTA-TTTCTTACCCTTCC-TGTGACTTGTGA  175

seq1  AAATTAGAAAGGCCAGGTTTGTATCTGTCTGTGACACCTGTAGAACTACC  249
      ||  ||||||||||| |||||||||||||||||||| || ||||||||||
seq2  AA--TAGAAAGGCCA-GTTTGTATCTGTCTGTGACA-CTATAGAACTACC  221

seq1  AAACCTGAAATAGACCTACAAAGGGCTGTGAAGTACAAAAGCCTCATTTA  299
      ||| |||||| |||||||||||||||||||||||||||||||||||||| 
seq2  AAA-CTGAAACAGACCTACAAAGGGCTGTGAAGTACAAAAGCCTCATTT-  269

seq1  AAAAAAAGATTTATTTATTTTTATTTCTAATTGTACACTGCAGTTGTTTT  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATTTATTTA-TTTTATTTCTAATTGTACACTGCAGTTGTTTT  318

seq1  CAGATACTCATGAGAACAGTGCATAGGATCCCATTATAGATGGTTGTGAG  399
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACACATGAGAACAGTGCATAGGATCCCATTATAGATGGTTGTGAG  368

seq1  CCACCCTGTGTTTGCTGGGAATTGAACTCAAGAACTCTGGAAGATTCATT  449
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CCACCCTGTGTTTGCTGGTTATTGAACTCAAGAACTCTGGAAGATTCATT  418

seq1  ATTGCTCAACACTGAGCCATCTATCCAGCCCTAAAAGACTCATTCACAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCAACACTGAGCCATCTATCCAGCCCTAAAAGACTCATTCACAAG  468

seq1  GTACAGATATATAAAAACACACTAACAAATTTCTCAATCTTACATGATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATATATAAAAACACACTAACAAATTTCTCAATCTTACATGATTC  518

seq1  TTCCAAATTCTCTTTCTCAGTGGCTTTACTACTGCCCCTTCTGCCACACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATTCTCTTTCTCAGTGGCTTTACTACTGCCCCTTCTGCCACACA  568

seq1  GTAGGATGAAGGGCATCAAGAGGGGCAGACGGTAAACAGCAGAAAGGCTC  649
      |||||||||||||||||||||||||||||||||  ||| |||||||||||
seq2  GTAGGATGAAGGGCATCAAGAGGGGCAGACGGTGGACATCAGAAAGGCTC  618

seq1  TGGGGA-AGGAACCTCACTGCCATGCAGACATTTCTCCAAGAACTGCTTG  698
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAGGAACCTCACTGCCATGCAGACATTTCTCCAAGAACTGCTTG  668

seq1  AGAGGTATGAAGGACCCTGAGCTCGTGATGGCTTCAATTCTGGGCAAGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATGAAGGACCCTGAGCTCGTGATGGCTTCAATTCTGGGCAAGTA  718

seq1  GTCCTCGGGGATGAGAAGCATGATTTTCCAGAACTGGACCAGGTACTGCT  798
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCCTCAGGGATGAGAAGCATGATTTTCCAGAACTGGACCTGGTACTGCT  768

seq1  TCATGAGGTCATTCCCAAACAACTCCAAGAAGTCAAACAGGAGAGTGGAC  848
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  TCATGAGGGCATTCCCACACAACTCCAAGAAGTCAAACAGGAGAGTGGAC  818

seq1  GTCACATCTGAGAGAGGCTCCATGTTTAAGATCTGTGCCAGCCACCACTT  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCACATCTGAGAGAGGCTCCATGTTTAAGATCTGTGCCAGCCATCACTT  868

seq1  AAGCCATGAGCATGAGCCTCCTGCTGGTATCTATAGGGCCACTGGAGCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGAGCATGAGCCTCCTGCTGGTATCTATAGGGCCACTGGAGCTG  918

seq1  GCTGGTGGCAGCATAGAAAGAGATCATCCCAAATATGGGTTTTAGAAAGT  998
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTGGTGGCAGCATAGAAAGAGATCATCCCAAATATGGATTTTAGAAAGT  968

seq1  TGTACTTTTGTTCAACCTTGGAATCCATCACTTGGTAGCCAAGCATCCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTTGTTCAACCTTGGAATCCATCACTTGGTAGCCAAGCATCCCT  1018

seq1  TGAGAATCCTACAAAGTCATCCCTTCCTTGAAAGATGGGTAGAAAGAACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCCTACAAAGTCATCCCTTCCTTGAAAGATGGGTAGAAAGAACA  1068

seq1  GAGTATGGACACTTGTGGAGAAGAGCACCTCCAACATGTGCACCTGCACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGACACTTGTGGAGAAGAGCACCTCCAACATGTGCACCTGCACA  1118

seq1  CACAAGCACACACAAATACACATCACATGTGTACACATGCATATGCACAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCACACACAAATACACATCACATGTGTACACATGCATATGCACAG  1168

seq1  AAGAATTC  1206
      ||||||||
seq2  AAGAATTC  1176