BAC Information

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BAC

Clone NameB6Ng01-155E06
Chromosome12 (Build37)
Map Location 52,793,654 - 52,907,026
singlet/doubletdoublet
Overlap geneAp4s1, Hectd1
Upstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3
Downstream geneEG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5, Akap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155E06.bB6Ng01-155E06.g
ACCDH950098DH950099
length982905
definitionDH950098|Mus musculus domesticus DNA, BAC clone: B6Ng01-155E06, 5' end.DH950099|Mus musculus domesticus DNA, BAC clone: B6Ng01-155E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,906,048 - 52,907,026)(52,793,654 - 52,794,562)
sequence
gaattctgagtactttaaagtcatcatggtagttctgtgagtggtaccat
taatatcgtagctattttacagatgcaaaaaatcagtgcacttgagcagg
tagtagtgacagcagagatttgaagattaggaagtctggttttaggactg
gtcgacttagttattttattatcatctcatgagtaatctgtttagttgtc
acagagatggctcagcagttatgagagtttgctgttcttacaaaggacca
gactggtttccagcatccgcattggatggctaacagccacctgtaaccac
agctctagggaggatctaattgctctggtctccatgggcacctacattta
tacacagatacacacacacacacacacacacacacgcacacacacacaca
cacatgctccttggaagaataactgtaaattttgtgcctcttttaaagta
tcagcaccaagtaagtcgaatactaggaatattgagggaatacttttaga
ttgttttattttgtgtttttgagttaggactgtgctatgaagctcagact
ggccttgaattcaccaactgagttacatctcatgaccctaggtgaagtta
tggagacaaggtggtgttatacactcaagatggcgttgaacgcagaagat
tcgtttgcctgttgtttctgtgtatggacaatgtaggcgtgtgtgctcac
tattcccaacccatagtgtctattatccccccttgttgtctagagtgtga
gtcgtaggcgagtgcttcccccctggagttatatttcgagaccgttttat
gaaattgagacccgctgtgcaaagggtggtaactctaatatcttatgttc
acgctgattttttcagtcgacagttttttcttttcttacactttcctttt
gttctttagcctattctctaatctcatgaaaattagctttgttcatcaca
actcccataatactattaaagacatatatcct
gaattcttgagaatagtgggttggatggcaaacgataactttcaaagaga
ctgatgtttagaagtcaatgaacgcagatattgtcattagtggcagaaat
tttgatcgaaacaaaatgaaagtattgtaaatagaacttaagatgaacta
aatcaacacaacgatatctttcttcatcattaaatggttttagaatgaaa
tactacatacacaaagggtcagtttttaggtgctatagtgtgcatttttc
tgtaagttctttttttggttttttcgagacagggtttctctgtatagccc
tggctgaactggaactcactttgtagaccaggctggcctcgaactcagaa
atccgcctgcctctgccacccgagtgctgggatgagaggcgtgccaccac
gcccggctttctgtaagttgaggtaacagcctggctaccgggcttggtga
accatgtctttaatcccagcactcgggaggcagaggtagacaacctgatc
tctgggtttcgtttcagaccagcttggtctgcagagttcccagacagcca
ggacaacagagaaaccctgtctggaaaagccaaaaaaggaaagaagaaga
aggaaaaaaaaaacaaaaaacctaataacctatgtaacagcaaatgaaaa
gaaaaatacacagtacttacagctatacaagaaatagtatataaaattgg
ttatgttttaaacttttattttcactctgaaagcctattcaaattttcac
atgggagcatataagtgacttcatataacttcagagagaaaaagaaatac
atttttatttttgtcatgtctgctgttataagaactaattcgatctgtac
acttataaccatatttatgaaatgtagctcttagaaatgaaaaatgaggc
tggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_52906048_52907026
seq2: B6Ng01-155E06.b_44_1025 (reverse)

seq1  AGGATATATGTGTTAAAATATTTATATGTGAGTTGTGATGAACATAACTA  50
      ||||||||||| ||  |||| |  |||| ||||||||||||||| | |||
seq2  AGGATATATGTCTT-TAATAGTATTATGGGAGTTGTGATGAACAAAGCTA  49

seq1  ATTTTCAAGGGATCAGAGAGAAGGCTAAAGAAGAGAAGG-AAGTGGAGGA  99
      ||||||| | ||| |||||  ||||||||||| | |||| ||||| | ||
seq2  ATTTTCATGAGATTAGAGAATAGGCTAAAGAACAAAAGGAAAGTGTAAGA  99

seq1  AAAG-AAAAACTGTCAACTG-GCAAATCAGAGTGAACAGAAGATGTTAAC  147
      |||| |||||||||| ||||   ||||||| ||||||| ||||| |||  
seq2  AAAGAAAAAACTGTCGACTGAAAAAATCAGCGTGAACATAAGATATTAGA  149

seq1  TGTACCACCCTTTCCACTGCGGGTCTCAACTTTATAAAACAGGCTGGAAA  197
        ||||||||||| ||| ||||||||||| || ||||||| | || ||||
seq2  GTTACCACCCTTTGCACAGCGGGTCTCAATTTCATAAAACGGTCTCGAAA  199

seq1  TATAACTCAACGGGTAAAGCACTCGCCTACAACACTCATTATAAACAAAA  247
      |||||||| | |||  |||||||||||||| || | || | || |||| |
seq2  TATAACTCCAGGGGGGAAGCACTCGCCTACGACTCACACTCTAGACAACA  249

seq1  AGGGGGGA-AAAAGAAACTTTTAGTTGGGTATAGTGAGCACACACACCTA  296
      |||||||| || ||| ||| |  |||||| ||||||||||||||| ||||
seq2  AGGGGGGATAATAGACACTATGGGTTGGGAATAGTGAGCACACACGCCTA  299

seq1  CATTCTCAATACCTAGAAACAACAGGCAAAAGAATCTTTTGAGTTCAACG  346
      |||| || ||||  |||||||||||||||| ||||||| || ||||||||
seq2  CATTGTCCATACACAGAAACAACAGGCAAACGAATCTTCTGCGTTCAACG  349

seq1  CCAACTTGACTACATAACAAAACCTTGTCTCAAAAACTTCAACTAGGGAA  396
      ||| ||||| |  ||||||  |||||||||| | ||||||| ||||||  
seq2  CCATCTTGAGTGTATAACACCACCTTGTCTCCATAACTTCACCTAGGGTC  399

seq1  CTGAGATGTAACTCAGTTGGTGAATTCAAGGCCAGTCTGAGCTACATAGC  446
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGAGATGTAACTCAGTTGGTGAATTCAAGGCCAGTCTGAGCTTCATAGC  449

seq1  AAGACCCTGACTCAAAAATACAAAATAAAACAATCTAAAAGTATTCCCTA  496
      |    ||| ||||||||| |||||||||||||||||||||||||||||| 
seq2  ACAGTCCTAACTCAAAAACACAAAATAAAACAATCTAAAAGTATTCCCTC  499

seq1  AATATTCCTAATAAACGACTTACTTGGTGCTGATACTTTAAAAGATGCAC  546
      |||||||||| ||  |||||||||||||||||||||||||||||| ||||
seq2  AATATTCCTAGTATTCGACTTACTTGGTGCTGATACTTTAAAAGAGGCAC  549

seq1  AAAATTTACAGTTATTCTTACAAGGAGCATGTGTGTGTGTGTGTGTGTGT  596
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  AAAATTTACAGTTATTCTTCCAAGGAGCATGTGTGTGTGTGTGTGTGCGT  599

seq1  GTGTGTGTGTGTGTGTGTGTGTGTATCTGTGTATAAATGTAGGTGCCCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTATCTGTGTATAAATGTAGGTGCCCAT  649

seq1  GGAGACCAGAGCAATTAGATCCTCCCTAGAGCTGTGGTTACAGGTGGCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCAGAGCAATTAGATCCTCCCTAGAGCTGTGGTTACAGGTGGCTG  699

seq1  TTAGCCATCCAATGCGGATGCTGGAAACCAGTCTGGTCCTTTGTAAGAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATCCAATGCGGATGCTGGAAACCAGTCTGGTCCTTTGTAAGAAC  749

seq1  AGCAAACTCTCATAACTGCTGAGCCATCTCTGTGACAACTAAACAGATTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTCTCATAACTGCTGAGCCATCTCTGTGACAACTAAACAGATTA  799

seq1  CTCATGAGATGATAATAAAATAACTAAGTCGACCAGTCCTAAAACCAGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGATGATAATAAAATAACTAAGTCGACCAGTCCTAAAACCAGAC  849

seq1  TTCCTAATCTTCAAATCTCTGCTGTCACTACTACCTGCTCAAGTGCACTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATCTTCAAATCTCTGCTGTCACTACTACCTGCTCAAGTGCACTG  899

seq1  ATTTTTTGCATCTGTAAAATAGCTACGATATTAATGGTACCACTCACAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGCATCTGTAAAATAGCTACGATATTAATGGTACCACTCACAGA  949

seq1  ACTACCATGATGACTTTAAAGTACTCAGAATTC  979
      |||||||||||||||||||||||||||||||||
seq2  ACTACCATGATGACTTTAAAGTACTCAGAATTC  982

seq1: chr12_52793654_52794562
seq2: B6Ng01-155E06.g_68_971

seq1  GAATTCTTGAGAATAGTGGGTTGGATGGCAAACGATAACTTTCAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGAATAGTGGGTTGGATGGCAAACGATAACTTTCAAAGAGA  50

seq1  CTGATGTTTAGAAGTCAATGAACGCAGATATTGTCATTAGTGGCAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTTAGAAGTCAATGAACGCAGATATTGTCATTAGTGGCAGAAAT  100

seq1  TTTGATCGAAACAAAATGAAAGTATTGTAAATAGAACTTAAGATGAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCGAAACAAAATGAAAGTATTGTAAATAGAACTTAAGATGAACTA  150

seq1  AATCAACACAACGATATCTTTCTTCATCATTAAATGGTTTTAGAATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACACAACGATATCTTTCTTCATCATTAAATGGTTTTAGAATGAAA  200

seq1  TACTACATACACAAAGGGTCAGTTTTTAGGTGCTATAGTGTGCATTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACATACACAAAGGGTCAGTTTTTAGGTGCTATAGTGTGCATTTTTC  250

seq1  TGTAAGTTCTTTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTCTTTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCC  300

seq1  TGGCTGAACTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAACTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAA  350

seq1  ATCCGCCTGCCTCTGCCACCCGAGTGCTGGGATGAGAGGCGTGCCACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCCTGCCTCTGCCACCCGAGTGCTGGGATGAGAGGCGTGCCACCAC  400

seq1  GCCCGGCTTTCTGTAAGTTGAGGTAACAGCCTGGCTACCGGGCTTGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCTTTCTGTAAGTTGAGGTAACAGCCTGGCTACCGGGCTTGGTGA  450

seq1  ACCATGTCTTTAATCCCAGCACTCGGGAGGCAGAGGTAGACAACCTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTTTAATCCCAGCACTCGGGAGGCAGAGGTAGACAACCTGATC  500

seq1  TCTGGGTTTCGTTTCAGACCAGCTTGGTCTGCAGAGTTCCCAGACAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTCGTTTCAGACCAGCTTGGTCTGCAGAGTTCCCAGACAGCCA  550

seq1  GGACAACAGAGAAACCCTGTCTGGAAAAGCCAAAAAAGGAAAGAAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACAGAGAAACCCTGTCTGGAAAAGCCAAAAAAGGAAAGAAGAAGA  600

seq1  AGGAAAAAAAAAACAAAAAACCTAATAACCTATGTAACAGCAAATGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAAACAAAAAACCTAATAACCTATGTAACAGCAAATGAAAA  650

seq1  GAAAAATACACAGTACTTACAGCTATACAAGAAATAGTATATAAAATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACACAGTACTTACAGCTATACAAGAAATAGTATATAAAATTGG  700

seq1  TTATGTTTTTAAACTTTTATTTTCACTCTGAAAGCCTATTCAAATTTTCA  750
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATG-TTTTAAACTTTTATTTTCACTCTGAAAGCCTATTCAAATTTTCA  749

seq1  CATTGGAGCATATAAGTGACTTCATATAACTTCAGAGAGAAAAAGAAATA  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGCATATAAGTGACTTCATATAACTTCAGAGAGAAAAAGAAATA  799

seq1  CATTTT--ATTTTGTCATGTCTGCTGTGTTATAAAGAACTAATTCGATCT  848
      ||||||   |||||||||||||||  |||||| |||||||||||||||||
seq2  CATTTTTATTTTTGTCATGTCTGC--TGTTAT-AAGAACTAATTCGATCT  846

seq1  GTTACACTTATTACCATATTTATGAAATGTAGTCTTTAGTAAATGAAGAA  898
      | ||||||||| ||||||||||||||||||||   |||| ||||||| ||
seq2  G-TACACTTATAACCATATTTATGAAATGTAGCTCTTAG-AAATGAA-AA  893

seq1  ATGAGGCTGGA  909
      |||||||||||
seq2  ATGAGGCTGGA  904