BAC Information

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BAC

Clone NameB6Ng01-155J15
Chromosome12 (Build37)
Map Location 76,130,540 - 76,256,858
singlet/doubletdoublet
Overlap geneKcnh5
Upstream geneSyt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155J15.bB6Ng01-155J15.g
ACCDH950339DH950340
length8871,096
definitionDH950339|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J15, 5' end.DH950340|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,130,540 - 76,131,425)(76,255,740 - 76,256,858)
sequence
gaattcaagattatttcccttagtgaaatcttagtaaaagattagtgaaa
agcttacgtagggaaatcttaataaatatgtatttttacttttttattaa
aagtacagcaacattgcctaactacattactatttttgaagtaggaatct
atttatctattgaaatttagtaatgttttggatggtgactacataagaaa
gacagtgaacaacaaaagcttttttcatattcttactcgggctcagagtg
aatggtgctggagagttttcaattctatatgtaattatattgtcttcaga
attgactatgaaatttgaaaacaggtgtttagtggaacatttaagtgaca
gagttataaatcctgcctcctttacaaacacacaagcatacaattctgtc
tttattccatactaatgtctaagactgaatgaaaaaaaatttttccaaag
aaaaatgtaagaatttatcaaaaaagaaaacctgccatccatgtaaaaaa
aaaaaaaaaatttcaaaaatagaaaaacagaacctgatttcccaaagttg
gtaggctctgaggagatctgatctcaatgtgtgtgcatgttccttagaat
agtgtggcacccgacagcctgaagaaaggctcacaaaaacatgtctttct
atgtgatgaaaaactacataaaaatgtttaggatgatagtaaaataaggg
tgtgtcaatattccttaaataagaggagtattaatttcagaaagtgggtc
agaggagagcagaaaagtgaacggtgagaaatccatcctagtagcaggct
tctcgtggcacactctaccttttttatcaattgttgaataattaacagtc
gcatagaagcagtgggagggagggtggggataggggg
gaattctctatatattctgggttgactttagctatccacattgtggatat
tttctcccagactgttagtctttttttttttttttttttttctcaacagt
gttcttggatgaggggtttgatttacatcttgatgtgcccaatttatcaa
tacttttttaaatgttgattgctataagttttatatggtaaacttttgtc
ttcctcaggactgctaaatcccctcttgtgttttcttctttgctacttta
tttatgactttcacttttgttatgagatctgtgacctttgtccccttagt
tttatgtgacttggctccatcaccccatcaactgtccgtactgggagtct
tctcaggatggatggctaaaaaagcatctgtaaaggatttgtctttcttc
tactcatttttggtcatgattgctcccacaaggcatttcccatcacattc
ccaggtgatgaccctgggcttaatttagtgtctattctctagatcatttt
gattgttgatttacatattttcttaatatgtaaacttgataagaagaaca
cagagtatactcttttaacttttattccactctgatacctgactcagagg
tccacctttcacacagaaactatcacttagttgaattgcatcattgtttt
tgggagaactgattctgagttaggatttcaaacctgctgcttacaatttt
ttctatttttagattctacctgaagaggagcccaaagggagattatttta
aactatattttaaaagtagactattctttgtacttttaaagttcttttaa
agatgtttatttaaaataatttttatttatatgttattatttggaattca
ttttcactttattatcatgagaccattaacattgttaaagttgcagccaa
aactgttgttttttcaccttagttaatatccaataaacatttgactattt
tatgcctaaaacaactacttttctgcgtaaatagagcagcatataactac
tatatttgctaggttcttggcacatggaggaggtgtagatttaatttttt
tgatatttaatagattgatgatttattccaagaaggacttatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76130540_76131425
seq2: B6Ng01-155J15.b_45_931

seq1  GAATTCAAGATTATTTCCCTTAGTGAAATCTTAGTAAAAGATTAGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATTATTTCCCTTAGTGAAATCTTAGTAAAAGATTAGTGAAA  50

seq1  AGCTTACGTAGGGAAATCTTAATAAATATGTATTTTTACTTTTTTATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACGTAGGGAAATCTTAATAAATATGTATTTTTACTTTTTTATTAA  100

seq1  AAGTACAGCAACATTGCCTAACTACATTACTATTTTTGAAGTAGGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAGCAACATTGCCTAACTACATTACTATTTTTGAAGTAGGAATCT  150

seq1  ATTTATCTATTGAAATTTAGTAATGTTTTGGATGGTGACTACATAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCTATTGAAATTTAGTAATGTTTTGGATGGTGACTACATAAGAAA  200

seq1  GACAGTGAACAACAAAAGCTTTTTTCATATTCTTACTCGGGCTCAGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGAACAACAAAAGCTTTTTTCATATTCTTACTCGGGCTCAGAGTG  250

seq1  AATGGTGCTGGAGAGTTTTCAATTCTATATGTAATTATATTGTCTTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGCTGGAGAGTTTTCAATTCTATATGTAATTATATTGTCTTCAGA  300

seq1  ATTGACTATGAAATTTGAAAACAGGTGTTTAGTGGAACATTTAAGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTATGAAATTTGAAAACAGGTGTTTAGTGGAACATTTAAGTGACA  350

seq1  GAGTTATAAATCCTGCCTCCTTTACAAACACACAAGCATACAATTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATAAATCCTGCCTCCTTTACAAACACACAAGCATACAATTCTGTC  400

seq1  TTTATTCCATACTAATGTCTAAGACTGAATGAAAAAAAATTTTTCCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCATACTAATGTCTAAGACTGAATGAAAAAAAATTTTTCCAAAG  450

seq1  AAAAATGTAAGAATTTATCAAAAAAGAAAACCTGCCATCCATGTAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTAAGAATTTATCAAAAAAGAAAACCTGCCATCCATGTAAAAAA  500

seq1  AAAAAAAAAATTTCAAAAATAGAAAAACAGAACCTGATTTCCCAAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATTTCAAAAATAGAAAAACAGAACCTGATTTCCCAAAGTTG  550

seq1  GTAGGCTCTGAGGAGATCTGATCTCAATGTGTGTGCATGTTCCTTAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTCTGAGGAGATCTGATCTCAATGTGTGTGCATGTTCCTTAGAAT  600

seq1  AGTGTGGCACCCGACAGCCTGAAGAAAGGCTCACAAAAACATGTCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGCACCCGACAGCCTGAAGAAAGGCTCACAAAAACATGTCTTTCT  650

seq1  ATGTGATGAAAAACTACATAAAAATGTTTAGGATGATAGTAAAATAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGAAAAACTACATAAAAATGTTTAGGATGATAGTAAAATAAGGG  700

seq1  TGTGTCAATATTCCTTAAATAAGAGGAGTATTAATTTCAGAAAGTGGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAATATTCCTTAAATAAGAGGAGTATTAATTTCAGAAAGTGGGTC  750

seq1  AGAGGAGAGCAGAAAAGTGAACGGTGAGAAATCCATCCTAGTAGCAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGCAGAAAAGTGAACGGTGAGAAATCCATCCTAGTAGCAGGCT  800

seq1  TCTCGTGGCACACTCTACCTTTTTTATCAATTGTTGAATAATTAACAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTGGCACACTCTACCTTTTTTATCAATTGTTGAATAATTAACAGTC  850

seq1  GCATAGAAGCAGTGGGAGGGAGGGT-GGGATAGGGGG  886
      ||||||||||||||||||||||||| |||||||||||
seq2  GCATAGAAGCAGTGGGAGGGAGGGTGGGGATAGGGGG  887

seq1: chr12_76255740_76256858
seq2: B6Ng01-155J15.g_64_1159 (reverse)

seq1  AAACATTAAAGAGTCCTCTTTGGAAATAAAATCATTCAAAATCTATTAAA  50
      ||||||     ||||||  ||||||   |||||||    |||||||||||
seq2  AAACAT----AAGTCCTTCTTGGAA--TAAATCAT---CAATCTATTAAA  41

seq1  TATCAAAAAAATATTAAAATCTATCACTTCTCCATGTGACATAGAACCTA  100
      |||||||||||   | |||||||   || ||||||||| || ||||||||
seq2  TATCAAAAAAA---TTAAATCTACACCTCCTCCATGTGCCA-AGAACCTA  87

seq1  GCAAATATATGTAGTTTATATTGCTGCTCTATTTTACGCAGAAAAGTAGG  150
      ||||||||| |||| ||||| |||||||||| ||||||||||||||||| 
seq2  GCAAATATA-GTAG-TTATA-TGCTGCTCTA-TTTACGCAGAAAAGTAG-  132

seq1  TTTGTTTTAGGCATAAAATTAGTTCAAAATGTATATTTGGATATTAACTA  200
       ||||||||||||||||| ||||   |||||| || ||||||||||||||
seq2  -TTGTTTTAGGCATAAAA-TAGT--CAAATGTTTA-TTGGATATTAACTA  177

seq1  AGGTTGAAAAAACAACAGTTTTTGGCTGCAACTTTAACAATGTTAATGGT  250
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGG-TGAAAAAACAACAG-TTTTGGCTGCAACTTTAACAATGTTAATGGT  225

seq1  CTCATGATAATAAAGTGAAAATGAATT-CAAATAATAACATATAAATAAA  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCATGATAATAAAGTGAAAATGAATTCCAAATAATAACATATAAATAAA  275

seq1  AATTATTTTAAATAAACATCTTTAAAAGAACTTTAAAAGTACAAAGAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTAAATAAACATCTTTAAAAGAACTTTAAAAGTACAAAGAATA  325

seq1  GTCTACTTTTAAAATATAGTTTAAAATAATCT-CCTTTGGGCTCCTCTTC  398
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCTACTTTTAAAATATAGTTTAAAATAATCTCCCTTTGGGCTCCTCTTC  375

seq1  AGGTAGAATCTAAAAATAGAAAAAATTGTAAGCAGCAGGTTTGAAATCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAATCTAAAAATAGAAAAAATTGTAAGCAGCAGGTTTGAAATCCT  425

seq1  AACTCAGAATCAGTTCTCCCAAAAACAATGATGCAATTCAACTAAGTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAATCAGTTCTCCCAAAAACAATGATGCAATTCAACTAAGTGAT  475

seq1  AGTTTCTGTGTGAAAGGTGGACCTCTGAGTCAGGTATCAGAGTGGAATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGTGTGAAAGGTGGACCTCTGAGTCAGGTATCAGAGTGGAATAA  525

seq1  AAGTTAAAAGAGTATACTCTGTGTTCTTCTTATCAAGTTTACATATTAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAAGAGTATACTCTGTGTTCTTCTTATCAAGTTTACATATTAAG  575

seq1  AAAATATGTAAATCAACAATCAAAATGATCTAGAGAATAGACACTAAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTAAATCAACAATCAAAATGATCTAGAGAATAGACACTAAATT  625

seq1  AAGCCCAGGGTCATCACCTGGGAATGTGATGGGAAATGCCTTGTGGGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGGGTCATCACCTGGGAATGTGATGGGAAATGCCTTGTGGGAGC  675

seq1  AATCATGACCAAAAATGAGTAGAAGAAAGACAAATCCTTTACAGATGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGACCAAAAATGAGTAGAAGAAAGACAAATCCTTTACAGATGCTT  725

seq1  TTTTAGCCATCCATCCTGAGAAGACTCCCAGTACGGACAGTTGATGGGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCCATCCATCCTGAGAAGACTCCCAGTACGGACAGTTGATGGGGT  775

seq1  GATGGAGCCAAGTCACATAAAACTAAGGGGACAAAGGTCACAGATCTCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCCAAGTCACATAAAACTAAGGGGACAAAGGTCACAGATCTCAT  825

seq1  AACAAAAGTGAAAGTCATAAATAAAGTAGCAAAGAAGAAAACACAAGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGTGAAAGTCATAAATAAAGTAGCAAAGAAGAAAACACAAGAGG  875

seq1  GGATTTAGCAGTCCTGAGGAAGACAAAAGTTTACCATATAAAACTTATAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAGCAGTCCTGAGGAAGACAAAAGTTTACCATATAAAACTTATAG  925

seq1  CAATCAACATTTAAAAAAGTATTGATAAATTGGGCACATCAAGATGTAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAACATTTAAAAAAGTATTGATAAATTGGGCACATCAAGATGTAAA  975

seq1  TCAAACCCCTCATCCAAGAACACTGTTGAGAAAAAAAAAAAAAAAAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCCTCATCCAAGAACACTGTTGAGAAAAAAAAAAAAAAAAAAAA  1025

seq1  AGACTAACAGTCTGGGAGAAAATATCCACAATGTGGATAGCTAAAGTCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAACAGTCTGGGAGAAAATATCCACAATGTGGATAGCTAAAGTCAA  1075

seq1  CCCAGAATATATAGAGAATTC  1119
      |||||||||||||||||||||
seq2  CCCAGAATATATAGAGAATTC  1096