BAC Information

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BAC

Clone NameB6Ng01-155J17
Chromosome12 (Build37)
Map Location 85,951,976 - 86,087,629
singlet/doubletdoublet
Overlap geneAbcd4, 7420416P09Rik, Tmem90a
Upstream geneLOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10
Downstream geneNpc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155J17.bB6Ng01-155J17.g
ACCDH950343DH950344
length1,1471,069
definitionDH950343|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J17, 5' end.DH950344|Mus musculus domesticus DNA, BAC clone: B6Ng01-155J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,086,461 - 86,087,629)(85,951,976 - 85,953,040)
sequence
gaattcctgggatctaagtagataacatacctgcagataaaatctgtggg
agatacccaagcagcaaagccacggggaccaggaagagaaagcaggagga
gcaggaggtgtatggggaggcctgcgggaggggccttcttttcctctcct
aatccccaagtcaacaaaggatctaacctgagaggctcctggagatagga
gagtggtcactgagcctggctctctgcaggggacaggaggaagaagccct
gttaactctgttaactcccccaacatcctttctcagggtccctggctgct
gtcactccctccccccaagctccccactttgtgtgctacctgagcacaac
ctcgacaactttcagcagctctgtattacagatccacagccaccgtgcct
cctgttcctcccgggaggaaggagagaaagcaaacctctattcagttacc
agagaacaagacccgtaagcaacatgtagggagctaagaaatcgggatag
caaaagcccgccaaaaaaaaaaaaaacaaaaaaaacaaaaaacaaaacaa
aacaaaaaaacaaaaacaaaaaaaaccgccaataggcaaaataaacaaat
gaaaagaaactaagaagaaagatctgggtgtggtgagatatgtctgcaat
gccagtagggtcaggaattcaaagttatccttggctacgcaacaacctca
ggctcaaaaagcaaaaggctggagagagggctcaacagctaaaatcactc
gccactcttgtagaggacctgagtcctgtgtccagggcacacatgactca
ctcactgcctgtaactccagctccaggaatccaacacttgaagagatgct
taggcaagaggttgcaatgaatctgagaccaatcttgactacacagtgag
ttccggtccagtttgaactatggaataagaccttgtctcaaaaataaata
ataagggagctggagagatggctcagcgtgagagcactgtctgcactttc
agagatcctgagtttaattccagcaacaatggtgctcacaccatggtgta
tgagatctgatgctcttctggtggtgctggagacagcgacaggtgtctca
cgtaattatataaataagtcctaaaaataataagcacccctctttgt
gaattcactatgtagatcaggctggccttgaactcacggagatctgcctg
tttctgtctccttacctgcctactatagatgtgagccaccatgtctacct
gctcatctcaaactctcagtgatcccaatgaggaagtgactgctaactgc
agttgagactgacagagggcaaaagatctaaggctattcaattcgcccca
tacacaggtaatccaagggacaattcaacttcttaaatacagcctgtgct
tccagcccaaacaggcacaccaggacctgccctggtccaggagggaagag
atgtcacaaacactgcctgcaagaagccaggtctttggctccagcaaatg
tggggagcagatgtgagaagcctatctccccacaccccctatgctacaga
gacaaaaagaagccatttcagacaggaaaagagtctaaggcaactcctcc
atcaagatgaagtcacccactcattttaattccatggccattttaggccc
tatagttagaccaccaagactaaggaagtcaccagctccagaagcagtcc
ccatacctaaggacagggagaagggttgggagagggtcacagctaagtgt
gacaagctctatagggccacaatagtagtaggcttttatctttcctttcc
acccctaactgtggggagaacgagacttttctccactagactcacctata
gaaagccgcaggctctgcattcactcgaatctgcatgtgcttgaacctgc
acagatggaagggaaaatatgtgctaacaatggggaaccgtggaagcaga
ggaaacccactcccatacaacacagagcccagctccatgtcgtctacgct
gtggccgcctttctcttgggctgtcacgagatgaacgccccatgggctcg
ggtgtggcagcagaagctgtactaacagtgctgacctcagctttttggga
ttggggagaggagtaggcttgactatgggactccttcaccagagcccagc
ttaacaaggcaagaagcactaggcagtgcaagatgtggtaagctgcttgg
ctctggcagacagggcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86086461_86087629
seq2: B6Ng01-155J17.b_51_1197 (reverse)

seq1  ACAAAGA-GGGTGCTTTTATTTTATTTTTTTTAAGATTTATTTATTTATT  49
      ||||||| ||||||       ||||| |||||| || |||||||| || |
seq2  ACAAAGAGGGGTGC-------TTATTATTTTTAGGACTTATTTATATAAT  43

seq1  TAATGTACGTGAGTACA-CTGTCGCTGTCTCCAGACACACCAGAAGAGGG  98
           |||||||| ||| ||||||||||||||||   ||||||||||  |
seq2  -----TACGTGAG-ACACCTGTCGCTGTCTCCAGCACCACCAGAAGA--G  85

seq1  CATCAGATCTCATTACA-CATGGTTGTGAGCCACCATGTGGTTGCTGGAA  147
      |||||||||||| |||| ||||| |||||| |||||  | |||||||| |
seq2  CATCAGATCTCA-TACACCATGG-TGTGAG-CACCA--TTGTTGCTGG-A  129

seq1  ATTAAACTCAGGATCTCTGGAAGTGCAGACAGTGCTCTTCACCGCTGAGC  197
      ||||||||||||||||||| ||||||||||||||||| ||| ||||||||
seq2  ATTAAACTCAGGATCTCTGAAAGTGCAGACAGTGCTC-TCA-CGCTGAGC  177

seq1  CATCTCTCCAGCTCCCTTATTATTTATTTTTTGAGACAAGGTCTTATTCC  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATCTCTCCAGCTCCCTTATTATTTA-TTTTTGAGACAAGGTCTTATTCC  226

seq1  ATAGTTCAAACTGGACCGGAACTCACTGTGTAGTCAAGATTGGTCTCAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCAAACTGGACCGGAACTCACTGTGTAGTCAAGATTGGTCTCAGA  276

seq1  TTCATTGCAAACCTCTTGCCTAAGCATCTCTTCAAGTGTTGGATTCCTGG  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGC-AACCTCTTGCCTAAGCATCTCTTCAAGTGTTGGATTCCTGG  325

seq1  AGCTGGAGTTACAGGCAGTGAGTGAGTCATGTGTGCCCTGGACACAGGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGTTACAGGCAGTGAGTGAGTCATGTGTGCCCTGGACACAGGAC  375

seq1  TCAGGTCCTCTACAAGAGTGGCGAGTGATTTTAGCTGTTGAGCCCTCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCTCTACAAGAGTGGCGAGTGATTTTAGCTGTTGAGCCCTCTCT  425

seq1  CCAGCCTTTTGCTTTTTGAGCCTGAGGTTGTTGCGTAGCCAAGGATAACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTTTGCTTTTTGAGCCTGAGGTTGTTGCGTAGCCAAGGATAACT  475

seq1  TTGAATTCCTGACCCTACTGGCATTGCAGACATATCTCACCACACCCAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCCTGACCCTACTGGCATTGCAGACATATCTCACCACACCCAGA  525

seq1  TCTTTCTTCTTAGTTTCTTTTCATTTGTTTATTTTGCCTATTGGCGGTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCTTAGTTTCTTTTCATTTGTTTATTTTGCCTATTGGCGGTTT  575

seq1  TTTTTGTTTTTGTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTTTTGTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTTTTGTTTT  625

seq1  TTTTTTTTTTGGCGGGCTTTTGCTATCCCGATTTCTTAGCTCCCTACATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGCGGGCTTTTGCTATCCCGATTTCTTAGCTCCCTACATG  675

seq1  TTGCTTACGGGTCTTGTTCTCTGGTAACTGAATAGAGGTTTGCTTTCTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTACGGGTCTTGTTCTCTGGTAACTGAATAGAGGTTTGCTTTCTCT  725

seq1  CCTTCCTCCCGGGAGGAACAGGAGGCACGGTGGCTGTGGATCTGTAATAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCCGGGAGGAACAGGAGGCACGGTGGCTGTGGATCTGTAATAC  775

seq1  AGAGCTGCTGAAAGTTGTCGAGGTTGTGCTCAGGTAGCACACAAAGTGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCTGAAAGTTGTCGAGGTTGTGCTCAGGTAGCACACAAAGTGGG  825

seq1  GAGCTTGGGGGGAGGGAGTGACAGCAGCCAGGGACCCTGAGAAAGGATGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGGGGGAGGGAGTGACAGCAGCCAGGGACCCTGAGAAAGGATGT  875

seq1  TGGGGGAGTTAACAGAGTTAACAGGGCTTCTTCCTCCTGTCCCCTGCAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGTTAACAGAGTTAACAGGGCTTCTTCCTCCTGTCCCCTGCAGA  925

seq1  GAGCCAGGCTCAGTGACCACTCTCCTATCTCCAGGAGCCTCTCAGGTTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGCTCAGTGACCACTCTCCTATCTCCAGGAGCCTCTCAGGTTAG  975

seq1  ATCCTTTGTTGACTTGGGGATTAGGAGAGGAAAAGAAGGCCCCTCCCGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTGTTGACTTGGGGATTAGGAGAGGAAAAGAAGGCCCCTCCCGCA  1025

seq1  GGCCTCCCCATACACCTCCTGCTCCTCCTGCTTTCTCTTCCTGGTCCCCG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCCCATACACCTCCTGCTCCTCCTGCTTTCTCTTCCTGGTCCCCG  1075

seq1  TGGCTTTGCTGCTTGGGTATCTCCCACAGATTTTATCTGCAGGTATGTTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGCTGCTTGGGTATCTCCCACAGATTTTATCTGCAGGTATGTTA  1125

seq1  TCTACTTAGATCCCAGGAATTC  1169
      ||||||||||||||||||||||
seq2  TCTACTTAGATCCCAGGAATTC  1147

seq1: chr12_85951976_85953040
seq2: B6Ng01-155J17.g_66_1134

seq1  GAATTCACTATGTAGATCAGGCTGGCCTTGAACTCACGGAGATCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGATCAGGCTGGCCTTGAACTCACGGAGATCTGCCTG  50

seq1  TTTCTGTCTCCTTACCTGCCTACTATAGATGTGAGCCACCATGTCTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCCTTACCTGCCTACTATAGATGTGAGCCACCATGTCTACCT  100

seq1  GCTCATCTCAAACTCTCAGTGATCCCAATGAGGAAGTGACTGCTAACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCTCAAACTCTCAGTGATCCCAATGAGGAAGTGACTGCTAACTGC  150

seq1  AGTTGAGACTGACAGAGGGCAAAAGATCTAAGGCTATTCAATTCGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGACTGACAGAGGGCAAAAGATCTAAGGCTATTCAATTCGCCCCA  200

seq1  TACACAGGTAATCCAAGGGACAATTCAACTTCTTAAATACAGCCTGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGTAATCCAAGGGACAATTCAACTTCTTAAATACAGCCTGTGCT  250

seq1  TCCAGCCCAAACAGGCACACCAGGACCTGCCCTGGTCCAGGAGGGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCAAACAGGCACACCAGGACCTGCCCTGGTCCAGGAGGGAAGAG  300

seq1  ATGTCACAAACACTGCCTGCAAGAAGCCAGGTCTTTGGCTCCAGCAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAAACACTGCCTGCAAGAAGCCAGGTCTTTGGCTCCAGCAAATG  350

seq1  TGGGGAGCAGATGTGAGAAGCCTATCTCCCCACACCCCCTATGCTACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGCAGATGTGAGAAGCCTATCTCCCCACACCCCCTATGCTACAGA  400

seq1  GACAAAAAGAAGCCATTTCAGACAGGAAAAGAGTCTAAGGCAACTCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAGAAGCCATTTCAGACAGGAAAAGAGTCTAAGGCAACTCCTCC  450

seq1  ATCAAGATGAAGTCACCCACTCATTTTAATTCCATGGCCATTTTAGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATGAAGTCACCCACTCATTTTAATTCCATGGCCATTTTAGGCCC  500

seq1  TATAGTTAGACCACCAAGACTAAGGAAGTCACCAGCTCCAGAAGCAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTAGACCACCAAGACTAAGGAAGTCACCAGCTCCAGAAGCAGTCC  550

seq1  CCATACCTAAGGACAGGGAGAAGGGTTGGGAGAGGGTCACAGCTAAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTAAGGACAGGGAGAAGGGTTGGGAGAGGGTCACAGCTAAGTGT  600

seq1  GACAAGCTCTATAGGGCCACAATAGTAGTAGGCTTTTATCTTTCCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCTCTATAGGGCCACAATAGTAGTAGGCTTTTATCTTTCCTTTCC  650

seq1  ACCCCTAACTGTGGGGAGAACGAGACTTTTCTCCACTAGACTCACCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAACTGTGGGGAGAACGAGACTTTTCTCCACTAGACTCACCTATA  700

seq1  GAAAGCCGCAGGCTCTGCATTCACTCGAATCTGCATGTGCTTGAACCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCGCAGGCTCTGCATTCACTCGAATCTGCATGTGCTTGAACCTGC  750

seq1  ACAGATGGAAGGG-AAATATGTGCTAACAATGGGGAACCGTGGAAGCAGA  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGAAGGGAAAATATGTGCTAACAATGGGGAACCGTGGAAGCAGA  800

seq1  GGAAACCCACTCCCATACAACACAGAGCCCAGCTCCATGTCGTCTACGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCACTCCCATACAACACAGAGCCCAGCTCCATGTCGTCTACGCT  850

seq1  GTGGCCGCCTTTC-CCTGGGCTGTCACGAGATGAACGCCCCA-GGGCTCG  897
      ||||||||||||| | |||||||||||||||||||||||||| |||||||
seq2  GTGGCCGCCTTTCTCTTGGGCTGTCACGAGATGAACGCCCCATGGGCTCG  900

seq1  GGTGTGGCAGCAGAAGCTGTACTAACAGTGCTGACCTCAGCTTTTTGGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCAGCAGAAGCTGTACTAACAGTGCTGACCTCAGCTTTTTGGGA  950

seq1  T--GGGAGAGGAGTAGGCTTGACTATGGGACCTCCTCACCAGAGCCCAGC  995
      |  ||||||||||||||||||||||||||||  | |||||||||||||||
seq2  TTGGGGAGAGGAGTAGGCTTGACTATGGGACTCCTTCACCAGAGCCCAGC  1000

seq1  TTAACCAAGGCAGGAAGCACAGGGCAGGTGCAGAATGTGGGTCAGCTGC-  1044
      |||| ||||||| |||||||  |||| |||||  |||| ||| |||||| 
seq2  TTAA-CAAGGCAAGAAGCACTAGGCA-GTGCAAGATGT-GGTAAGCTGCT  1047

seq1  TGGC-CCGGCAGACAGGGCACT  1065
      |||| | |||||||||||||||
seq2  TGGCTCTGGCAGACAGGGCACT  1069