BAC Information

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BAC

Clone NameB6Ng01-156E11
Chromosome12 (Build37)
Map Location 57,907,964 - 58,051,707
singlet/doubletdoublet
Overlap geneSlc25a21
Upstream geneGarnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156E11.bB6Ng01-156E11.g
ACCDH950825DH950826
length851860
definitionDH950825|Mus musculus domesticus DNA, BAC clone: B6Ng01-156E11, 5' end.DH950826|Mus musculus domesticus DNA, BAC clone: B6Ng01-156E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,907,964 - 57,908,816)(58,051,017 - 58,051,707)
sequence
gaattccatgagttcaaggccaggctggtctacagagcccaggacagcca
gggttacgaagagaaaccctatctcaataaaacaaaagaaacaaaatgac
tgtattctatcgatcatgtagccatcgtgattttctgtctatctgttttg
ttgaacttttacactgatgcccacattatgcttcaatgtaaggctagtct
acttatcttccatatcaagtaaacctagtacaaagaccctccctacctgg
ggatcggaccttaggtgctgcacacaccccacactaactgctatgttagc
attccattctggtgaacagcaggtgaagacgtaagctgtcaagagccatt
caagagttagggcaagatttgttatctggcaattcatctgttctttcaca
taactactatacgtaaactttaatatgctttttaaaaaaattacccaatt
ctcttaattttccaacctgagcattaccccaataccacaaatgacttaca
gaaatgcaaacatcacacaggcaaaatacaaaataaatcactgacccaat
cttattttttacaattgtcatttttgggtgaaagccaagaatggatgttt
tgatggtgcttatgaatacgaagtgctcctccttccattgttactggaac
aaagatcacttgctatgaatggctcgagatatgtaaacacagctggtcca
atagtttgagtgacactgatgggaggagatgggcttaatggcaacccaag
gactcacatgcttttgtgtaaagaatctgagtccacactgtatctattcc
tgttttgtagacaaccttgagggcttctcagaagtctactctacttagat
g
gaattcacccatggaaaaacaatgtctgtgggaaatgtagacagttgtcc
taactgactgaatattttcttactaatataatttttgctgattctttttg
attttcacatcatgcaccccaatctcacccatttctcaattcctccatat
ccatgcttcacccaaaattaaaaaaaaaaaatctaactattttgtgtttg
gattttctaagaacaaaaacagagaaaatgtgaaaaaaaaaaaaaaaaaa
aaaagtcatcaaggaaaccaggttggaagccagatgtgagtggggagagc
tcacctgagcttcattccagtttgttctaaagctttgcttcctaatttag
caactgaccctttaatacagtccctcactttgtagggacccccaactgtc
aaattattttcattgctaattcacaactgtagtgttgttactattataaa
ctataatgggactatctgtgttttctgacaatcttaggtgactactgcaa
aaggggtagaaaccccaaagggatcactacccacaggttgaaaaatgcct
tcctagagaaaggttttgttttgttttgttttgttttaaaagaaaagaga
aatctgattttaaaaatgaaaaatcattcttaatattgaaaacaaactca
gtttgaaaagaacatccctggggtgctgggggggggggtggtttattcat
ttccatcacctgtttggccatgttttcctgcaattctttaagggattttt
gtgcttcctctttaatgtctcttcctgttagcagtgttctcctgtatttc
ttaagtgagttattaaagtccttcttgatgtcctctaccatcattatgag
atatgcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57907964_57908816
seq2: B6Ng01-156E11.b_43_893

seq1  GAATTCCATGAGTTCAAGGCCAGGCTGGTCTACAGAGCCCAGGACAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAGTTCAAGGCCAGGCTGGTCTACAGAGCCCAGGACAGCCA  50

seq1  GGGTTACAAAGAGAAACCCTATCTCAATAAAACAAAAGAAACAAAATGTC  100
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  GGGTTACGAAGAGAAACCCTATCTCAATAAAACAAAAGAAACAAAATGAC  100

seq1  TGTATTCTATCAATCATGTAGCCATCTTGATTTTCTGTCTATCTGTTTTG  150
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  TGTATTCTATCGATCATGTAGCCATCGTGATTTTCTGTCTATCTGTTTTG  150

seq1  TTGAACTTTTACACTGATGCCCACATTATGCTTCAATGTAAGGCTAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTTTACACTGATGCCCACATTATGCTTCAATGTAAGGCTAGTCT  200

seq1  ACTTATCTTCCATATCAAGTAAACCTAGTACAAAGACCCTCCCTACCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCTTCCATATCAAGTAAACCTAGTACAAAGACCCTCCCTACCTGG  250

seq1  GGATCAGACCTTAGGTGCTGCACACACCCCACACTAACTGCTATGTTAGC  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGGACCTTAGGTGCTGCACACACCCCACACTAACTGCTATGTTAGC  300

seq1  ATTCCATTCTGGTGAACAGCAGGTGAAGACGTAGGCTGTCAAGAGCCATT  350
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTCCATTCTGGTGAACAGCAGGTGAAGACGTAAGCTGTCAAGAGCCATT  350

seq1  CAAGAGTTAGTGCAAGATTTGTTATCTGGCAATTCATCTGTTCTTTCACA  400
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTAGGGCAAGATTTGTTATCTGGCAATTCATCTGTTCTTTCACA  400

seq1  TAACTACTATACGTAAACTTTAATATGCTTTTTAAAAAAATTACCCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACTATACGTAAACTTTAATATGCTTTTTAAAAAAATTACCCAATT  450

seq1  CTCTTAATTTTCCAACCTGAGCATTACCCCAATACCACAAATGACTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATTTTCCAACCTGAGCATTACCCCAATACCACAAATGACTTACA  500

seq1  GAAATGCAAACATCACACAGGCAAAATACAAAATAAATCACTGACCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAAACATCACACAGGCAAAATACAAAATAAATCACTGACCCAAT  550

seq1  CTTATTTTTTACAATTGTCATTTTTGGGTGAAAGCCAAGAATGGATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTTACAATTGTCATTTTTGGGTGAAAGCCAAGAATGGATGTTT  600

seq1  TGATGGTGCTTATGAATACGAAGTGCTCCTCCTTCCATTGTTACTGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGCTTATGAATACGAAGTGCTCCTCCTTCCATTGTTACTGGAAC  650

seq1  AAAGATCACTTGCTTTGAATGGCTCGAGATATGTAAACACAGCTGGTCCA  700
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGATCACTTGCTATGAATGGCTCGAGATATGTAAACACAGCTGGTCCA  700

seq1  ATAGTTTGAGTGACACTGATGGGAGGAGATGGGCTTAAGGGCAACCCAGG  750
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  ATAGTTTGAGTGACACTGATGGGAGGAGATGGGCTTAATGGCAACCCAAG  750

seq1  GACTCACATGCTTTTGTGTAAAAGAATCTGAGTCCACACTGTATCTATTC  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACTCACATGCTTTTGTGT-AAAGAATCTGAGTCCACACTGTATCTATTC  799

seq1  CTGTTTGTGAAGACAACCTTGAGGGCTTCTCAGAAGTCTACTCTACTTAG  850
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTT-TGTAGACAACCTTGAGGGCTTCTCAGAAGTCTACTCTACTTAG  848

seq1  ATG  853
      |||
seq2  ATG  851

seq1: chr12_58051017_58051707
seq2: B6Ng01-156E11.g_67_757 (reverse)

seq1  CCACCCCCCCCCCCAGCACCCCAGGGATGTTCTTTTCAAACTGAGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCCCCCCAGCACCCCAGGGATGTTCTTTTCAAACTGAGTTTGT  50

seq1  TTTCAATATTAAGAATGATTTTTCATTTTTAAAATCAGATTTCTCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTAAGAATGATTTTTCATTTTTAAAATCAGATTTCTCTTTTC  100

seq1  TTTTAAAACAAAACAAAACAAAACAAAACCTTTCTCTAGGAAGGCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACAAAACAAAACAAAACAAAACCTTTCTCTAGGAAGGCATTTT  150

seq1  TCAACCTGTGGGTAGTGATCCCTTTGGGGTTTCTAACCCTTTTGCAGTAG  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAACCTGTGGGTAGTGATCCCTTTGGGGTTTCTACCCCTTTTGCAGTAG  200

seq1  TCACCTAAGATTGTCAGAAAACACAGATAGTCACATTATAGTTTATAATA  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCACCTAAGATTGTCAGAAAACACAGATAGTCCCATTATAGTTTATAATA  250

seq1  GTAACAACACTACAGTTGTGAATTAGCAATGAAAATAATTTGACAGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAACACTACAGTTGTGAATTAGCAATGAAAATAATTTGACAGTTGG  300

seq1  GGGTCACTACAAAGTGAGGGACTGTATTAAAGGGTCAGTTGCTAAATTAG  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCTACAAAGTGAGGGACTGTATTAAAGGGTCAGTTGCTAAATTAG  350

seq1  GAAGCAAAGCTCTAGAACAAACTGGAATGAAGCTCAGGTGAGCTCTCCCC  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAGCTTTAGAACAAACTGGAATGAAGCTCAGGTGAGCTCTCCCC  400

seq1  ACTCACATCTGGCTTCCAACCTGGTTTCCTTGATGACTTTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATCTGGCTTCCAACCTGGTTTCCTTGATGACTTTTTTTTTTTTT  450

seq1  TTTTTTTTTTACATTTTCTCTGTTTTTGTTCTTAGAAAATCCAAACACAA  500
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCACATTTTCTCTGTTTTTGTTCTTAGAAAATCCAAACACAA  500

seq1  AATAGTTAGATTTTTTTTTTTTAATTTTGGGTGAAGCATGGATATGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTAGATTTTTTTTTTTTAATTTTGGGTGAAGCATGGATATGGAGG  550

seq1  AATTGAGAAATGGGTGAGATTGGGGTGCATGATGTGAAAATCAAAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAAATGGGTGAGATTGGGGTGCATGATGTGAAAATCAAAAAGAA  600

seq1  TCAGCAAAAATTATATTAGTAAGAAAATATTCAGTCAGTTAGGACAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAAAATTATATTAGTAAGAAAATATTCAGTCAGTTAGGACAACTG  650

seq1  TCTACATTTCCCACAGACATTGTTTTTCCATGGGTGAATTC  691
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTTCCCACAGACATTGTTTTTCCATGGGTGAATTC  691