BAC Information

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BAC

Clone NameB6Ng01-156I13
Chromosome12 (Build37)
Map Location 93,412,918 - 93,528,239
singlet/doubletdoublet
Overlap geneLOC100039425, LOC628116
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156I13.bB6Ng01-156I13.g
ACCDH951014DH951015
length1,0401,054
definitionDH951014|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I13, 5' end.DH951015|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,527,186 - 93,528,239)(93,412,918 - 93,413,976)
sequence
gaattctttattcttgactgttcaacacattttcaatgctgaaaagtgaa
gaagactgcttcaattaaacagttaaaaattgtaaaaaaaaaaaaaaaaa
aaaaaaaacctttgctaaaaacacaatagacattatcaataaaatgcttg
gatgctgttaacagcaaataataaaacatccatgtccttattgctttttg
atcacaacagatacattaagtgtgagaaaattaaagaaaggcaatgtact
cccaaagactaagacactctaatgtactcttcagaaagatatgaaggaca
ctaaataagatagatccttcaaagaaaaattcctatttcctaatagttca
ttcaggtatgaactcatcaatagattgatccattaataaaattaataatc
ccatgtgtgatgatctgtatatgcttggcccacagagctaaattattatg
gccttgttggagtaggtatgtcactgtgggtgtgggcttaagatccttat
cctagctgcctggaaatcaatatttggttagcagccttcagataaaaatg
tagaactcttagctcctcctgcaccatgcctgtctagatgctgccatgtt
cccaccttgatgatactggactaaatctctgaacctgtaagccagcccca
gttaaatgatgtcctttataagacttgccttggtcatggtatctgttcac
agcagcaaaactgtaactaagacaccaagatacaatgactattctgtcac
tagcaactgagaaataagacttcagcacatgagcctttgagaccatatta
tatttaaatcataaaaatatatatttaaaatggaaagttttaacctgggc
tcataggagttcacagagacagaactgccaaccagtgagcatgcatggga
ctgatctacgtcctctgcacatgtgtaacagttgtgtagtttgtcttctt
gtggttctctaacaacaggagcagagctctctgacttgtgctgatttagg
accttctctactgtgctgtctatctaacattaatagtaga
gaattcagtgactccttgctatacaggatgctctacctaggacacaatat
aaaataccaagagggaggcagctatgaatcatccaagctgacattgattt
ccagtttgttatgtgtcagacacaggactgagcatattgcaagcaggatc
tcactttattctcaaaacagttttgaggggacagaacaattattatcccc
actaaactgatgaagataattaagcctagtgacaataacttgcctaagga
cacactagaaatggcagatctgaggcctgatgcagaagccaattccctta
accaatgcacagttttggtctttaatgagtgaacctagtaatctaattgt
tccacttttattctcataaaggcaataagacacataaatactgaatttat
aagacaaaatgggataaatggtgcacaaaaggaatgagatcatcggcatt
aatggagaatgcaatctagacaggatttaagccccaataattagcataca
atatgagcacctactgagtgtgtactttcagtcaactgttcttcctccac
ctatttacccattcataaaatattcactgagtagcagctactcttatact
tttcccagtatgtagggccactaaaaaaataaaataaaataaaatagata
aatataccagccttttggaatcttgcattctagaagagtcagagaagcag
gaaggaaaaaaaaattatcgatatgtactttgtacacaaagcacacatgt
tcacacggtttttttttctttttaaaggcatggaatgtactataaataaa
agaataaaacttgaaaggtgcaatagggtaataaatgcagcaaccttgag
ttaggattgactgaaccttttcatttgatctactctacagtatctgagtc
taggagtgcctgctatttcaggtcctcttttttacaagaaaactaattta
gagtgactagttactttgttctagaaggaaatggagtcttctctgacata
gagtttcttaggattgtttctgatgccgattgtgactagtcctaaaataa
ttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93527186_93528239
seq2: B6Ng01-156I13.b_45_1084 (reverse)

seq1  TCTACTATTAATGTTAGATTAGACAGCACAGTAGGAGAAAAGGTTCCTAA  50
      |||||||||||||||||| |||||||||||||| |||||   | |||| |
seq2  TCTACTATTAATGTTAGA-TAGACAGCACAGTA-GAGAA---GGTCCT-A  44

seq1  AATCAGGCAACCAAGTCAGAGAAGGCTCCTGCTCCTGTTGTTAGGAGAAC  100
      ||||| |||  |||||||||||  ||| ||||||||||||||| ||||||
seq2  AATCA-GCA--CAAGTCAGAGA--GCT-CTGCTCCTGTTGTTA-GAGAAC  87

seq1  CACAAGAAGACCAAACTACACAACTGTTACACATGTGCAGAGGACGTAGA  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAGA-CAAACTACACAACTGTTACACATGTGCAGAGGACGTAGA  136

seq1  TCAGTCCCATGCATGCTCACTGGTTGGCAGTTCTGTCTCTGTGAACTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCATGCATGCTCACTGGTTGGCAGTTCTGTCTCTGTGAACTCCT  186

seq1  ATGAGCCCAGGTTAAAACTTTCCATTTTAAATATATATTTTTATGATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCCAGGTTAAAACTTTCCATTTTAAATATATATTTTTATGATTTA  236

seq1  AATATAATATGGTCTCAAAGGCTCATGTGCTGAAGTCTTATTTCTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATATGGTCTCAAAGGCTCATGTGCTGAAGTCTTATTTCTCAGTT  286

seq1  GCTAGTGACAGAATAGTCATTGTATCTTGGTGTCTTAGTTACAGTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGACAGAATAGTCATTGTATCTTGGTGTCTTAGTTACAGTTTTGC  336

seq1  TGCTGTGAACAGATACCATGACCAAGGCAAGTCTTATAAAGGACATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAACAGATACCATGACCAAGGCAAGTCTTATAAAGGACATCATT  386

seq1  TAACTGGGGCTGGCTTACAGGTTCAGAGATTTAGTCCAGTATCATCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGGCTGGCTTACAGGTTCAGAGATTTAGTCCAGTATCATCAAGG  436

seq1  TGGGAACATGGCAGCATCTAGACAGGCATGGTGCAGGAGGAGCTAAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACATGGCAGCATCTAGACAGGCATGGTGCAGGAGGAGCTAAGAGT  486

seq1  TCTACATTTTTATCTGAAGGCTGCTAACCAAATATTGATTTCCAGGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTTTTATCTGAAGGCTGCTAACCAAATATTGATTTCCAGGCAGC  536

seq1  TAGGATAAGGATCTTAAGCCCACACCCACAGTGACATACCTACTCCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAAGGATCTTAAGCCCACACCCACAGTGACATACCTACTCCAACA  586

seq1  AGGCCATAATAATTTAGCTCTGTGGGCCAAGCATATACAGATCATCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATAATAATTTAGCTCTGTGGGCCAAGCATATACAGATCATCACAC  636

seq1  ATGGGATTATTAATTTTATTAATGGATCAATCTATTGATGAGTTCATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTATTAATTTTATTAATGGATCAATCTATTGATGAGTTCATACC  686

seq1  TGAATGAACTATTAGGAAATAGGAATTTTTCTTTGAAGGATCTATCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAACTATTAGGAAATAGGAATTTTTCTTTGAAGGATCTATCTTAT  736

seq1  TTAGTGTCCTTCATATCTTTCTGAAGAGTACATTAGAGTGTCTTAGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTCCTTCATATCTTTCTGAAGAGTACATTAGAGTGTCTTAGTCTT  786

seq1  TGGGAGTACATTGCCTTTCTTTAATTTTCTCACACTTAATGTATCTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTACATTGCCTTTCTTTAATTTTCTCACACTTAATGTATCTGTTG  836

seq1  TGATCAAAAAGCAATAAGGACATGGATGTTTTATTATTTGCTGTTAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAAAAGCAATAAGGACATGGATGTTTTATTATTTGCTGTTAACAG  886

seq1  CATCCAAGCATTTTATTGATAATGTCTATTGTGTTTTTAGCAAAGGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGCATTTTATTGATAATGTCTATTGTGTTTTTAGCAAAGGTTTT  936

seq1  TTTTTTTTTTTTTTTTTTTTTACAATTTTTAACTGTTTAATTGAAGCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTACAATTTTTAACTGTTTAATTGAAGCAGT  986

seq1  CTTCTTCACTTTTCAGCATTGAAAATGTGTTGAACAGTCAAGAATAAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCACTTTTCAGCATTGAAAATGTGTTGAACAGTCAAGAATAAAGA  1036

seq1  ATTC  1054
      ||||
seq2  ATTC  1040

seq1: chr12_93412918_93413976
seq2: B6Ng01-156I13.g_69_1122

seq1  GAATTCAGTGACTCCTTGCTATACAGGATGCTCTACCTAGGACACAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGACTCCTTGCTATACAGGATGCTCTACCTAGGACACAATAT  50

seq1  AAAATACCAAGAGGGAGGCAGCTATGAATCATCCAAGCTGACATTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCAAGAGGGAGGCAGCTATGAATCATCCAAGCTGACATTGATTT  100

seq1  CCAGTTTGTTATGTGTCAGACACAGGACTGAGCATATTGCAAGCAGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGTTATGTGTCAGACACAGGACTGAGCATATTGCAAGCAGGATC  150

seq1  TCACTTTATTCTCAAAACAGTTTTGAGGGGACAGAACAATTATTATCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTATTCTCAAAACAGTTTTGAGGGGACAGAACAATTATTATCCCC  200

seq1  ACTAAACTGATGAAGATAATTAAGCCTAGTGACAATAACTTGCCTAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTGATGAAGATAATTAAGCCTAGTGACAATAACTTGCCTAAGGA  250

seq1  CACACTAGAAATGGCAGATCTGAGGCCTGATGCAGAAGCCAATTCCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGAAATGGCAGATCTGAGGCCTGATGCAGAAGCCAATTCCCTTA  300

seq1  ACCAATGCACAGTTTTGGTCTTTAATGAGTGAACCTAGTAATCTAATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCACAGTTTTGGTCTTTAATGAGTGAACCTAGTAATCTAATTGT  350

seq1  TCCACTTTTATTCTCATAAAGGCAATAAGACACATAAATACTGAATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTTATTCTCATAAAGGCAATAAGACACATAAATACTGAATTTAT  400

seq1  AAGACAAAATGGGATAAATGGTGCACAAAAGGAATGAGATCATCGGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAATGGGATAAATGGTGCACAAAAGGAATGAGATCATCGGCATT  450

seq1  AATGGAGAATGCAATCTAGACAGGATTTAAGCCCCAATAATTAGCATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAATGCAATCTAGACAGGATTTAAGCCCCAATAATTAGCATACA  500

seq1  ATATGAGCACCTACTGAGTGTGTACTTTCAGTCAACTGTTCTTCCTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGCACCTACTGAGTGTGTACTTTCAGTCAACTGTTCTTCCTCCAC  550

seq1  CTATTTACCCATTCATAAAATATTCACTGAGTAGCAGCTACTCTTATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACCCATTCATAAAATATTCACTGAGTAGCAGCTACTCTTATACT  600

seq1  TTTCCCAGTATGTAGGGCCACT-AAAAAATAAAATAAAATAAAATAGATA  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTCCCAGTATGTAGGGCCACTAAAAAAATAAAATAAAATAAAATAGATA  650

seq1  AATATACCAGCCTTTTGGAATCTTGCATTCTAGAAGAGTCAGAGAAGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCAGCCTTTTGGAATCTTGCATTCTAGAAGAGTCAGAGAAGCAG  700

seq1  GAAGGAAAAAAAAATTATCGATATGTACTTTGTACACAAAGCACACATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAAAAAATTATCGATATGTACTTTGTACACAAAGCACACATGT  750

seq1  TCACACGGTTTTTTTTTCTTTTTAAAGGCATGGAATGTACTATAAATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACGGTTTTTTTTTCTTTTTAAAGGCATGGAATGTACTATAAATAAA  800

seq1  AGAATAAAACTTGAAAGGTGCAATAGGTAATTAAATGCAGCAACCTTGAG  849
      |||||||||||||||||||||||||||  | |||||||||||||||||||
seq2  AGAATAAAACTTGAAAGGTGCAATAGGGTAATAAATGCAGCAACCTTGAG  850

seq1  TTAGGATTGACTGAACCTTTTCATTTGAATCTACTCTACAGTATCTGAGT  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAGGATTGACTGAACCTTTTCATTTG-ATCTACTCTACAGTATCTGAGT  899

seq1  TCTTAGGAGGTGCCTGCTATTTCAGTGTCCTCTTTTTTACAGGAAAACTA  949
         ||||| |||||||||||||||| ||||||||||||||| ||||||||
seq2  --CTAGGA-GTGCCTGCTATTTCAG-GTCCTCTTTTTTACAAGAAAACTA  945

seq1  ATTTAGAGTGACTAGCTACTTTGTTCTAGAAGGTAATGGAGTCTTCCTCT  999
      ||||||||||||||| ||||||||||||||||| ||||||||||| ||||
seq2  ATTTAGAGTGACTAGTTACTTTGTTCTAGAAGGAAATGGAGTCTT-CTCT  994

seq1  GACAATAGGAGTTTCTTAGGAATTGTTTCTGATGCAGA-TGTGACTAAGT  1048
      ||| ||| |||||||||||| |||||||||||||| || ||||||| |||
seq2  GAC-ATA-GAGTTTCTTAGG-ATTGTTTCTGATGCCGATTGTGACT-AGT  1040

seq1  CCTAGAATTAT---  1059
      |||| ||| ||   
seq2  CCTAAAATAATTAT  1054