BAC Information

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BAC

Clone NameB6Ng01-157D20
Chromosome12 (Build37)
Map Location 89,718,095 - 89,869,171
singlet/doubletdoublet
Overlap genenone
Upstream geneSptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Downstream geneLOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157D20.bB6Ng01-157D20.g
ACCDH951529DH951530
length1,141990
definitionDH951529|Mus musculus domesticus DNA, BAC clone: B6Ng01-157D20, 5' end.DH951530|Mus musculus domesticus DNA, BAC clone: B6Ng01-157D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,868,026 - 89,869,171)(89,718,095 - 89,719,061)
sequence
gaattccctgagaccttgtgcagagctgggaaagggtgagaaaggggggg
aggggaaagcccataactgatccatgatatagttacacttcagctttatc
cagaggcaggggaaagccctagtgatttgtcagtcacctggcagatggac
tacctgagtcagtggtcaactggaggtgcctgacctacaatattggttca
ttctcaagccaacaaggcaagcacagggttctctaccagacagacacccg
aatagtaggaacaggcatacacccacacacatggaatgctgactttttgt
ggtcaatgttctctgtaactcagtcagtggggacttagttgattactggg
ttgtggttggggcccagagattgcaaaaacacagccagcttttatctcag
gaagcctgtgctcccttttcagaaagaaaaattactatgacaaacatgaa
gacaggctaagagaagaagggcaggagggaataatctttagttcatcctt
ccttacaaagacaacagttggcttaggtcagagcacctatatgttgtcat
gtgtccagtacttttcgatgcatttagtgtgtaataatacactccattat
caaagcaactgctaggacttaaaggcattcctcagatttcatgaactgga
aacctcgacctagtggaacagctagaacctctgggaggtgactaaatcat
gagaactctgcctctacaaagaggtcaatcttagaagttaatggatgtca
caggagatgctttgtgaaaatatcaagcttgctttagcatgcttgctctg
tacatcatgcaatgccctccatcagcagatgcaggcaagatatctaccag
tgcatgctcttggacttctattactatgagccaaataaactttctgtgct
ctataatcagtccagtctcaggtgtttcagagatacagcagaaaatgaag
taagataacaaccctagaagattcttttattaagaaactactacttgtgt
ctttttcttcataataaacccaaaaaaaaacatgattccatagcactatc
tggtaattgacaattagcattaccaggagtaggaccctattcagttggcc
aatttctaatggggtagtaacctaccagtgcccaatttgag
gaattcaaaagtaattctaaaacactgatgacgtcagagaggactcagat
acatttataaggaaattaaagaagtcaacccaagatgtttaacaatgtgg
atgagtaattctgcataaatagagattctgaaaaaaattagaaataaaaa
gttcaagaagtaacattaaaaaaaatggaatagaaaccattaccaataga
ctagaccaagtttgaggaatacttacagtcagacaagagtttaaaaaaat
caaatatgattatacacttaagatctctgagatatgattaaaagagaaga
ccagtgaaccagtgatgttcaagatgagacagagaaaagaccaaaggcac
agaaaaaaactcttgcataaaaactacagcaaaaatcctttaagcccagg
gtaaggtaaggacatctaaatacagaagacctgcattttggacctcatac
aggtgtgaacataaaatattgtcttagttgggtttcattcctgcaaagag
acaccgcaaccacagcaactcttcaaaggacaccattcaattgggtcttg
cttccagattcagaggttcgttattcagaggttcagttattcagaggtat
cattatgatgggaagcatggcagcatctaggcaggcatggtgctggggca
gctgagagtgctacttcttgttctgaaggcaggaaggagaagaagactgg
cttccaggcagctaggaggagggtcttaaagcccacacccacaatggcac
acttcctccaacaggccacacctcctgacattgccactccctggaccaag
cattttcaaaccaccataaatatattaagaagtgaaaacaaaaagcccga
tgatttgctatcttgaaaaaaaaactcatctgtgtgaaccaaaaatgaca
gttagaaaataatattccaagaaaatagaatatgaaagccagcagtagtt
gtactcacttatgacaaagtagacctcagtcaaatgacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89868026_89869171
seq2: B6Ng01-157D20.b_43_1183 (reverse)

seq1  CTCAAATT-GGCACTGGTAGTGTATTTACACCA-TAGAAATTGGCAAACT  48
      |||||||| ||||||||||| ||   ||| ||| ||||||||||| ||||
seq2  CTCAAATTGGGCACTGGTAG-GTTACTACCCCATTAGAAATTGGCCAACT  49

seq1  GAATAGGTCCCTACCTCTTGTGATGCTAATTGTACATTTACCAGATAGTG  98
      |||||||  |||||  || || ||||||||||| || |||||||||||||
seq2  GAATAGGGTCCTACTCCTGGTAATGCTAATTGT-CAATTACCAGATAGTG  98

seq1  CTCTGGAATCATGTTTTTTTTTGGGTTTTATTATTGAAGAAAAGGCACA-  147
      || |||||||||||||||||||||| ||||||| ||||||||| | ||| 
seq2  CTATGGAATCATGTTTTTTTTTGGG-TTTATTA-TGAAGAAAAAG-ACAC  145

seq1  AAGTAGTAGTTTCTTATATAAAAGGAATCCTTCTAGGGTTGTTATCTTAC  197
      |||||||||||||||| |||||| |||| |||||||||||||||||||||
seq2  AAGTAGTAGTTTCTTA-ATAAAA-GAAT-CTTCTAGGGTTGTTATCTTAC  192

seq1  TTCATTTTCTGCTGTTATCTCTGAAACACCTGAGACTGG-CTGATTATAG  246
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  TTCATTTTCTGCTG-TATCTCTGAAACACCTGAGACTGGACTGATTATAG  241

seq1  AGCACAG-AAGTTTATTTGGCTCATAGTTATAGAAGTCCAAGAGCATGCA  295
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AGCACAGAAAGTTTATTTGGCTCATAGTAATAGAAGTCCAAGAGCATGCA  291

seq1  CTGGTAGATATCTTGCCTGCATCTGCTGATGGAGGGCATTGCATGATGCT  345
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGGTAGATATCTTGCCTGCATCTGCTGATGGAGGGCATTGCATGATG-T  340

seq1  ACAGAGCAAGCATGCTAAAGCAAGCTTGATATTTTCACAAAGCATCTCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAAGCATGCTAAAGCAAGCTTGATATTTTCACAAAGCATCTCCT  390

seq1  GTGACATCCATTAACTTCTAAGATTGACCTCTTTGTAGAGGCAGAGTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCCATTAACTTCTAAGATTGACCTCTTTGTAGAGGCAGAGTTCT  440

seq1  CATGATTTAGTCACCTCCCAGAGGTTCTAGCTGTTCCACTAGGTCGAGGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTAGTCACCTCCCAGAGGTTCTAGCTGTTCCACTAGGTCGAGGT  490

seq1  TTCCAGTTCATGAAATCTGAGGAATGCCTTTAAGTCCTAGCAGTTGCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTCATGAAATCTGAGGAATGCCTTTAAGTCCTAGCAGTTGCTTT  540

seq1  GATAATGGAGTGTATTATTACACACTAAATGCATCGAAAAGTACTGGACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGAGTGTATTATTACACACTAAATGCATCGAAAAGTACTGGACA  590

seq1  CATGACAACATATAGGTGCTCTGACCTAAGCCAACTGTTGTCTTTGTAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACATATAGGTGCTCTGACCTAAGCCAACTGTTGTCTTTGTAAG  640

seq1  GAAGGATGAACTAAAGATTATTCCCTCCTGCCCTTCTTCTCTTAGCCTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGAACTAAAGATTATTCCCTCCTGCCCTTCTTCTCTTAGCCTGT  690

seq1  CTTCATGTTTGTCATAGTAATTTTTCTTTCTGAAAAGGGAGCACAGGCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTTTGTCATAGTAATTTTTCTTTCTGAAAAGGGAGCACAGGCTT  740

seq1  CCTGAGATAAAAGCTGGCTGTGTTTTTGCAATCTCTGGGCCCCAACCACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATAAAAGCTGGCTGTGTTTTTGCAATCTCTGGGCCCCAACCACA  790

seq1  ACCCAGTAATCAACTAAGTCCCCACTGACTGAGTTACAGAGAACATTGAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTAATCAACTAAGTCCCCACTGACTGAGTTACAGAGAACATTGAC  840

seq1  CACAAAAAGTCAGCATTCCATGTGTGTGGGTGTATGCCTGTTCCTACTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAGTCAGCATTCCATGTGTGTGGGTGTATGCCTGTTCCTACTAT  890

seq1  TCGGGTGTCTGTCTGGTAGAGAACCCTGTGCTTGCCTTGTTGGCTTGAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTGTCTGTCTGGTAGAGAACCCTGTGCTTGCCTTGTTGGCTTGAGA  940

seq1  ATGAACCAATATTGTAGGTCAGGCACCTCCAGTTGACCACTGACTCAGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCAATATTGTAGGTCAGGCACCTCCAGTTGACCACTGACTCAGGT  990

seq1  AGTCCATCTGCCAGGTGACTGACAAATCACTAGGGCTTTCCCCTGCCTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATCTGCCAGGTGACTGACAAATCACTAGGGCTTTCCCCTGCCTCT  1040

seq1  GGATAAAGCTGAAGTGTAACTATATCATGGATCAGTTATGGGCTTTCCCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGCTGAAGTGTAACTATATCATGGATCAGTTATGGGCTTTCCCC  1090

seq1  TCCCCCCCTTTCTCACCCTTTCCCAGCTCTGCACAAGGTCTCAGGGAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCTTTCTCACCCTTTCCCAGCTCTGCACAAGGTCTCAGGGAATT  1140

seq1  C  1146
      |
seq2  C  1141

seq1: chr12_89718095_89719061
seq2: B6Ng01-157D20.g_65_1029

seq1  GAATTCAAAAGTAATTCTAAAACACTGATGACGTCAGAGAGGACTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGTAATTCTAAAACACTGATGACGTCAGAGAGGACTCAGAT  50

seq1  ACATTTATAAGGAAATTAAAGAAGTCAACCCAAGATGTTTAACAATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATAAGGAAATTAAAGAAGTCAACCCAAGATGTTTAACAATGTGG  100

seq1  ATGAGTAATTCTGCATAAATAGAGATTCTGAAAAAAATTAGAAATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAATTCTGCATAAATAGAGATTCTGAAAAAAATTAGAAATAAAAA  150

seq1  GTTCAAGAAGTAACATTAAAAAAAATGGAATAGAAACCATTACCAATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGAAGTAACATTAAAAAAAATGGAATAGAAACCATTACCAATAGA  200

seq1  CTAGACCAAGTTTGAGGAATACTTACAGTCAGACAAGAGTTTAAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCAAGTTTGAGGAATACTTACAGTCAGACAAGAGTTTAAAAAAAT  250

seq1  CAAATATGATTATACACTTAAGATCTCTGAGATATGATTAAAAGAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGATTATACACTTAAGATCTCTGAGATATGATTAAAAGAGAAGA  300

seq1  CCAGTGAACCAGTGATGTTCAAGATGAGACAGAGAAAAGACCAAAGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAACCAGTGATGTTCAAGATGAGACAGAGAAAAGACCAAAGGCAC  350

seq1  AGAAAAAAACTCTTGCATAAAAACTACAGCAAAAATCCTTTAAGCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAACTCTTGCATAAAAACTACAGCAAAAATCCTTTAAGCCCAGG  400

seq1  GTAAGGTAAGGACATCTAAATACAGAAGACCTGCATTTTGGACCTCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTAAGGACATCTAAATACAGAAGACCTGCATTTTGGACCTCATAC  450

seq1  AGGTGTGAACATAAAATATTGTCTTAGTTGGGTTTCATTCCTGCAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGAACATAAAATATTGTCTTAGTTGGGTTTCATTCCTGCAAAGAG  500

seq1  ACACCGCAACCACAGCAACTCTTCAAAGGACACCATTCAATTGGGTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGCAACCACAGCAACTCTTCAAAGGACACCATTCAATTGGGTCTTG  550

seq1  CTTCCAGATTCAGAGGTTCGTTATTCAGAGGTTCAGTTATTCAGAGGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGATTCAGAGGTTCGTTATTCAGAGGTTCAGTTATTCAGAGGTAT  600

seq1  CATTATGATGGGAAGCATGGCAGCATCTAGGCAGGCATGGTGCTGGGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGATGGGAAGCATGGCAGCATCTAGGCAGGCATGGTGCTGGGGCA  650

seq1  GCTGAGAGTGCTACTTCTTGTTCTGAAGGCAGGAAGGAGAAGAAGACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGTGCTACTTCTTGTTCTGAAGGCAGGAAGGAGAAGAAGACTGG  700

seq1  CTTCCAGGCAGCTAGGAGGAGGGTCTTAAAGCCCACACCCACAATGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGCAGCTAGGAGGAGGGTCTTAAAGCCCACACCCACAATGGCAC  750

seq1  ACTTCCTCCAACAAGGCCACACCTCCTGACATTGCCACTCCCTGGACCAA  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCCAAC-AGGCCACACCTCCTGACATTGCCACTCCCTGGACCAA  799

seq1  GCATTTTCAAACCACCATAAATATATTAAGAAGTGAAAACAAAAAGCCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCAAACCACCATAAATATATTAAGAAGTGAAAACAAAAAGCCCG  849

seq1  ATGATTTGCTATCTTGAAAAAAAAACTCATCTGTGTGAACCAAAAATGAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGATTTGCTATCTTGAAAAAAAAACTCATCTGTGTGAACCAAAAATG-A  898

seq1  CAGTTAGAAAATAATATTCCAAGAAAATAGAATATGAAAGCCAGCAGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGAAAATAATATTCCAAGAAAATAGAATATGAAAGCCAGCAGTAG  948

seq1  TTGTACTCACTTATGAC  967
      |||||||||||||||||
seq2  TTGTACTCACTTATGAC  965