BAC Information

Click to search

BAC

Clone NameB6Ng01-157N21
Chromosome12 (Build37)
Map Location 63,008,921 - 63,010,046
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707
Downstream geneLOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157N21.bB6Ng01-157N21.g
ACCDH951983DH951984
length1,1191,139
definitionDH951983|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N21, 5' end.DH951984|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacgtaaaattatggaaatctatattatagcatgtatcttcttgt
cattttggatacagaaacattactgatttctctgtgctagttattattat
tacaagctccactgggaaaaactgcaaaaggatcttcacatcctgtacat
atattcacaaacatttgtcaatggatatgtctatttataggcattccatg
ggaaaggtattaaataactctaataatttcaactctatgtatgaaattat
agtggaatatttactaaaaaagagaaaagacttttattcattgacttttt
tttaaaagtcattaaaattccatcattttaatgggacaaagcacaggtaa
ttttaagtacaagggacaaagcataggtaattttctgttgctccatgaag
gagtttgagttatatttgtaatgagaatatctgtcctgtaataattggag
gtacaaactgaaggaacttctgtaacgatcagaatagtcctgtatattac
caagtattttgttggaaaattagtcttgaacattaacaaagcattttcta
agcagttccgaattgttttgttttctttcagtaaataatgagtaccttta
ttatatactaattggtaggttcctcttgtgttatcaccttatgtagattt
agatctgaagatatacattgttagattaatttgtgtatatttcaaaaaga
ctaaattctggaagattaaactaaggaaattatcttgctgtattagttct
agtagaacgatagatgttggtgttgaataggtcgttcagtggctaagagt
actggctgatcttaaataagatgtgggtttggttcccagtaaacatcagt
ggcacaaaaatatgttattccagttctgagggtctgttttcccttctggc
ctccatgaccaccaaacaggcatgcatgtgatgtatatacatattatgtt
gttataaactcatacaaataaataatatacatattttaatttttatttat
tcacattacattcaatatcagccccacacttctctcaagtatcctctcac
acagaattctccactaattcccccttcttttcttctgagaaaagagggag
agccctctggttatacctc
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccaacaatacctctcctgggc
atatatccagaagatgccccaaatggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtggagactgccatatccaggatccaccccataatca
gcatccaaacgctgacaccattgcatacactagcaagattttattgaaag
gacccagatgtagctgtctcttgtgaaactatgccggggcctagcaaaca
cagaagtgattctcacagtcagctaatggatggatcatagggctccaatg
aggagctagagaatgtagccagagctaagggatctgctaccctatagtga
acaaacatatgactacagtactcgagctctgactctagctgcatattgtt
caaagatgctagcgcatcactgagaagtccaatgactgcaactttatatt
gctcagatacaggaatctagtcaaaggggaatggtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63008921_63010046
seq2: B6Ng01-157N21.b_45_1163

seq1  GAATTCACGTAAAATTATGGAAATCTATATTATAGCATGTATCTTCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTAAAATTATGGAAATCTATATTATAGCATGTATCTTCTTGT  50

seq1  CATTTTGGATACAGAAACATTACTGATTTCTCTGTGCTAGTTATTATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGATACAGAAACATTACTGATTTCTCTGTGCTAGTTATTATTAT  100

seq1  TACAAGCTCCACTGGGAAAAACTGCAAAAGGATCTTCACATCCTGTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTCCACTGGGAAAAACTGCAAAAGGATCTTCACATCCTGTACAT  150

seq1  ATATTCACAAACATTTGTCAATGGATATGTCTATTTATAGGCATTCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACAAACATTTGTCAATGGATATGTCTATTTATAGGCATTCCATG  200

seq1  GGAAAGGTATTAAATAACTCTAATAATTTCAACTCTATGTATGAAATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTATTAAATAACTCTAATAATTTCAACTCTATGTATGAAATTAT  250

seq1  AGTGGAATATTTACTAAAAAAGAGAAAAGACTTTTATTCATTGACTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATATTTACTAAAAAAGAGAAAAGACTTTTATTCATTGACTTTTT  300

seq1  TTTAAAAGTCATTAAAATTCCATCATTTTAATGGGACAAAGCACAGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTCATTAAAATTCCATCATTTTAATGGGACAAAGCACAGGTAA  350

seq1  TTTTAAGTACAAGGGACAAAGCATAGGTAATTTTCTGTTGCTCCATGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTACAAGGGACAAAGCATAGGTAATTTTCTGTTGCTCCATGAAG  400

seq1  GAGTTTGAGTTATATTTGTAATGAGAATATCTGTCCTGTAATAATTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAGTTATATTTGTAATGAGAATATCTGTCCTGTAATAATTGGAG  450

seq1  GTACAAACTGAAGGAACTTCTGTAACGATCAGAATAGTCCTGTATATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAACTGAAGGAACTTCTGTAACGATCAGAATAGTCCTGTATATTAC  500

seq1  CAAGTATTTTGTTGGAAAATTAGTCTTGAACATTAACAAAGCATTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTTTGTTGGAAAATTAGTCTTGAACATTAACAAAGCATTTTCTA  550

seq1  AGCAGTTCCGAATTGTTTTGTTTTCTTTCAGTAAATAATGAGTACCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTCCGAATTGTTTTGTTTTCTTTCAGTAAATAATGAGTACCTTTA  600

seq1  TTATATACTAATTGGTAGGTTCCTCTTGTGTTATCACCTTATGTAGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACTAATTGGTAGGTTCCTCTTGTGTTATCACCTTATGTAGATTT  650

seq1  AGATCTGAAGATATACATTGTTAGATTAATTTGTGTATATTTCAAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGAAGATATACATTGTTAGATTAATTTGTGTATATTTCAAAAAGA  700

seq1  CTAAATTCTGGAAGATTAAACTAAGGAAATTATCTTGCTGTATTAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTCTGGAAGATTAAACTAAGGAAATTATCTTGCTGTATTAGTTCT  750

seq1  AGTAGAACGATAGATGTTGGTGTTGAATAGGTCGTTCAGTGGCTAAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAACGATAGATGTTGGTGTTGAATAGGTCGTTCAGTGGCTAAGAGT  800

seq1  ACTGGCTGATCTTAAATAAGATGTGGGTTTGGTTCCCAGTAAACATCAGG  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTGGCTGATCTTAAATAAGATGTGGGTTTGGTTCCCAGTAAACATCA-G  849

seq1  TGGCACAAAAATATGTTATTCCAGTTCTGAGGGGTCTGTTTTCCCCTTCT  900
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TGGCACAAAAATATGTTATTCCAGTTCTGA-GGGTCTGTTTT-CCCTTCT  897

seq1  GGCCTCCATGACCACCAAACAGGCATGCATGTGATGTATATACATA-TAT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCCTCCATGACCACCAAACAGGCATGCATGTGATGTATATACATATTAT  947

seq1  GTTGTTATAAACTCATACAAATAAAATAATATACATATTTTAAATTTTAT  999
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  GTTGTTATAAACTCATACAAAT-AAATAATATACATATTTTAATTTTTAT  996

seq1  TTATTCACATTACATTCCAATATCAGCCCCACACCTTCTCCTTCAAGTAT  1049
      |||||||||||||||| |||||||||||||||| ||||||  ||||||||
seq2  TTATTCACATTACATT-CAATATCAGCCCCACA-CTTCTC--TCAAGTAT  1042

seq1  CCTCTCACACAG-ATCCTCCACTAATTCCCCCCTCCTTTTCTTCTTTGAG  1098
      |||||||||||| || ||||||||||| |||||| ||||||||||  || 
seq2  CCTCTCACACAGAATTCTCCACTAATT-CCCCCTTCTTTTCTTCTGAGAA  1091

seq1  AAGAGGGAGAG-CCTCTGGTTATCACCTC  1126
      ||||||||||| ||||||||||| |||||
seq2  AAGAGGGAGAGCCCTCTGGTTAT-ACCTC  1119