BAC Information

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BAC

Clone NameB6Ng01-158F16
Chromosome12 (Build37)
Map Location 59,031,720 - 59,189,177
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158F16.bB6Ng01-158F16.g
ACCDH952323DH952324
length9631,157
definitionDH952323|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F16, 5' end.DH952324|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,031,720 - 59,032,685)(59,188,011 - 59,189,177)
sequence
gaattccaatcatattctgaataagcaagcactatgattattctccagat
acccatgacccaggctcaataattgtcaacattctgtcatcctcattttg
tctcttctcacatccctgttccctgcccctggtaccactgctacatttcc
acagtccctttagagatctgattgttgtgcactgaaatgcaccaacactg
aatgcattgactcgtgattgtgcctctgcttgagaggttaaatggttgtt
atccaagagcaatggtaggactggatagccaataggagaggaaactagac
agcaggggaatggtaaggagtgctaggggaggatggtaagcaaactggct
ggtaagctggtaagcaaactggctgtattctgatgtattctcttctaatt
tcatccttgttgaaaactttatgccaactataagctacatagtaaggatg
aagttcattcatgtcataacgatggtatcttcctaaactaggcattcttc
ttctttaggtcatttttggggtataatgtagatgtgaacaatcctttctg
ctgtaggactctatctgttgcagacccatgcaggccctgtatatgttgcc
aagctttttcttagcaaatacatagaagggaattattaggtaaagggata
agggtatacttaacttttaaagatattgtcaatcatttacccaaatccac
tgtgcattttctataatttttgggggggaagggggaagaatttcaccatg
taacatacgttggtcttgaactcatgaccctctaatcctagcctcttgaa
atctgaaattttaattgtgtgttatcactcccagacactgttttctgatt
gtaccatatctttagctgatgtggccaatcttgcattaagtcacccatgt
gtatggccatctcctccacatttgattttgctcagtatgactaatgatgt
gaacaacccttca
gaattccgtcagagtgagaagcagattcttaaaagagtggaacacaaaca
catcataaactgagatgctctatggctgtgcacgggagaaaataagatgc
tcttcaagttacttagacttagaaaaagataaaaagtagttgtgtttatt
ctggttcttccactgtgagctcaacttaagagagaccgtcttgtccctgt
cacagaagaaaaaggcaagtgtagacagcctcctctctcatccttggaag
aactttgcaatatttttgcttttatctcaaattgctgaaagtggacctca
aggtgcgcctaaagctgtctgtgtgtcatttaaggacactgcctttgcat
ttcgaaatgtatccaaacgaacatcatcactatggatgcaggcatgactg
aaggctgctataagtctggaagaaaattaatgatctggtacttgtcggga
actttcttcctatagctgagattttagaggctgaaactgtctgcagatct
atttttctaccccttcttcttatgtcaaatagaatcccatgcatgaaaaa
agagagtagtttttttatcccatctcctcagaaactccctgtgggaggaa
atgatcctcaaggaagattttagtgtgacatatggagacttttacacctt
cagagctatataaaatgagagctgcctcacaagtatggattcaattcact
ttcagcagaaaaggagacgtgggtctcagtttgaggttataatttttttg
ggtagaagggacaggacaacctctgagttctagtctgattataaattcta
tgatgtaatctttcttgatgactcagaggagactggtgaatgcaaattga
cacagtgcacagcatattgaagcagtgagatacctagggccatgagctga
gttcatctgcattttcttatgcaccattgcaccattgcttccgacagcct
ggtctttgtgttagtttgcagtcttgtctgctaatcctgttcaaatctct
gcccaggtggtcagtagcccattaacatctttcctcatctgagtgaaatc
tttaggctcaagaaactgtgttattaggcttggtgtgaactgtatgcgtt
acagttaactttgagattctgtagggcgcgcacctatattaagcttagtg
aaccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59031720_59032685
seq2: B6Ng01-158F16.b_48_1010

seq1  GAATTCCAATCATATTCTGAATAAGCAAGCACTATGATTATTCTCCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCATATTCTGAATAAGCAAGCACTATGATTATTCTCCAGAT  50

seq1  ACCCATGACCCAGGCTCAATAATTGTCAACATTCTGTCATCCTCATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGACCCAGGCTCAATAATTGTCAACATTCTGTCATCCTCATTTTG  100

seq1  TCTCTTCTCACATCCCTGTTCCCTGCCCCTGGTACCACTGCTACATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCACATCCCTGTTCCCTGCCCCTGGTACCACTGCTACATTTCC  150

seq1  ACAGTCCCTTTAGAGATCTGATTGTTGTGCACTGAAATGCACCAACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCTTTAGAGATCTGATTGTTGTGCACTGAAATGCACCAACACTG  200

seq1  AATGCATTGACTCGTGATTGTGCCTCTGCTTGAGAGGTTAAATGGTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTGACTCGTGATTGTGCCTCTGCTTGAGAGGTTAAATGGTTGTT  250

seq1  ATCCAAGAGCAATGGTAGGACTGGATAGCCAATAGGAGAGGAAACTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGAGCAATGGTAGGACTGGATAGCCAATAGGAGAGGAAACTAGAC  300

seq1  AGCAGGGGAATGGTAAGGAGTGCTAGGGGAGGATGGTAAGCAAACTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGAATGGTAAGGAGTGCTAGGGGAGGATGGTAAGCAAACTGGCT  350

seq1  GGTAAGCTGGTAAGCAAACTGGCTGTATTCTGATGTATTCTCTTCTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCTGGTAAGCAAACTGGCTGTATTCTGATGTATTCTCTTCTAATT  400

seq1  TCATCCTTGTTGAAAACTTTATGCCAACTATAAGCTACATAGTAAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTGTTGAAAACTTTATGCCAACTATAAGCTACATAGTAAGGATG  450

seq1  AAGTTCATTCATGTCATAACGATGGTATCTTCCTAAACTAGGCATTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATTCATGTCATAACGATGGTATCTTCCTAAACTAGGCATTCTTC  500

seq1  TTCTTTAGGTCATTTTTGGGGTATAATGTAGATGTGAACAATCCTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGGTCATTTTTGGGGTATAATGTAGATGTGAACAATCCTTTCTG  550

seq1  CTGTAGGACTCTATCTGTTGCAGACCCATGCAGGCCCTGTATATGTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGACTCTATCTGTTGCAGACCCATGCAGGCCCTGTATATGTTGCC  600

seq1  AAGCTTTTTCTTAGCAAATACATAGAAGGGAATTATTAGGTAAAGGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTTCTTAGCAAATACATAGAAGGGAATTATTAGGTAAAGGGATA  650

seq1  AGGGTATACTTAACTTTTAAAGATATTGTCAATCATTTACCCAAATCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATACTTAACTTTTAAAGATATTGTCAATCATTTACCCAAATCCAC  700

seq1  TGTGCATTTTCTATAATTTTTGGGGGGGAAGGGGGAAGAATTTCACCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTTCTATAATTTTTGGGGGGGAAGGGGGAAGAATTTCACCATG  750

seq1  TAACATACGTTGGTCTTGAACTCATGACCCTCTAATCCTAGCCTCTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACGTTGGTCTTGAACTCATGACCCTCTAATCCTAGCCTCTTGAA  800

seq1  ATCTGAAATTTTAATTGTGTGTTATCACTCCCAGACACTGTTTTCTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAATTTTAATTGTGTGTTATCACTCCCAGACACTGTTTTCTGATT  850

seq1  GTACCATATCTTTAGCTGATGTGGCCAATCTTGCATTTAGTCACCCATGT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTACCATATCTTTAGCTGATGTGGCCAATCTTGCATTAAGTCACCCATGT  900

seq1  GTAATGCCATCTCCTCCAACATTTGATTTTGTCTCAGTATGACTAATGAT  950
      |||  |||||||||||| ||||||||||||| ||||||||||||||||||
seq2  GTATGGCCATCTCCTCC-ACATTTGATTTTG-CTCAGTATGACTAATGAT  948

seq1  GTGGAACAACCTTTCA  966
      || |||||||| ||||
seq2  GT-GAACAACCCTTCA  963

seq1: chr12_59188011_59189177
seq2: B6Ng01-158F16.g_67_1223 (reverse)

seq1  CATGGTTCACCTAGCTTTAATTAGTTGCTGCG-CTTACAGAATTCTAAAG  49
      ||||||||||  ||||| |  ||| ||| ||| | ||||||||   ||||
seq2  CATGGTTCACTAAGCTTAATATAGGTGC-GCGCCCTACAGAATCTCAAAG  49

seq1  TTAAAACTGTAACGCATACAGTCTACACAAGCCCTAATGTACACAGTTTC  99
      ||  ||||||||||||||||||  |||| |  ||||||  ||||||||||
seq2  TT--AACTGTAACGCATACAGTTCACACCAAGCCTAAT-AACACAGTTTC  96

seq1  TTGAGCTCTAAAGATTTCCACTCAGATGAGGAAAGATGTTTAATGTGCTA  149
      |||||| |||||||||| |||||||||||||||||||| |||||| ||||
seq2  TTGAGC-CTAAAGATTT-CACTCAGATGAGGAAAGATG-TTAATGGGCTA  143

seq1  CTTGACCAACCTGGGCAGAGATATGAACAGGATTAGCAGACAAGACTGCA  199
      | ||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  C-TGACC-ACCTGGGCAGAGATTTGAACAGGATTAGCAGACAAGACTGCA  191

seq1  AACTAACAACAAAGACCAGGCTGTCGGAAGCAATGGTGCAATGGTGCATA  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAC-ACAAAGACCAGGCTGTCGGAAGCAATGGTGCAATGGTGCATA  240

seq1  AGAAAATGCAGATGAACTCAGCTCATGGCCCTAGGTATCTCACTGCTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGCAGATGAACTCAGCTCATGGCCCTAGGTATCTCACTGCTTCA  290

seq1  ATATGCTGTGCACTGTGTCAATTTGCATTCACCAGTCTCCTCTGAGTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGTGCACTGTGTCAATTTGCATTCACCAGTCTCCTCTGAGTCAT  340

seq1  CAAGAAAGATTACATCATAGAATTTTATAATCAGACTAGAACTCAGAGGT  399
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAGAAAGATTACATCATAGAA-TTTATAATCAGACTAGAACTCAGAGGT  389

seq1  TGTCCTGTCCCTTCTACCCAAAAAAATTATAACCTCAAACTGAGACCCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTCCCTTCTACCCAAAAAAATTATAACCTCAAACTGAGACCCAC  439

seq1  GTCTCCTTTTCTGCTGAAAGTGAATTGAATCCATACTTGTGAGGCAGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTTTCTGCTGAAAGTGAATTGAATCCATACTTGTGAGGCAGCTC  489

seq1  TCATTTTATATAGCTCTGAAGGTGTAAAAGTCTCCATATGTCACACTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATATAGCTCTGAAGGTGTAAAAGTCTCCATATGTCACACTAAA  539

seq1  ATCTTCCTTGAGGATCATTTCCTCCCACAGGGAGTTTCTGAGGAGATGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTTGAGGATCATTTCCTCCCACAGGGAGTTTCTGAGGAGATGGG  589

seq1  ATAAAAAAACTACTCTCTTTTTTCATGCATGGGATTCTATTTGACATAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAACTACTCTCTTTTTTCATGCATGGGATTCTATTTGACATAAG  639

seq1  AAGAAGGGGTAGAAAAATAGATCTGCAGACAGTTTCAGCCTCTAAAATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGGTAGAAAAATAGATCTGCAGACAGTTTCAGCCTCTAAAATCT  689

seq1  CAGCTATAGGAAGAAAGTTCCCGACAAGTACCAGATCATTAATTTTCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATAGGAAGAAAGTTCCCGACAAGTACCAGATCATTAATTTTCTTC  739

seq1  CAGACTTATAGCAGCCTTCAGTCATGCCTGCATCCATAGTGATGATGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTATAGCAGCCTTCAGTCATGCCTGCATCCATAGTGATGATGTTC  789

seq1  GTTTGGATACATTTCGAAATGCAAAGGCAGTGTCCTTAAATGACACACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATACATTTCGAAATGCAAAGGCAGTGTCCTTAAATGACACACAG  839

seq1  ACAGCTTTAGGCGCACCTTGAGGTCCACTTTCAGCAATTTGAGATAAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTAGGCGCACCTTGAGGTCCACTTTCAGCAATTTGAGATAAAAG  889

seq1  CAAAAATATTGCAAAGTTCTTCCAAGGATGAGAGAGGAGGCTGTCTACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATATTGCAAAGTTCTTCCAAGGATGAGAGAGGAGGCTGTCTACAC  939

seq1  TTGCCTTTTTCTTCTGTGACAGGGACAAGACGGTCTCTCTTAAGTTGAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTTTCTTCTGTGACAGGGACAAGACGGTCTCTCTTAAGTTGAGC  989

seq1  TCACAGTGGAAGAACCAGAATAAACACAACTACTTTTTATCTTTTTCTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGGAAGAACCAGAATAAACACAACTACTTTTTATCTTTTTCTAA  1039

seq1  GTCTAAGTAACTTGAAGAGCATCTTATTTTCTCCCGTGCACAGCCATAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGTAACTTGAAGAGCATCTTATTTTCTCCCGTGCACAGCCATAGA  1089

seq1  GCATCTCAGTTTATGATGTGTTTGTGTTCCACTCTTTTAAGAATCTGCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCAGTTTATGATGTGTTTGTGTTCCACTCTTTTAAGAATCTGCTT  1139

seq1  CTCACTCTGACTGAATTC  1167
      ||||||||||| ||||||
seq2  CTCACTCTGACGGAATTC  1157