BAC Information

Click to search

BAC

Clone NameB6Ng01-158G13
Chromosome12 (Build37)
Map Location 78,430,423 - 78,431,446
singlet/doubletsinglet
Overlap geneFut8
Upstream geneAkap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
Downstream geneLOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158G13.bB6Ng01-158G13.g
ACCDH952363DH952364
length1,2181,022
definitionDH952363|Mus musculus domesticus DNA, BAC clone: B6Ng01-158G13, 5' end.DH952364|Mus musculus domesticus DNA, BAC clone: B6Ng01-158G13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcagggatggcatgtgacttggaagtgacataaatcctttct
ttcccaagttgttttttggccatggtgtttaatcacagcaacagaaaatt
caacttagataatcacattataaggcaatatatttttcaataagctaaat
aaaatggaagccatgtggttcactggtattaatatgctgaagttgctaat
tatttgtccctgtgaagaactgctgtgcctgtccccacagtgactctgtg
ggcctaagcatctcccatgaccacaagcagagataatggagttcatgaat
cacatgtttcatgttccttttaaaatctgaggttacatagtttgaaatgt
agctatgtgaaaaatagatgctaaaaccaacactgaaaattctctagaag
aggcaatgatgttcagatacctatttgcctattagcagctaacgtgttta
atacattactgttgctgagtactattgttgttccacatgacacaagtatt
tagttctcacaaaaactatgcactaggcaacatgtttgaaagtgatgtct
aactgaatggcagacaaagtgacaaatcagagaaagatttgacaaaatag
gatatagtcaactctcacaagaacagaaaaggaaaaaaaaaaagaggcta
cggaagagagaacaaagcagagagaaaagaggggaaggaggcagttttac
caggacagctatagagacagttgcagagagagaataagctagatgcaggt
aaagacagaatgaatcagagaataaacaggagctagaagattagaatata
ttgccaaagttagtatgagaccaaaaagagaaattcaggagaggctgaga
aagaagattgaatcagtcagcttggagaggagttcgagtgagaacagctg
agttgatcatccagccggagatcagaaagaaaagaaaggctgagcttatt
cagcagcagtctcagagtctgaaaacattctaggtctaggaaattttatg
gagtagagcttcaagactagctgagttagcacacagtcaattagcttgag
actcagtactcaagcaaaaaaaaaaaaaaaaacgttactttacaaacttc
tattgactttaattaaatagttggtatcagctcactcgggtaaaacatgt
gaatttctggtaaaatgctaatctggtgaccacttaacttgaggcaaatg
caacctcttagtctagtg
gaattctagaaacaacctctcaaaaacagagttaagataatattaacaat
taagaatatgctcatgttttacttttgtagtaatttattattttatagtt
tataatctcagtcttgttgcaagtatagtaatttaataccttggatattt
tgaatactggtttatcaaatttaatgcaatttgtacaaaaattatgtttc
tgtacttcactgttaaaatcatatctttgaataattgtgataatttacat
tatgattgcaagtaaaatgtttcaactattttgctatcccttgttactta
aattatttctttttagaagttttgttctttttgtctatcatagtagtcta
ggtttctttgattatggaggataacaaagttgtaaattttttgtctatat
atttatgtctttgtctatctaatctcctaatatcttggaaataacttcag
cacgtggtctgatggattttttcagtgctctataagttttcatagcaaac
tattactcagatatccattcttcaattttaattatttattaaattgagtc
cattgcttaggctctcagacttgagttttattttaatcaagaagccctga
gtgtctgcattgtttctttatatttggaacagtaaaccttactagctggt
ccttcacctgtgtcagaacgctgtccacaaatggaatcctgcaaggggaa
ttgtgagcacttgtaagaaaagtccaagaaaacatgatttttgtgtgtgt
gtgtgtcactcccagatctagtgaatagcaatgagtctactccagattat
tcattataactggctattgttatttgtttaatatcctctgtggaaaagca
cttttaccatgtgctgattgtttttgtgagtgtatacttttctcaatgac
tcttcttaactctcagagtctaaattgtctgatgctctgaataagttggc
tattgcgtgagtcttagctcatcctcatttatcagctccatcctccagat
tccaccatctttagagtggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_78430423_78431446
seq2: B6Ng01-158G13.g_71_1092

seq1  GAATTCTAGAAACAACCTCTCAAAAACAGAGTTAAGATAATATTAACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAACAACCTCTCAAAAACAGAGTTAAGATAATATTAACAAT  50

seq1  TAAGAATATGCTCATGTTTTACTTTTGTAGTAATTTATTATTTTATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATATGCTCATGTTTTACTTTTGTAGTAATTTATTATTTTATAGTT  100

seq1  TATAATCTCAGTCTTGTTGCAAGTATAGTAATTTAATACCTTGGATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTCAGTCTTGTTGCAAGTATAGTAATTTAATACCTTGGATATTT  150

seq1  TGAATACTGGTTTATCAAATTTAATGCAATTTGTACAAAAATTATGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTGGTTTATCAAATTTAATGCAATTTGTACAAAAATTATGTTTC  200

seq1  TGTACTTCACTGTTAAAATCATATCTTTGAATAATTGTGATAATTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCACTGTTAAAATCATATCTTTGAATAATTGTGATAATTTACAT  250

seq1  TATGATTGCAAGTAAAATGTTTCAACTATTTTGCTATCCCTTGTTACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGCAAGTAAAATGTTTCAACTATTTTGCTATCCCTTGTTACTTA  300

seq1  AATTATTTCTTTTTAGAAGTTTTGTTCTTTTTGTCTATCATAGTAGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCTTTTTAGAAGTTTTGTTCTTTTTGTCTATCATAGTAGTCTA  350

seq1  GGTTTCTTTGATTATGGAGGATAACAAAGTTGTAAATTTTTTGTCTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTTGATTATGGAGGATAACAAAGTTGTAAATTTTTTGTCTATAT  400

seq1  ATTTATGTCTTTGTCTATCTAATCTCCTAATATCTTGGAAATAACTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTCTTTGTCTATCTAATCTCCTAATATCTTGGAAATAACTTCAG  450

seq1  CACGTGGTCTGATGGATTTTTTCAGTGCTCTATAAGTTTTCATAGCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGTCTGATGGATTTTTTCAGTGCTCTATAAGTTTTCATAGCAAAC  500

seq1  TATTACTCAGATATCCATTCTTCAATTTTAATTATTTATTAAATTGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTCAGATATCCATTCTTCAATTTTAATTATTTATTAAATTGAGTC  550

seq1  CATTGCTTAGGCTCTCAGACTTGAGTTTTATTTTAATCAAGAAGCCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTAGGCTCTCAGACTTGAGTTTTATTTTAATCAAGAAGCCCTGA  600

seq1  GTGTCTGCATTGTTTCTTTATATTTGGAACAGTAAACCTTACTAGCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCATTGTTTCTTTATATTTGGAACAGTAAACCTTACTAGCTGGT  650

seq1  CCTTCACCTGTGTCAGAACGCTGTCCACAAATGGAATCCTGCAAGGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCTGTGTCAGAACGCTGTCCACAAATGGAATCCTGCAAGGGGAA  700

seq1  TTGTGAGCACTTGTAAGAAAAGTCCAAGAAAACATGA-TTTTGTGTGTGT  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGTGAGCACTTGTAAGAAAAGTCCAAGAAAACATGATTTTTGTGTGTGT  750

seq1  GTGTGTCACTCCCAGATCTAGTGAATAGCAATGAGTCTACTCCAGATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCACTCCCAGATCTAGTGAATAGCAATGAGTCTACTCCAGATTAT  800

seq1  TCATTATAACTGGCTATTGTTATTTGTTTATATTCCTCTGTGGAAAAGCA  849
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  TCATTATAACTGGCTATTGTTATTTGTTTAATATCCTCTGTGGAAAAGCA  850

seq1  CTTTTACCATGTGCTGATTGTTTTTGTGAGTGTATACTTTTCTCAAATGA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTTACCATGTGCTGATTGTTTTTGTGAGTGTATACTTTTCTC-AATGA  899

seq1  CTCTTCTTAACCCTCAGAGTCTAAATTGTCTGATGCTCTGAATAAAGTTG  949
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  CTCTTCTTAACTCTCAGAGTCTAAATTGTCTGATGCTCTGAAT-AAGTTG  948

seq1  GCTATTGCGTGAGTCCTTAGCCCAT-CTCATTTATCAGCTCCATTCTCCC  998
      |||||||||||||| |||||| ||| |||||||||||||||||| || ||
seq2  GCTATTGCGTGAGT-CTTAGCTCATCCTCATTTATCAGCTCCATCCT-CC  996

seq1  AGATCCCACCACCTTTAGAGTGGTAA  1024
      |||| |||||| ||||||||||||||
seq2  AGATTCCACCATCTTTAGAGTGGTAA  1022