BAC Information

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BAC

Clone NameB6Ng01-159F07
Chromosome12 (Build37)
Map Location 77,381,444 - 77,503,769
singlet/doubletdoublet
Overlap geneMthfd1, Akap5, Zbtb25, Zbtb1
Upstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21
Downstream geneHspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159F07.bB6Ng01-159F07.g
ACCDH953025DH953026
length1,0641,101
definitionDH953025|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F07, 5' end.DH953026|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,502,690 - 77,503,769)(77,381,444 - 77,382,555)
sequence
gaattcaataaaaaactttaaaagagcttttgattaaaaaaaaaattatc
tgtgtgtgtgtatgcaatgtggtgcagaggccagaattagagaccctaga
gctagagtgacatttggtcctgagccacctgacacagatgctgggaactg
aacccaggtcctttggtgaagcagtaagtgtgcttaccctcggagccatc
tctccagctcagagttctacaaaacttaatcgggaaagttttaaagattc
tttctattcctatatgtaatttacagtttcaaaaccacgtttgccattgg
caactgcagttctctattttccatgaaagaaactgaagaaaaacttgaaa
taggaaaggattaaagaaaatatcagaccatatgtgatagtctgtgctta
tatacccagctctggggaaattcagcgaagaggaagagaggggatggagc
tgaagggatggctcagctaggaaggggactaactactcttgcagggtcct
gggttctgttcccaacatgcatatggcggttcacaaccaccattaactcc
agttctagggaatgtcaccactctctgacgtccttgggcttttgtattca
agtgcacataaactcataaaggcacgcacatacatacatacatacataag
taaaaaaataaataaacctcaggcaagcagatggtacacatccatgtaga
caaaacacctttattatattattgttattattataatatttttaaatgaa
tctttaaatatggaaggtagcgggctggagagatgtctcagcagttaaga
agctagcagctgctcttatagagggcctgggttcagttctcagcatccta
agatgaggactaacaaacatttgtacctccagttcataggatccaacgcc
ctcttctggcctccagggcactgcacatgactcagcactctcctaacaat
ttaacaaaacaagactgaagctgccaggcccaaaccgttcatacgagacc
ctagagcttcatttctgagtaactatgtctattgatgagccatgcgacaa
aactggaatcttcc
gaattccattaacactgaggcagtcatcaatgccattgcacccgagaagg
atgtggatgggtgagtgctccccgttggctttatttagagcatgattcta
ttctggaagcatagcgtgtttgtttctagaggacagaggctccactcctt
cctcctaatttgactgttttaggttgacgagcgtcagtgctgggaagctc
gccagaggtgatctaaatgactgcttcatcccatgcacacccaagggatg
cttggaactcatcaaagaggcaggtaagagtgagggaaaccagcaggaaa
atcgtgaagactcgcctctgcctgccaaaccctgggactgcaggtgtttt
cacaagtacactggctctgcgccgatttccttagctgttagttaaactta
actacagcatgtgcactccacagggctggagagacagtgcagcattttct
tgagcttctttgtgaatcaggaccactacgacccacttcctctgtattgc
cacgtatctagaaagctctttcttaggaagctttgccttcctgttggctt
caagagaacttgcctcaaaaccaaggattcagccccctgcactgaaagca
aaaagaagcaaacaaacagaccagagagagttgtttcctaagagatagca
gaaccaagatttgaacccagggttgtgtatattcaaagcaatttattttg
ggggtgggactcctaaatgccaatgagaattctgccagtacaaagtgagt
aatgttgtgggttcctgcccctggaaccagccccaagtcaactgtggttc
caacactagacagatggctggagtggatcttgtgaacattcaccccacat
tacttcagtacatagctagtacctttgtattttagttcctataaatactt
ttagcagagtttattttttgcacagaaacgagtcctgttagaaagaagca
tgtcagagtttcaagggaggcatttggccagagtagtaatgaaagtttgc
tgtgtggccagcaaggccaagcagagccttgacccagctgtgatagttcc
aactaaattataattcctcacggtgtgtagccaaattatattacagcttt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77502690_77503769
seq2: B6Ng01-159F07.b_49_1112 (reverse)

seq1  GGAAGATTACAAGTTTTGTCTGCAATGGCTTCATCAATAGGACATAGTTA  50
      |||||||| | ||||||||| || ||||| ||||||||| ||||||||||
seq2  GGAAGATT-CCAGTTTTGTC-GC-ATGGC-TCATCAATA-GACATAGTTA  45

seq1  CTTCAGAAATGAAGCTCTAAGGGTCTCTGTATGAACCGGTTTTGGGCCTG  100
      | |||||||||||||||| |||||||| ||||||||  | ||||||||||
seq2  C-TCAGAAATGAAGCTCT-AGGGTCTC-GTATGAAC--GGTTTGGGCCTG  90

seq1  GCAGCTCTCAGTCTTGTTTTGTTTAAATTGTAAGGAGAGTGCCTGAGTCA  150
      |||||| |||||||||||||| ||||||||| ||||||||| ||||||||
seq2  GCAGCT-TCAGTCTTGTTTTG-TTAAATTGTTAGGAGAGTG-CTGAGTCA  137

seq1  TGTGCAGTGCCCTTGGAGGCCAGAAGAGGGCGTTGGATCCTATTGAACTG  200
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TGTGCAGTGCCC-TGGAGGCCAGAAGAGGGCGTTGGATCCTA-TGAACTG  185

seq1  GAGGTACAAATGTTTGTTAGTCCTCATCTTAGGATGCTGAGAACTGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACAAATGTTTGTTAGTCCTCATCTTAGGATGCTGAGAACTGAACC  235

seq1  CAGGCCCTCTATAAGAGCAAGCTGCTAGCTTCTTAACTGCTGAGACATCT  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGGCCCTCTATAAGAGC-AGCTGCTAGCTTCTTAACTGCTGAGACATCT  284

seq1  CTCCAGCCCGCTACCTTCCATATTTAAAGATTCATTTAAAAATATTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCCGCTACCTTCCATATTTAAAGATTCATTTAAAAATATTATAA  334

seq1  TAATAACAATAATATAATAAAGGTGTTTTGTCTACATGGATGTGTACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAATAATATAATAAAGGTGTTTTGTCTACATGGATGTGTACCAT  384

seq1  CTGCTTGCCTGAGGTTTATTTATTTTTTTACTTATGTATGTATGTATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCCTGAGGTTTATTTATTTTTTTACTTATGTATGTATGTATGTA  434

seq1  TGTGCGTGCCTTTATGAGTTTATGTGCACTTGAATACAAAAGCCCAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGCCTTTATGAGTTTATGTGCACTTGAATACAAAAGCCCAAGGA  484

seq1  CGTCAGAGAGTGGTGACATTCCCTAGAACTGGAGTTAATGGTGGTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGAGAGTGGTGACATTCCCTAGAACTGGAGTTAATGGTGGTTGTGA  534

seq1  ACCGCCATATGCATGTTGGGAACAGAACCCAGGACCCTGCAAGAGTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCATATGCATGTTGGGAACAGAACCCAGGACCCTGCAAGAGTAGTT  584

seq1  AGTCCCCTTCCTAGCTGAGCCATCCCTTCAGCTCCATCCCCTCTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTTCCTAGCTGAGCCATCCCTTCAGCTCCATCCCCTCTCTTCCT  634

seq1  CTTCGCTGAATTTCCCCAGAGCTGGGTATATAAGCACAGACTATCACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCTGAATTTCCCCAGAGCTGGGTATATAAGCACAGACTATCACATA  684

seq1  TGGTCTGATATTTTCTTTAATCCTTTCCTATTTCAAGTTTTTCTTCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGATATTTTCTTTAATCCTTTCCTATTTCAAGTTTTTCTTCAGTT  734

seq1  TCTTTCATGGAAAATAGAGAACTGCAGTTGCCAATGGCAAACGTGGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATGGAAAATAGAGAACTGCAGTTGCCAATGGCAAACGTGGTTTT  784

seq1  GAAACTGTAAATTACATATAGGAATAGAAAGAATCTTTAAAACTTTCCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTAAATTACATATAGGAATAGAAAGAATCTTTAAAACTTTCCCG  834

seq1  ATTAAGTTTTGTAGAACTCTGAGCTGGAGAGATGGCTCCGAGGGTAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTTGTAGAACTCTGAGCTGGAGAGATGGCTCCGAGGGTAAGCA  884

seq1  CACTTACTGCTTCACCAAAGGACCTGGGTTCAGTTCCCAGCATCTGTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTGCTTCACCAAAGGACCTGGGTTCAGTTCCCAGCATCTGTGTC  934

seq1  AGGTGGCTCAGGACCAAATGTCACTCTAGCTCTAGGGTCTCTAATTCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTCAGGACCAAATGTCACTCTAGCTCTAGGGTCTCTAATTCTGG  984

seq1  CCTCTGCACCACATTGCATACACACACACAGATAATTTTTTTTTTAATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCACCACATTGCATACACACACACAGATAATTTTTTTTTTAATCA  1034

seq1  AAAGCTCTTTTAAAGTTTTTTATTGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  AAAGCTCTTTTAAAGTTTTTTATTGAATTC  1064

seq1: chr12_77381444_77382555
seq2: B6Ng01-159F07.g_68_1168

seq1  GAATTCCATTAACACTGAGGCAGTCATCAATGCCATTGCACCCGAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAACACTGAGGCAGTCATCAATGCCATTGCACCCGAGAAGG  50

seq1  ATGTGGATGGGTGAGTGCTCCCCGTTGGCTTTATTTAGAGCATGATTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATGGGTGAGTGCTCCCCGTTGGCTTTATTTAGAGCATGATTCTA  100

seq1  TTCTGGAAGCATAGCGTGTTTGTTTCTAGAGGACAGAGGCTCCACTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGCATAGCGTGTTTGTTTCTAGAGGACAGAGGCTCCACTCCTT  150

seq1  CCTCCTAATTTGACTGTTTTAGGTTGACGAGCGTCAGTGCTGGGAAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAATTTGACTGTTTTAGGTTGACGAGCGTCAGTGCTGGGAAGCTC  200

seq1  GCCAGAGGTGATCTAAATGACTGCTTCATCCCATGCACACCCAAGGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGTGATCTAAATGACTGCTTCATCCCATGCACACCCAAGGGATG  250

seq1  CTTGGAACTCATCAAAGAGGCAGGTAAGAGTGAGGGAAACCAGCAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACTCATCAAAGAGGCAGGTAAGAGTGAGGGAAACCAGCAGGAAA  300

seq1  ATCGTGAAGACTCGCCTCTGCCTGCCAAACCCTGGGACTGCAGGTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGAAGACTCGCCTCTGCCTGCCAAACCCTGGGACTGCAGGTGTTTT  350

seq1  CACAAGTACACTGGCTCTGCGCCGATTTCCTTAGCTGTTAGTTAAACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTACACTGGCTCTGCGCCGATTTCCTTAGCTGTTAGTTAAACTTA  400

seq1  ACTACAGCATGTGCACTCCACAGGGCTGGAGAGACAGTGCAGCATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGCATGTGCACTCCACAGGGCTGGAGAGACAGTGCAGCATTTTCT  450

seq1  TGAGCTTCTTTGTGAATCAGGACCACTACGACCCACTTCCTCTGTATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCTTTGTGAATCAGGACCACTACGACCCACTTCCTCTGTATTGC  500

seq1  CACGTATCTAGAAAGCTCTTTCTTAGGAAGCTTTGCCTTCCTGTTGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTATCTAGAAAGCTCTTTCTTAGGAAGCTTTGCCTTCCTGTTGGCTT  550

seq1  CAAGAGAACTTGCCTCAAAACCAAGGATTCAGCCCCCTGCACTGAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAACTTGCCTCAAAACCAAGGATTCAGCCCCCTGCACTGAAAGCA  600

seq1  AAAAGAAGCAAACAAACAGACCAGAGAGAGTTGTTTCCTAAGAGATAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGCAAACAAACAGACCAGAGAGAGTTGTTTCCTAAGAGATAGCA  650

seq1  GAACCAAGATTTGAACCCAGGGTTGTGTATATTCAAAGCAATTTATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGATTTGAACCCAGGGTTGTGTATATTCAAAGCAATTTATTTTG  700

seq1  GGGGTGGGACTCCTAAATGCCAATGAGAATTCTGCCAGTACAAAGTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGACTCCTAAATGCCAATGAGAATTCTGCCAGTACAAAGTGAGT  750

seq1  AATGTTGTGGGTTCCTGCCCCTGGAACCAGCCCCAAGTCAACTGTGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTGGGTTCCTGCCCCTGGAACCAGCCCCAAGTCAACTGTGGTTC  800

seq1  CAACACTAGACAGATGGCTGGAGTGGATCTTGTGAACATTCACCCCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAGACAGATGGCTGGAGTGGATCTTGTGAACATTCACCCCACAT  850

seq1  TACTTCAGTACATAGCTAGTACCTTTGTATTTTAGTTTCCTTATAAATAC  900
      |||||||||||||||||||||||||||||||||||||  | |||||||||
seq2  TACTTCAGTACATAGCTAGTACCTTTGTATTTTAGTT--CCTATAAATAC  898

seq1  TTTTAGCAGAGTTTATTTTTTGCACAGAAACGAGTCCTGTTAGAAAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCAGAGTTTATTTTTTGCACAGAAACGAGTCCTGTTAGAAAGAAG  948

seq1  CAGGTCAGAAGTTTCAAGGGAGGCATTTGGCCAGAGTTAGTAATGAAAGT  1000
      || ||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  CATGTCAG-AGTTTCAAGGGAGGCATTTGGCCAGAG-TAGTAATGAAAGT  996

seq1  TGTCTGTGGTTGGCCAGCAAAGGCCAAGCCAGAAGCCTTGACCCAGCTGT  1050
      |  |||||  |||||||| ||||||||| ||| |||||||||||||||||
seq2  TTGCTGTG--TGGCCAGC-AAGGCCAAG-CAG-AGCCTTGACCCAGCTGT  1041

seq1  GATAGTTCAGAACTACAATTTATATTCTTCAGTGTGTTTAGCCAATATTT  1100
      ||||||||  ||||| ||||   |||| |||  |||| |||||||  | |
seq2  GATAGTTC-CAACTA-AATTATAATTCCTCACGGTGTGTAGCCAAATTAT  1089

seq1  ATTACAGCTTTA  1112
      ||||||||||||
seq2  ATTACAGCTTTA  1101