BAC Information

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BAC

Clone NameB6Ng01-159O03
ChromosomeX (Build37)12 (Build37)
Map Location 20,591,265 - 20,591,40297,595,862 - 97,596,973
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChst7, Slc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik
Downstream geneZfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268, EG629024, EG331392, Agtr2, EG668997, Slc6a14, LOC100043180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159O03.bB6Ng01-159O03.g
ACCDH953416DH953417
length1,0301,090
definitionDH953416|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O03, 5' end.DH953417|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,591,265 - 20,591,402)(97,595,862 - 97,596,973)
sequence
gaattcattatttcatttattttatcccaaatgttgttctctcttcccag
tcctccctcaaagagttcttctgctatccccattcccatttgcctctgag
agggttccctttcctgggtatacactcccttctatggaggccaaaaagga
cagtcctctgctacataggtgccccaggcattggaccaaccaatatatac
tctgtggttgttaactaagtctctgggagcttccagggattcaagctatt
tgacactatatcttttgggtatctgcttaggagtggcataggtaaaagta
ctccaaattttctggaaaaccatcaaattgatttctaaagtgcctgtaca
agtttgaacttccaccagcaaggaacaagtaatttcttcgctcctcattc
ttgccaacatgtgttatcttttgagttttttatcttacccactctgatgg
gtgttagatggaacctcagggttgtttccctgatgactaaggactttgaa
aatctctttaattgcttcttgaccatttgagattccactgttgagaattc
tctcttttaagccaggcatggtggcacatgcctttagtcccagcacttgg
gaggcagacgcaggtgaacttctgagttcgaggccaccctggtctacaga
atgagttacaggacagccagagctacacagagaaaccctgtctcaaaaaa
aatacctcacaccagtcagaatggctaagatcaaaaactcatgtgacagc
agatgctggcgaggatgtggaaaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcaatctggcagttcctca
gaaaattggacatagtactacaggaggatccagcataccactactgagca
tatatccagaagatgttccaattggtaagaagacacatgctccactatgt
catagcagccttatttatatagccagaagctggaaagaacccagatgctc
ctcacagagaatggatacagaaaatgtggt
gaattcaaagaaagttccaggccatcaagagctatacagtaagactcaaa
aacccaataatagatagatagaaaaatagaaagatagatagatagataga
tagatagatagatagatagagaagtagatagaatttccaaaatattataa
tataaattccattgattccaaatattatataaatagaattttactaattt
taagttatttgaaaattctactttataaattatacctgttgtgattttgc
cacacttatttattatactttgaaacacatatttgatgcttaagtagata
tatcacatgtaaattatactgagttgattcttctaatggaggagtttaat
tttctttcatgtgttggtgtgatttttttcatgtataatgtatgtatgtt
tgggccctaagtgcatgtgtatgtctctgcatgcacatgtcattgagaga
aacacattgtaggatgttaactttttgccatctagagatgtgtttaaagt
cacaaatgtcattttattatatgaaactaaacctctattagctaatcttt
ataggtaaagccagtactgcaagtcacatactgcatatccaacatcattg
ttatttccttatggactttcatagttttcccatataatctttataagaaa
tacaacaagtcctgttgcatcaacctaaagaacttgtacagaatggatga
ggatggtggatacactaaaaacacagaatagagtttaatgaatggcatgc
atctgtgtatggttataagacctctgtttcactattatacatataatagt
ttgaatttactgaatttaaaatgaaatttattcaattttttctcacatcc
aaacacatgatgagaaaacagcatttgagttgaactcatacccactcttt
tacattaggtctcctcatcataaccctttccctactctgttaagcaccaa
aaccaacattaccatgacaccacctagcataccattgccattgtacaaag
tgctgactgatcattttaccatcttacagggcgcagcgcgcagcagcgag
atctttgtgaaactcaaaatacatggtgctactgaagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_20591265_20591402
seq2: B6Ng01-159O03.b_944_1076

seq1  GCATATACCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACT  50
      ||||||| |||||||||||||||| |||||| || |||||||||||||||
seq2  GCATATATCCAGAAGATGTTCCAATTGGTAAGAA-GACACATGCTCCACT  49

seq1  ATGTTCATAGCAGCCTTATTTATAATAGCCAGAATCTGGAAAGAACCCAG  100
      ||| ||||||||||||||||||| |||||||||| |||||||||||||||
seq2  ATG-TCATAGCAGCCTTATTTAT-ATAGCCAGAAGCTGGAAAGAACCCAG  97

seq1  ATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGT  138
      |||  |||| ||||| ||||||||||||||||||||||
seq2  ATGCTCCTC-ACAGA-GAATGGATACAGAAAATGTGGT  133

seq1: chr12_97595862_97596973
seq2: B6Ng01-159O03.g_65_1154

seq1  GAATTCAAAGAAAGTTCCAGGCCATCAAGAGCTATACAGTAAGACTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAAGTTCCAGGCCATCAAGAGCTATACAGTAAGACTCAAA  50

seq1  AACCCAATAATAGATAGATAGAAAAATAGAAAGATAGATAGATAGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAATAATAGATAGATAGAAAAATAGAAAGATAGATAGATAGATAGA  100

seq1  TAGATAGATAGATAGATAGAGAAGTAGATAGAATTTCCAAAATATTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGAGAAGTAGATAGAATTTCCAAAATATTATAA  150

seq1  TATAAATTCCATTGATTCCAAATATTATATAAATAGAATTTTACTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTCCATTGATTCCAAATATTATATAAATAGAATTTTACTAATTT  200

seq1  TAAGTTATTTGAAAATTCTACTTTATAAATTATACCTGTTGTGATTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATTTGAAAATTCTACTTTATAAATTATACCTGTTGTGATTTTGC  250

seq1  CACACTTATTTATTATACTTTGAAACACATATTTGATGCTTAAGTAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTATTTATTATACTTTGAAACACATATTTGATGCTTAAGTAGATA  300

seq1  TATCACATGTAAATTATACTGAGTTGATTCTTCTAATGGAGGAGTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATGTAAATTATACTGAGTTGATTCTTCTAATGGAGGAGTTTAAT  350

seq1  TTTCTTTCATGTGTTGGTGTGATTTTTTTCATGTATAATGTATGTATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCATGTGTTGGTGTGATTTTTTTCATGTATAATGTATGTATGTT  400

seq1  TGGGCCCTAAGTGCATGTGTATGTCTCTGCATGCACATGTCATTGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCTAAGTGCATGTGTATGTCTCTGCATGCACATGTCATTGAGAGA  450

seq1  AACACATTGTAGGATGTTAACTTTTTGCCATCTAGAGATGTGTTTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTGTAGGATGTTAACTTTTTGCCATCTAGAGATGTGTTTAAAGT  500

seq1  CACAAATGTCATTTTATTATATGAAACTAAACCTCTATTAGCTAATCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTCATTTTATTATATGAAACTAAACCTCTATTAGCTAATCTTT  550

seq1  ATAGGTAAAGCCAGTACTGCAAGTCACATACTGCATATCCAACATCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAAAGCCAGTACTGCAAGTCACATACTGCATATCCAACATCATTG  600

seq1  TTATTTCCTTATGGACTTTCATAGTTTTCCCATATAATCTTTATAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTTATGGACTTTCATAGTTTTCCCATATAATCTTTATAAGAAA  650

seq1  TACAACAAGTCCTGTTGCATCAACCTAAAGAACTTGTACAGAATGGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAAGTCCTGTTGCATCAACCTAAAGAACTTGTACAGAATGGATGA  700

seq1  GGATGGTGGATACACTAAAAACACAGAATAGAGTTTAATGAATGGCATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGGATACACTAAAAACACAGAATAGAGTTTAATGAATGGCATGC  750

seq1  ATCTGTGTATGGTTATAAGACCTCTGTTTCACTATTATACATATAATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTATGGTTATAAGACCTCTGTTTCACTATTATACATATAATAGT  800

seq1  TTGAATTTACTGAATTTAAAATGAAATTTATTCAATTTTTTTCTCACATC  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGAATTTACTGAATTTAAAATGAAATTTATTCAA-TTTTTTCTCACATC  849

seq1  CAAACACATGATGAGAAAACAGCATTTGAGTTGAACTCATACCCACTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACATGATGAGAAAACAGCATTTGAGTTGAACTCATACCCACTCTT  899

seq1  TTACATTAGGGTCTCCTCATCATAACCCTTTCCCTACTCTGATACAGCAC  950
      |||||||| |||||||||||||||||||||||||||||||| || |||||
seq2  TTACATTA-GGTCTCCTCATCATAACCCTTTCCCTACTCTGTTA-AGCAC  947

seq1  CAAAAACCAACACTACCATGACCACAACCTAGCATCACCATTGCCATTGT  1000
      | |||||||||| |||||||| ||| ||||||||| ||||||||||||||
seq2  C-AAAACCAACATTACCATGA-CACCACCTAGCAT-ACCATTGCCATTGT  994

seq1  TAACATAGTTGCTAACATGATCATTATCACCATCATCACCAGCAGCAGCA  1050
        ||| || |||| || |||||||| | |||||| | ||  |  ||||| 
seq2  --ACAAAG-TGCTGAC-TGATCATT-TTACCATC-TTACAGGGCGCAGC-  1037

seq1  GCAGCAGCAGCAGCAGCAGCATCTTTGTGAATACTCAAAATAGCATGTGT  1100
            || ||||||||   ||||||||||| |||||||||| ||||   
seq2  ------GC-GCAGCAGCGAGATCTTTGTGAA-ACTCAAAATA-CATGGTG  1078

seq1  CTACTGAAGGGT  1112
      ||||||||||||
seq2  CTACTGAAGGGT  1090