BAC Information

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BAC

Clone NameB6Ng01-159O19
Chromosome12 (Build37)
Map Location 100,675,001 - 100,812,764
singlet/doubletdoublet
Overlap geneChes1, LOC100039892
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159O19.bB6Ng01-159O19.g
ACCDH953448DH953449
length1,126962
definitionDH953448|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O19, 5' end.DH953449|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,675,001 - 100,676,130)(100,811,805 - 100,812,764)
sequence
gaattctctgtctgtatgtacacctacatgctgggaagacatcagatctc
tttataggtgtggttgtgagcccccatgtggttgctgggaaatgaactca
gcacctctggaagggcagccagtgctcctaaccactgaaccatctctcca
tccccagatgaccaactttaagaatcacaggtgataggaacatcccacat
gctttggctttctgtggctatgatcatacatgaccaaaagtaatttgagg
agtagagggtttattatatcatatacttccaggtcacaggttacagtaca
tcttatagaatagtcaagcaggaactcagggtaataacttggaggcaaga
agcatggaagaaccctgcttgctgacttgtttcctcagttcacgttcatc
gagctttcttatacaacctaggacagcctccccagtgttggcatcgccca
cagtgggctgggacctcttatatcaatcaacagttaggacaatacctccc
ccccgacacacacacacaacttgccacaggccactcatatggtcaaattc
tgaagactccctcttcctacatgactcttggttgttatcaagttgacaat
gaaaaataaccagggtgtcttgatctagaaatgagaccaagaataacatg
gaatatggtccttgatggaccattcacagcaaataaatagagtgtgcaag
acagaaaactttcttattttatactactgaatttggggcattgccatgtg
caccatgtgaccgtcaggaagtgactgtctttcaaatgagaaattctctg
tgacatgctcaacagcatggatagagactatgtagccctagggttccagt
gccaagaatttagctgttcattaaaggtgtgagtataattttaattagga
atagttaaatccatttcaaaaggcagatcatgaaacttcctaatacctgc
cctatgaggcttatactatcgagctgaccgaggagatcaatcccgatgag
gagtccagccctcaccacctgctcagggggtgagtccactctctgagagt
gaagggcgaagtctctcaaccccaattctgaggctgaagaagttccatgg
gggttgctttcctccccccctctctc
gaattcagcggaagacaagggtggaaccgagtgaggtagggagaggggtg
gggcactcttctcaattctgcctgcgggtgtggccacccttttccccaag
ccacaggctctctgcacaatgggacgcagaggaattcagaatgaatagcg
gcagcctttctttggaacctgtgctccaattctcttctctccaacctgct
ttcatttgatagcacaggcgttcgctcctgggcctatgttcatggccgct
aacgcgggtataatgaagaggattagtgctatcttcacttctttgttttg
tttaaaaaaaaaaaaaaaagattccatttctgagtttaacttgctgggag
aatatgaaaacctgcattccagggtttggttttgtttttttaatcaagga
aggttcgaaggttcgtgttttctcaatctttgaaggaatctttgaaagaa
gagctctttgctctttgaaacaagaagatctgcttcacattgaaagtttc
tcattgtcaagttcaatgtcagggggaagagtcaatgggtgaattataag
cgctcactcgctcgctcgccacaatgggaagggatttctacatggcagag
agagggggtgaatgaaagcccaaatgaagtaagtctgcgctgtttcttct
ccataaaaacacggagtcagtgacaatttcactctaactatgggagtctt
tccattctgctcaccgtggtcaccgctgctgtttctttctttggccaatc
tctcctgcactgcttctttaaaatcatagaggaggccacgtgcacctact
cggagcatgcccatttatcacgcaggaaggtacgagagatgaaacttgct
cttgtcttcaggtgggttcatttaaggtcagtgaccaagtaatattagtg
caagctcattttgtggtcgcagacgggcccaaggaactgggggagggttg
tggtcccatcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100675001_100676130
seq2: B6Ng01-159O19.b_51_1176

seq1  GAATTCTCTGTCTGTATGTACACCTACATGCTGGGAAGACATCAGATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTCTGTATGTACACCTACATGCTGGGAAGACATCAGATCTC  50

seq1  TTTATAGGTGTGGTTGTGAGCCCCCATGTGGTTGCTGGGAAATGAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGGTGTGGTTGTGAGCCCCCATGTGGTTGCTGGGAAATGAACTCA  100

seq1  GCACCTCTGGAAGGGCAGCCAGTGCTCCTAACCACTGAACCATCTCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCTGGAAGGGCAGCCAGTGCTCCTAACCACTGAACCATCTCTCCA  150

seq1  TCCCCAGATGACCAACTTTAAGAATCACAGGTGATAGGAACATCCCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGATGACCAACTTTAAGAATCACAGGTGATAGGAACATCCCACAT  200

seq1  GCTTTGGCTTTCTGTGGCTATGATCATACATGACCAAAAGTAATTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCTTTCTGTGGCTATGATCATACATGACCAAAAGTAATTTGAGG  250

seq1  AGTAGAGGGTTTATTATATCATATACTTCCAGGTCACAGGTTACAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGGGTTTATTATATCATATACTTCCAGGTCACAGGTTACAGTACA  300

seq1  TCTTATAGAATAGTCAAGCAGGAACTCAGGGTAATAACTTGGAGGCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAGAATAGTCAAGCAGGAACTCAGGGTAATAACTTGGAGGCAAGA  350

seq1  AGCATGGAAGAACCCTGCTTGCTGACTTGTTTCCTCAGTTCACGTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGAAGAACCCTGCTTGCTGACTTGTTTCCTCAGTTCACGTTCATC  400

seq1  GAGCTTTCTTATACAACCTAGGACAGCCTCCCCAGTGTTGGCATCGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCTTATACAACCTAGGACAGCCTCCCCAGTGTTGGCATCGCCCA  450

seq1  CAGTGGGCTGGGACCTCTTATATCAATCAACAGTTAGGACAATACCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCTGGGACCTCTTATATCAATCAACAGTTAGGACAATACCTCCC  500

seq1  CCCCGACACACACACACAACTTGCCACAGGCCACTCATATGGTCAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGACACACACACACAACTTGCCACAGGCCACTCATATGGTCAAATTC  550

seq1  TGAAGACTCCCTCTTCCTACATGACTCTTGGTTGTTATCAAGTTGACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCCCTCTTCCTACATGACTCTTGGTTGTTATCAAGTTGACAAT  600

seq1  GAAAAATAACCAGGGTGTCTTGATCTAGAAATGAGACCAAGAATAACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAACCAGGGTGTCTTGATCTAGAAATGAGACCAAGAATAACATG  650

seq1  GAATATGGTCCTTGATGGACCATTCACAGCAAATAAATAGAGTGTGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGGTCCTTGATGGACCATTCACAGCAAATAAATAGAGTGTGCAAG  700

seq1  ACAGAAAACTTTCTTATTTTATACTACTGAATTTGGGGCATTGCCATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACTTTCTTATTTTATACTACTGAATTTGGGGCATTGCCATGTG  750

seq1  CACCATGTGACCGTCAGGAAGTGACTGTCTTTCAAATGAGAAATTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGACCGTCAGGAAGTGACTGTCTTTCAAATGAGAAATTCTCTG  800

seq1  TGACATGCTCAACAGCATGGATAGAGACTATGTAGCCCTAGGGTTCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGCTCAACAGCATGGATAGAGACTATGTAGCCCTAGGGTTCCAGT  850

seq1  GCCAAGAATTTAGCTGTTCATTAAAGGTGTGAGTATAATTTTAATTAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAATTTAGCTGTTCATTAAAGGTGTGAGTATAATTTTAATTAGGA  900

seq1  ATAGTTAAATCCATTTCAAAAGGCAGATCATGAAAC-TCCTAATACCTGC  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAGTTAAATCCATTTCAAAAGGCAGATCATGAAACTTCCTAATACCTGC  950

seq1  CCTATGAGGCTTATACTACCGAGCTGAGCGAGGACATCAATCCAGATGA-  998
      |||||||||||||||||| |||||||| |||||| |||||||| ||||| 
seq2  CCTATGAGGCTTATACTATCGAGCTGACCGAGGAGATCAATCCCGATGAG  1000

seq1  GAGTCCAGCCATCACAACCTGCTCAGGGTGTGAAGTCCACTC-GTGAGAG  1047
      |||||||||| |||| |||||||||||| ||| |||||||||  ||||||
seq2  GAGTCCAGCCCTCACCACCTGCTCAGGGGGTG-AGTCCACTCTCTGAGAG  1049

seq1  TGAAGGGCATAAGTCTCACAAACCCCAATTCTGAGGCTGAAAGTTGTCTC  1097
      ||||||||  ||||||| | ||||||||||||||||||| |||  || ||
seq2  TGAAGGGC-GAAGTCTCTC-AACCCCAATTCTGAGGCTG-AAGAAGT-TC  1095

seq1  CATGGGGGCTTTCCTTCCCTCCCTCCCTCTCTC  1130
      ||||||||  || ||| |||||| |||||||||
seq2  CATGGGGG--TTGCTTTCCTCCCCCCCTCTCTC  1126

seq1: chr12_100811805_100812764
seq2: B6Ng01-159O19.g_68_1029 (reverse)

seq1  GCGATGGGACCACACACCTCCCCAGCTCCCTTGGGGCCGTCTGCGACCAC  50
      ||||||||||||||  |||||||   | ||||||| ||||||||||||||
seq2  GCGATGGGACCACAACCCTCCCCCAGTTCCTTGGGCCCGTCTGCGACCAC  50

seq1  AAAATGAGCTTGCACTACTTTACCTTGGTCACTGACCCTAAATGAACCCA  100
      ||||||||||||||||| | |  |||||||||||||| ||||||||||||
seq2  AAAATGAGCTTGCACTAATATTACTTGGTCACTGACCTTAAATGAACCCA  100

seq1  CCTG-AGACAAGAGCAAGTTTCATCTCTCGTACCTTCCTGCGTGGATAAA  149
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTGAAGACAAGAGCAAGTTTCATCTCTCGTACCTTCCTGCGT-GATAAA  149

seq1  TGGGCCTGCTCCGAGTAGGTGCACGTGGCCTCCTCTATGATTTTAAAGAA  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGCTCCGAGTAGGTGCACGTGGCCTCCTCTATGATTTTAAAGAA  199

seq1  GCAGTGCAGGAGAGATTTGGCCAAAGAAAGAAACAGCAGCGGTGACCACG  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAGGAGAGA-TTGGCCAAAGAAAGAAACAGCAGCGGTGACCACG  248

seq1  GTGAGCAGAATGGAAAGACTCCCATAGTTAGAGTG-AATTGTCACTGACT  298
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGAGCAGAATGGAAAGACTCCCATAGTTAGAGTGAAATTGTCACTGACT  298

seq1  CCGTGTTTTTATGGAGAAGAAACAGCGCAGACTTACTTCATTTGGGC-TT  347
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCGTGTTTTTATGGAGAAGAAACAGCGCAGACTTACTTCATTTGGGCTTT  348

seq1  CATTCACCCCCTCTCTCTGCCATGTAGAAATCCCTTCCCATTGTGGCGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACCCCCTCTCTCTGCCATGTAGAAATCCCTTCCCATTGTGGCGAG  398

seq1  CGAGCGAGTGAGCGCTTATAATTCACCCATTGACTCTT-CCCCTGACATT  446
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CGAGCGAGTGAGCGCTTATAATTCACCCATTGACTCTTCCCCCTGACATT  448

seq1  GAACTTGACAATGAGAAACTTTCAATGTGAAGCAGATCTTCTTGTTTCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGACAATGAGAAACTTTCAATGTGAAGCAGATCTTCTTGTTTCAA  498

seq1  AGAGCAAAGAGCTCTTCTTTCAAAGATTCCTTCAAAGATTGAGAAAACAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAGAGCTCTTCTTTCAAAGATTCCTTCAAAGATTGAGAAAACAC  548

seq1  GAACCTTCGAACCTTCCTTGATTAAAAAAACAAAACCAAACCCTGGAATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCGAACCTTCCTTGATTAAAAAAACAAAACCAAACCCTGGAATG  598

seq1  CAGGTTTTCATATTCTCCCAGCAAGTTAAACTCAGAAATGGAATCTTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTCATATTCTCCCAGCAAGTTAAACTCAGAAATGGAATCTTTTT  648

seq1  TTTTTTTTTTTAAACAAAACAAAGAAGTGAAGATAGCACTAATCCTCTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAAACAAAACAAAGAAGTGAAGATAGCACTAATCCTCTTC  698

seq1  ATTATACCCGCGTTAGCGGCCATGAACATAGGCCCAGGAGCGAACGCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCCGCGTTAGCGGCCATGAACATAGGCCCAGGAGCGAACGCCTG  748

seq1  TGCTATCAAATGAAAGCAGGTTGGAGAGAAGAGAATTGGAGCACAGGTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCAAATGAAAGCAGGTTGGAGAGAAGAGAATTGGAGCACAGGTTC  798

seq1  CAAAGAAAGGCTGCCGCTATTCATTCTGAATTCCTCTGCGTCCCATTGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGGCTGCCGCTATTCATTCTGAATTCCTCTGCGTCCCATTGTG  848

seq1  CAGAGAGCCTGTGGCTTGGGGAAAAGGGTGGCCACACCCGCAGGCAGAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCTGTGGCTTGGGGAAAAGGGTGGCCACACCCGCAGGCAGAAT  898

seq1  TGAGAAGAGTGCCCCACCCCTCTCCCTACCTCACTCGGTTCCACCCTTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAGTGCCCCACCCCTCTCCCTACCTCACTCGGTTCCACCCTTGT  948

seq1  CTTCCGCTGAATTC  960
      ||||||||||||||
seq2  CTTCCGCTGAATTC  962