BAC Information

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BAC

Clone NameB6Ng01-160D03
Chromosome12 (Build37)
Map Location 101,325,908 - 101,420,979
singlet/doubletdoublet
Overlap genePsmc1, BC002230
Upstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13
Downstream geneCalm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160D03.bB6Ng01-160D03.g
ACCDH953638DH953639
length1,1621,089
definitionDH953638|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D03, 5' end.DH953639|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,419,794 - 101,420,979)(101,325,908 - 101,327,005)
sequence
gaattcttttaagaaccaaggcacttaagtgagatctttttcataaaatg
tttttttataaaatttagtactgtctgtttcaaagtcggcttattacctt
gagagattaattttatgaagagactaagtatcgagttctttatcagggag
tttctttgtattcctcccctcctgcatttgctgaattttgctgtagaaag
gctgataaggaggaacatggtcctccaggtcttcctgtgtaaataagtcg
tgattttctgtgaaatgtgtgtgctaacgggcacagagaaagaatggaag
ctatcattttggaattattttctaattttctaaaataatttgcaatgggg
gccagagaggtggctcaatgggcaaaagcactgtactaccctaatagcct
gtggaacctacaatgggattaaggcctgtctccctcaagttgtcctctga
cctccacacatgtgaaacacacacacacacacttgtgcaccaaatagaca
catgttaaaacaaaacaaaacaaaacaaaacatcgtatacagccaattgt
attggcatttgccagtaatccagtgctctgaggctgagacaggaggcttg
ccattagtttaaggccagcctggagatcctgtctccaaaaacggggaaaa
aaaattgccaggcagtggtggcgcacgactttaatcccagcatttgggag
gcagagacagccggatttcttagtttgaggacagcctggtctacaaagtg
agttccaggacagccagggctatacagagaaatcctgtctcaaagaaaaa
aacaaacaaaacaaaaacaaaccaaccaaacaaacaaatcatgttcaaag
taaacaagggtgaaagaaaacaatgttagattctagatttatccaccatg
cccccaccacacatcacctcaatcctctcagatgaggaaagattgaaaag
tccttctcatcgagcctccagacctctgtatttgtgtcattgagtatcct
tatacaaaaagtcctatgagacctaaactagcacctggattattttacta
ttcctgtccaccctgtcctgatttcccccagtctgctagaagtggccttc
tgctctaatgcactcagaatatataattgtgatgctcgagtcacataccc
ctcataatgtac
gaattctctctggaaacttaaggaggggagctcacacggagcagctcagg
tcttgggataaccattggactcatcccataaacaagatgccccaggggac
agagtctgaaaaggaggactggcgccattttctcccagttgttcactttt
taaataattcattgggtgggtgcctatggtctcgggagactaaaacagac
tattggtaaactgaagcaggcagccactcagcatggcctcctctcctgtc
catcccaatccacccagaagtctgagggtccttctgggccctccttccct
tcgctcatccctatccagtcaggcaccaggtctgtggtgcacactggtgt
gtgaatagaagggcctgacagatcccaaagaaagatctggcttttaccca
gctccctggagatagcctctaaaccccggcaatgcactgcctgctaagag
tgtccgtgtttatcaggagccttgggccatccagacactttatgctgcca
acacaagtaacagcaaaggtcttgggccatgcagcatttgccagagttcc
caggaggacaatagctgaatatctcacaagtcatatgggtgaccaagggc
ctgtaaccaacctgtaataaacaccctgaatgtcaaggttcatctgacca
gctctgcacatattgtcacacatcattgatgagagaagcaatgtgggact
cctctaggacaggaccctgaaagcacgcatctggcactgtatgtaccgcc
cccttatgcatcgctggcttttgcaggttttaatctttcctgtctgggta
ataagctacaactgtgagttcatcggctcttgtgagttctgtgagccctt
cccacaaagcactgatcctcaagacggtcttggggacaaagcccttgtgt
agtagacacccacttttcttgtatgtgggtgggctgtcttctgcactgca
tcctgagctctgagtcagtgggtcctgtcagtctgctttctggagcactc
ggtctgggacagtacactgcggcatctcagaagttgccgctgactgctct
gatgggacaacacactcagcaccaatgatctcgaccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101419794_101420979
seq2: B6Ng01-160D03.b_44_1205 (reverse)

seq1  GTACATTATGAAGAAGATAATGTGACTCGAGCAT--CAATTATAATATCT  48
      ||||||||||| |  | | |||||||||||||||  ||||||||   |||
seq2  GTACATTATGAGG--GGT-ATGTGACTCGAGCATCACAATTATATATTCT  47

seq1  GA-TGCATATGGAGCAGAAAG-CACTTCTAGCCAGAACTGTGGGGAAATC  96
      || ||||| | |||||||| | ||||||||| ||| |||| |||||||||
seq2  GAGTGCAT-TAGAGCAGAAGGCCACTTCTAG-CAG-ACTG-GGGGAAATC  93

seq1  AAGAACAGGTGGACAGGATTAGTAAAATAAATCCAAGGTGCTAGTTTTAG  146
      | ||   ||||||||||| ||||||||| ||||| ||||||||| |||||
seq2  AGGACAGGGTGGACAGGAATAGTAAAAT-AATCC-AGGTGCTAG-TTTAG  140

seq1  GTCCTCATAGGACTTTTTTTGTATTAAGGATTACTCAATGGACACAAATA  196
      || ||||||||||  |||||||| |||||| |||||||| ||||||||||
seq2  GT-CTCATAGGAC--TTTTTGTA-TAAGGA-TACTCAAT-GACACAAATA  184

seq1  CAGAGGTCTTGGAGGCTCGATTGAGGAAGGACTTTTTCAATCTTTCCTCA  246
      |||||||| ||||||||||| ||| ||||||| |||||||||||||||||
seq2  CAGAGGTC-TGGAGGCTCGA-TGA-GAAGGAC-TTTTCAATCTTTCCTCA  230

seq1  TCTGAGAGGATTGAGGTGATGTGTGGTGGGGGCATGGTGGATAAATCTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGGATTGAGGTGATGTGTGGTGGGGGCATGGTGGATAAATCTAG  280

seq1  AATCTAACATTGTTTTTCTTTCACCCTTGTTTTACTTTTGAACATGATTT  346
      |||||||||||| |||||||||||||||| ||||| ||||||||||| ||
seq2  AATCTAACATTG-TTTTCTTTCACCCTTG-TTTAC-TTTGAACATGA-TT  326

seq1  TGTTTGTTTGGTTGGTTTTGTTTTTTGTTTTTGTTTTGTTTTTTTCTTTG  396
      ||||||||||||||||||   ||||||||||   ||||||||||||||||
seq2  TGTTTGTTTGGTTGGTTT--GTTTTTGTTTT--GTTTGTTTTTTTCTTTG  372

seq1  AGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAG  422

seq1  ACCAGGCTGTCCTCAAACTAAGAAATCCGGCTGTCTCTGCCTCCCAAATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGTCCTCAAACTAAGAAATCCGGCTGTCTCTGCCTCCCAAATG  472

seq1  CTGGGATTAAAGTCGTGCGCCACCACTGCCTGGCAATTTTTTTTCCCCGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTAAAGTCGTGCGCCACCACTGCCTGGCAATTTTTTTTCCCCGT  522

seq1  TTTTGGAGACAGGATCTCCAGGCTGGCCTTAAACTAATGGCAAGCCTCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGACAGGATCTCCAGGCTGGCCTTAAACTAATGGCAAGCCTCCT  572

seq1  GTCTCAGCCTCAGAGCACTGGATTACTGGCAAATGCCAATACAATTGGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCCTCAGAGCACTGGATTACTGGCAAATGCCAATACAATTGGCT  622

seq1  GTATACGATGTTTTGTTTTGTTTTGTTTTGTTTTAACATGTGTCTATTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACGATGTTTTGTTTTGTTTTGTTTTGTTTTAACATGTGTCTATTTG  672

seq1  GTGCACAAGTGTGTGTGTGTGTGTTTCACATGTGTGGAGGTCAGAGGACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAAGTGTGTGTGTGTGTGTTTCACATGTGTGGAGGTCAGAGGACA  722

seq1  ACTTGAGGGAGACAGGCCTTAATCCCATTGTAGGTTCCACAGGCTATTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGGGAGACAGGCCTTAATCCCATTGTAGGTTCCACAGGCTATTAG  772

seq1  GGTAGTACAGTGCTTTTGCCCATTGAGCCACCTCTCTGGCCCCCATTGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTACAGTGCTTTTGCCCATTGAGCCACCTCTCTGGCCCCCATTGCA  822

seq1  AATTATTTTAGAAAATTAGAAAATAATTCCAAAATGATAGCTTCCATTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTAGAAAATTAGAAAATAATTCCAAAATGATAGCTTCCATTCT  872

seq1  TTCTCTGTGCCCGTTAGCACACACATTTCACAGAAAATCACGACTTATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGCCCGTTAGCACACACATTTCACAGAAAATCACGACTTATTT  922

seq1  ACACAGGAAGACCTGGAGGACCATGTTCCTCCTTATCAGCCTTTCTACAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAAGACCTGGAGGACCATGTTCCTCCTTATCAGCCTTTCTACAG  972

seq1  CAAAATTCAGCAAATGCAGGAGGGGAGGAATACAAAGAAACTCCCTGATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCAGCAAATGCAGGAGGGGAGGAATACAAAGAAACTCCCTGATA  1022

seq1  AAGAACTCGATACTTAGTCTCTTCATAAAATTAATCTCTCAAGGTAATAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCGATACTTAGTCTCTTCATAAAATTAATCTCTCAAGGTAATAA  1072

seq1  GCCGACTTTGAAACAGACAGTACTAAATTTTATAAAAAAACATTTTATGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTTTGAAACAGACAGTACTAAATTTTATAAAAAAACATTTTATGA  1122

seq1  AAAAGATCTCACTTAAGTGCCTTGGTTCTTAAAAGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCTCACTTAAGTGCCTTGGTTCTTAAAAGAATTC  1162

seq1: chr12_101325908_101327005
seq2: B6Ng01-160D03.g_65_1153

seq1  GAATTCTCTCTGGAAACTTAAGGAGGGGAGCTCACACGGAGCAGCTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGGAAACTTAAGGAGGGGAGCTCACACGGAGCAGCTCAGG  50

seq1  TCTTGGGATAACCATTGGACTCATCCCATAAACAAGATGCCCCAGGGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGATAACCATTGGACTCATCCCATAAACAAGATGCCCCAGGGGAC  100

seq1  AGAGTCTGAAAAGGAGGACTGGCGCCATTTTCTCCCAGTTGTTCACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGAAAAGGAGGACTGGCGCCATTTTCTCCCAGTTGTTCACTTTT  150

seq1  TAAATAATTCATTGGGTGGGTGCCTATGGTCTCGGGAGACTAAAACAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTCATTGGGTGGGTGCCTATGGTCTCGGGAGACTAAAACAGAC  200

seq1  TATTGGTAAACTGAAGCAGGCAGCCACTCAGCATGGCCTCCTCTCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTAAACTGAAGCAGGCAGCCACTCAGCATGGCCTCCTCTCCTGTC  250

seq1  CATCCCAATCCACCCAGAAGTCTGAGGGTCCTTCTGGGCCCTCCTTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAATCCACCCAGAAGTCTGAGGGTCCTTCTGGGCCCTCCTTCCCT  300

seq1  TCGCTCATCCCTATCCAGTCAGGCACCAGGTCTGTGGTGCACACTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCATCCCTATCCAGTCAGGCACCAGGTCTGTGGTGCACACTGGTGT  350

seq1  GTGAATAGAAGGGCCTGACAGATCCCAAAGAAAGATCTGGCTTTTACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGAAGGGCCTGACAGATCCCAAAGAAAGATCTGGCTTTTACCCA  400

seq1  GCTCCCTGGAGATAGCCTCTAAACCCCGGCAATGCACTGCCTGCTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGGAGATAGCCTCTAAACCCCGGCAATGCACTGCCTGCTAAGAG  450

seq1  TGTCCGTGTTTATCAGGAGCCTTGGGCCATCCAGACACTTTATGCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTGTTTATCAGGAGCCTTGGGCCATCCAGACACTTTATGCTGCCA  500

seq1  ACACAAGTAACAGCAAAGGTCTTGGGCCATGCAGCATTTGCCAGAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTAACAGCAAAGGTCTTGGGCCATGCAGCATTTGCCAGAGTTCC  550

seq1  CAGGAGGACAATAGCTGAATATCTCACAAGTCATATGGGTGACCAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGACAATAGCTGAATATCTCACAAGTCATATGGGTGACCAAGGGC  600

seq1  CTGTAACCAACCTGTAATAAACACCCTGAATGTCAAGGTTCATCTGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCAACCTGTAATAAACACCCTGAATGTCAAGGTTCATCTGACCA  650

seq1  GCTCTGCACATATTGTCACACATCATTGATGAGAGAAGCAATGTGGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCACATATTGTCACACATCATTGATGAGAGAAGCAATGTGGGACT  700

seq1  CCTCTAGGACAGGACCCTGAAAGCACGCATCTGGCACTGTATGTACCGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGGACAGGACCCTGAAAGCACGCATCTGGCACTGTATGTACCGCC  750

seq1  CCCTTATGCATCGCTGGCTTTTGCAGGTTTTAATCTTTCCTGTCTGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATGCATCGCTGGCTTTTGCAGGTTTTAATCTTTCCTGTCTGGGTA  800

seq1  ATAAGCTACAACTGTGAGTTCATCGGCTCTTGTGAGTTCTGTGAGCCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTACAACTGTGAGTTCATCGGCTCTTGTGAGTTCTGTGAGCCCTT  850

seq1  CCCACAAAGCACTGATCCTCAAGACGGTCTTGGGGACAAAGCCCTTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAGCACTGATCCTCAAGACGGTCTTGGGGACAAAGCCCTTGTGT  900

seq1  AGTAGACACCCACTTTCCTTGTATGTGGGTGGGCTGTCTCCTGCACTGCA  950
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AGTAGACACCCACTTTTCTTGTATGTGGGTGGGCTGTCTTCTGCACTGCA  950

seq1  TCCTGAGCTCTGAAGTCAAGGTGGGTCCTGTCCAGTCTTGCTTTCTGGGA  1000
      |||||||||||| |||||  ||||||||||| ||||| |||||||| |||
seq2  TCCTGAGCTCTG-AGTCA--GTGGGTCCTGT-CAGTC-TGCTTTCT-GGA  994

seq1  GCACTCGGTCTGGGGACAGTACACTGCGGGCATCTCAGAAAGGTGTGCCG  1050
      ||||||||||| ||||||||||||||| ||||||||||||  || |||||
seq2  GCACTCGGTCT-GGGACAGTACACTGC-GGCATCTCAGAA--GT-TGCCG  1039

seq1  CTTGAACTGCTCTGATGTGACAACACACTCAAGCACCAA--AT---GACC  1095
      ||   |||||||||||| |||||||||||| ||||||||  ||   ||||
seq2  CT--GACTGCTCTGATGGGACAACACACTC-AGCACCAATGATCTCGACC  1086

seq1  CTC  1098
      |||
seq2  CTC  1089