BAC Information

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BAC

Clone NameB6Ng01-160J10
Chromosome18 (Build37)12 (Build37)
Map Location 18,109,236 - 18,109,74932,824,765 - 32,825,848
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160J10.bB6Ng01-160J10.g
ACCDH953923DH953924
length9281,067
definitionDH953923|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J10, 5' end.DH953924|Mus musculus domesticus DNA, BAC clone: B6Ng01-160J10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,109,236 - 18,109,749)(32,824,765 - 32,825,848)
sequence
gaattcctgatctttccaagacttatatcatttaatgggtgttggatttt
ctcaaatgctttttctgcatctaaggagatgatcatgtggtttttgtctt
tgagtttgtttatatactggattatgttgatgaatttccatatattgaac
catccctgcatcccagggatgaaacctacttggtcaggatggatgattgt
tttgatgtgttcttggattcggttagcgagaactttattgaggatttttg
catcgatattcataagggaaattggtctgaagttctctgtctttgttggg
tctttttgtggtttaggtatcagagtaattgtggcttcatagaatgagtt
gggtagactaccttctacttctattttgtggaatagtttgtgtagaaccg
ggattagatcttctttgaagatctgatagaactctgcactaaacccatct
ggtcctgggctttttttggtatggagactattaatgactgcttctatttc
ttaggggatataggactgtttagatcattaacctgatcctgatttaactt
tggtacctggtatttgtctagaaacttgtccatttcatccaggttctcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
tagaatgctttccctgggccctctagtgagtctggctaagggtttgtcta
tcttgttgattttctcaaagaaccagctcctcgtttggttgattctttga
atagttcttcttgtttccacttggttgatttcgccccctgagtttgattt
atttcctgcatctactccctttgggtgaacttgcttccttttgttctaga
gcttacttttaggtgtgttgtcaagctg
gaattcactttggtccaagggctgacaagtccttctctctgaaatctcac
aggctcactcttgtctgtgttccagtgccaagcggatgccgatggctgga
tgtaccttacctaaactcataaagcatgtattctaaagatttattccatt
tgtatttatgtgtatgcgtgccacgtgagtgtgggtgcccgaggaggccg
gtagagggccttgggtcctctggagctggagttgttataggtggttgtga
ccctctggacctgggtgatgggaactgaactcagtcttttggaaaagtag
caagcactcatcaccacttagccatctccctaggcccccaagacgtgtag
tttaagacattagattgcagtcatattgtataggtctcagagctggcagc
tttccttgtcttatgtcttggcttaactttactcttagagggcaaaccta
ctttttttcttatgggacatgtcaccaccatttccatacgccagctgtgg
ggccaagggacacctggtcattctcagtgaagctttgtttccccatcttc
ttccctccagccagcttcctgttttgggactctcatctgtctagtgagaa
ggcagatgctacccctcaccttctggcttatgtaatagagttctccctgg
tttctgtgaaaagtcagggaaactgctgtctacgttgtaactggatatag
ctggttttcttgggggagagatttctagtcagacagaacctaacacagtg
gtagctttcttctctcaataaatagctctgaggctgaagaaatggctcag
tggtttagagcacaggctgttcttgctgaggagcctgtgttaggttccca
gtagccatgtggtccctcataaccactggttaccctacttctatggtgtc
taatgtgccctttttggcctccatggctcctgcatgtgtgcacacacatt
cacacacatacatagaaattaactaacattaaactatattaaatacctca
aagcgctactgaacaccccactttctacttgactcggagtgtattgactt
cgaagtctacacagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18109236_18109749
seq2: B6Ng01-160J10.b_441_961 (reverse)

seq1  CAGCTTGACAACACACCTAAAAGT----TCTAGAACAAAAGGAAGCAAAT  46
      ||||||||||||||||||||||||    |||||||||||||||||||| |
seq2  CAGCTTGACAACACACCTAAAAGTAAGCTCTAGAACAAAAGGAAGCAAGT  50

seq1  TCACCCAAGAGGAGTAGACGGCAGGAAAT-AATCAAACTCA-GGGGCGAA  94
      ||||||||  ||||||||  ||||||||| ||||||||||| ||||||||
seq2  TCACCCAAAGGGAGTAGA-TGCAGGAAATAAATCAAACTCAGGGGGCGAA  99

seq1  ATCAACCAAGTGGAAAC---AAGAACTATTCAGAGAATCAACCAATCGAG  141
      |||||||||||||||||   |||||||||||| |||||||||||| ||||
seq2  ATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAACGAG  149

seq1  GAGCTGGTTCTTTGAGAAAATCAACAAGGTAGACAAACCCTTAGCCAGAC  191
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGCTGGTTCTTTGAGAAAATCAACAAGATAGACAAACCCTTAGCCAGAC  199

seq1  TCACTAGAGGGCACAGGGAAAGCATTCTAATTAACAAAATCAGAAATGAA  241
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCACTAGAGGGCCCAGGGAAAGCATTCTAATTAACAAAATCAGAAATGAA  249

seq1  AAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATC  299

seq1  CTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATGAAATGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATGAAATGG  349

seq1  AGAAGTTTCTAGACAGATACCAGGTACCAAAGTTGAATCAAGATCAGGTT  391
      | ||||||||||||| |||||||||||||||||| ||||| |||||||||
seq2  ACAAGTTTCTAGACAAATACCAGGTACCAAAGTTAAATCAGGATCAGGTT  399

seq1  AATGATCTAAACAGCCCGATATCCCCCAAAGAAATAGAAGCAGTCATTAA  441
      |||||||||||||| || |||| |||| ||||||||||||||||||||||
seq2  AATGATCTAAACAGTCCTATAT-CCCCTAAGAAATAGAAGCAGTCATTAA  448

seq1  TAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGT  491
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCCATACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGT  498

seq1  TCTATCAGACCTCCAAAGAAGAT  514
      ||||||||| || ||||||||||
seq2  TCTATCAGATCTTCAAAGAAGAT  521

seq1: chr12_32824765_32825848
seq2: B6Ng01-160J10.g_66_1132

seq1  GAATTCACTTTGGTCCAAGGGCTGACAAGTCCTTCTCTCTGAAATCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGGTCCAAGGGCTGACAAGTCCTTCTCTCTGAAATCTCAC  50

seq1  AGGCTCACTCTTGTCTGTGTTCCAGTGCCAAGCGGATGCCGATGGCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACTCTTGTCTGTGTTCCAGTGCCAAGCGGATGCCGATGGCTGGA  100

seq1  TGTACCTTACCTAAACTCATAAAGCATGTATTCTAAAGATTTATTCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTACCTAAACTCATAAAGCATGTATTCTAAAGATTTATTCCATT  150

seq1  TGTATTTATGTGTATGCGTGCCACGTGAGTGTGGGTGCCCGAGGAGGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATGTGTATGCGTGCCACGTGAGTGTGGGTGCCCGAGGAGGCCG  200

seq1  GTAGAGGGCCTTGGGTCCTCTGGAGCTGGAGTTGTTATAGGTGGTTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGGCCTTGGGTCCTCTGGAGCTGGAGTTGTTATAGGTGGTTGTGA  250

seq1  CCCTCTGGACCTGGGTGATGGGAACTGAACTCAGTCTTTTGGAAAAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGACCTGGGTGATGGGAACTGAACTCAGTCTTTTGGAAAAGTAG  300

seq1  CAAGCACTCATCACCACTTAGCCATCTCCCTAGGCCCCCAAGACGTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTCATCACCACTTAGCCATCTCCCTAGGCCCCCAAGACGTGTAG  350

seq1  TTTAAGACATTAGATTGCAGTCATATTGTATAGGTCTCAGAGCTGGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGACATTAGATTGCAGTCATATTGTATAGGTCTCAGAGCTGGCAGC  400

seq1  TTTCCTTGTCTTATGTCTTGGCTTAACTTTACTCTTAGAGGGCAAACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTCTTATGTCTTGGCTTAACTTTACTCTTAGAGGGCAAACCTA  450

seq1  CTTTTTTTCTTATGGGACATGTCACCACCATTTCCATACGCCAGCTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCTTATGGGACATGTCACCACCATTTCCATACGCCAGCTGTGG  500

seq1  GGCCAAGGGACACCTGGTCATTCTCAGTGAAGCTTTGTTTCCCCATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGGACACCTGGTCATTCTCAGTGAAGCTTTGTTTCCCCATCTTC  550

seq1  TTCCCTCCAGCCAGCTTCCTGTTTTGGGACTCTCATCTGTCTAGTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCAGCCAGCTTCCTGTTTTGGGACTCTCATCTGTCTAGTGAGAA  600

seq1  GGCAGATGCTACCCCTCACCTTCTGGCTTATGTAATAGAGTTCTCCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGCTACCCCTCACCTTCTGGCTTATGTAATAGAGTTCTCCCTGG  650

seq1  TTTCTGTGAAAAGTCAGGGAAACTGCTGTCTACGTTGTAACTGGATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGAAAAGTCAGGGAAACTGCTGTCTACGTTGTAACTGGATATAG  700

seq1  CTGGTTTTCTTGGGGGAGAGATTTCTAGTCAGACAGAACCTAACACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTCTTGGGGGAGAGATTTCTAGTCAGACAGAACCTAACACAGTG  750

seq1  GTAGCTTTCTTCTCTCAATAAATAGCTCTGAGGCTGAAGAAATGGCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTCTTCTCTCAATAAATAGCTCTGAGGCTGAAGAAATGGCTCAG  800

seq1  TGGTTAAGAGCACAGGCTGTTCTTGCTGAGGAGCCTGTGTTAGGTTCCCA  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGAGCACAGGCTGTTCTTGCTGAGGAGCCTGTGTTAGGTTCCCA  850

seq1  GTAGCCATGTGGTCCCTCATAACCACTGGTAACCCTACTTCTATGGTGTC  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAGCCATGTGGTCCCTCATAACCACTGGTTACCCTACTTCTATGGTGTC  900

seq1  TAATGTGCCCTTTTTTGGCCTCCATGGGCTCCTGCATGTGGTGCACACAC  950
      |||||||||| |||||||||||||| ||||||||||||| ||||||||||
seq2  TAATGTGCCC-TTTTTGGCCTCCAT-GGCTCCTGCATGT-GTGCACACAC  947

seq1  ATTCACACACATACATAGAAAAATAAACTAACATTAAAAATTATATTTAA  1000
      ||||||||||||||||||  |||| ||||||||||  ||| ||||||   
seq2  ATTCACACACATACATAG--AAATTAACTAACATT--AAACTATATT---  990

seq1  AATTACCTCCACAAGCGCTACCTGAAACACCCCACTTTTCTTACATTGAC  1050
      || ||||||   |||||||| ||| |||||||||||||   ||| |||||
seq2  AAATACCTC--AAAGCGCTA-CTG-AACACCCCACTTT--CTAC-TTGAC  1033

seq1  TCTGAGTGTATTGACTTCAGAGTCTACACAGCAA  1084
      || |||||||||||||||  ||||||||||||||
seq2  TCGGAGTGTATTGACTTCGAAGTCTACACAGCAA  1067