BAC Information

Click to search

BAC

Clone NameB6Ng01-160M02
Chromosome12 (Build37)
Map Location 75,610,757 - 75,611,830
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160M02.bB6Ng01-160M02.g
ACCDH954047DH954048
length1,0611,217
definitionDH954047|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M02, 5' end.DH954048|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaatcagctcaatccaattcatttaaggccattcttcattgt
atgctacttcatgaatattttgacagtgtttacaactcaataatatcttt
tcttgttttgactaaaaatagcattgggttttctactgtattgacttgga
tgttctttttctacaaaatatgttttatctacttcccctatgagatacaa
tggccttcagttcgggatcagttatcttttcttaagaatatgcattttta
acccagtaagattatgtatataatttcaaaggaagtcatcttaaatattt
cagaagaagattcaaattcagaaataaatgagatatatatcctagtgcat
ttgaagaaaaagtacttgaagaaaaggagctgtatcatgactgagtatga
tgctgtatacctgcacttccaactgtccagagtcaggagggtaattgcaa
gttggaggccaggctgatctatatagcaagtttgaggacacatggtaaga
atctctcccagtttgctatagatttcacataaaattatgttttttttatt
cttaattgtgtgtatttgtgtgttatattcatgtacatatatttttgtgt
ggagccagaggacactaatgcctaatgtctttctcaattgctttcttact
tattactttgagacagggtcttgcactgagcctagagctcactattttgc
ttgactagggtggttagtaagagtgctggggttcttctgtatctaaatcc
ctcttctaatgagcagaagggttagagtggcatgtaaaaacatctggctt
ttagtagcttattgggattcgaattcaggtcttcatgcttgaacagcaag
cactctgctgactgcagcatctccacggagcataaattttaaagggaaaa
caggttgtctggataaactacaaacagagaaatttcagaaataaatgaca
tcatgcatcaatgacctacagatatcacaaattttgattcaaacacgaag
atccacatctactcagcagctcaagagtatctctaaatagattcacaccc
ttaggaacaaa
gaattctcaaaaagctatacaaacagtaatctggcccagctgtactcccc
cttagcacatgcccaaaggaccacacatcctactccacagagacttgtcc
aatcatgtcactgctgctctagtcactataggtaggaaatgggaaaccct
aaatgtccgtcagttgacatatgaataatgagaatgtacatatgtactat
ggaatactattctatggttaaaggaaaacgacatcatcaactttagaggc
aaatggaactataatggatcatgttgagtgacccagagccagaaagacaa
atgatgaatgatctccaggatctcacgagtttctctcatagctccagatc
ttcagatgtaaatgcatagtctgcaacagatacagaaaccaggacagcaa
agcaggaatattgccaggatagggagtttgaggagcaatagaaaaaggaa
tagcagggtacacatgatctggtcagggacatgggacaagaaaatgtttt
ggttaatgagagggaagaaaatgcagaagagaggctgatggcagactaca
agtgatgggaaaggaggtgctctttagacaataaaataacaataggtatg
tctgaaaagtcacaaaaaatcatactatgaactatttaccttaaaatgat
tctgtgtataacatatatacatagttcggataaactttttctcatctgta
catattcctccaagagccaaagaccacctagcaaaaaaatcttaatacca
gacatgaaaagccttcttttgaggtgaattttttagggctgtccaaacga
ctctcaaagtgtacagcctattacagttgccctttgtgatctgtcagagg
tggaaaatacgtccctattgctggagacaccatgaacttcagaaacaaag
ctagagctccatgacctggactggcctgagtggtccccttcagagaccag
cttttatagtatagaagaagcttccaaagtggtagaacccaaagtgctac
ccagctgtgctgcctgtgatccacatgacagcaagcgtgacaggtaatca
aagatgtagtaccacccacctggtagtaccattatctttctactgacttg
gaattgctcacaacaagtaacatgcctggtacatgaaacctaactaacat
acaagtctggaatggagatctccacaactatgtcatctaacaggatgact
catatcctgggatgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_75610757_75611830
seq2: B6Ng01-160M02.b_43_1103

seq1  GAATTCTTTAATCAGCTCAATCCAATTCATTTAAGGCCATTCTTCATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATCAGCTCAATCCAATTCATTTAAGGCCATTCTTCATTGT  50

seq1  ATGCTACTTCATGAATATTTTGACAGTGTTTACAACTCAATAATATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACTTCATGAATATTTTGACAGTGTTTACAACTCAATAATATCTTT  100

seq1  TCTTGTTTTGACTAAAAATAGCATTGGGTTTTCTACTGTATTGACTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTGACTAAAAATAGCATTGGGTTTTCTACTGTATTGACTTGGA  150

seq1  TGTTCTTTTTCTACAAAATATGTTTTATCTACTTCCCCTATGAGATACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTTCTACAAAATATGTTTTATCTACTTCCCCTATGAGATACAA  200

seq1  TGGCCTTCAGTTCGGGATCAGTTATCTTTTCTTAAGAATATGCATTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCAGTTCGGGATCAGTTATCTTTTCTTAAGAATATGCATTTTTA  250

seq1  ACCCAGTAAGATTATGTATATAATTTCAAAGGAAGTCATCTTAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTAAGATTATGTATATAATTTCAAAGGAAGTCATCTTAAATATTT  300

seq1  CAGAAGAAGATTCAAATTCAGAAATAAATGAGATATATATCCTAGTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAGATTCAAATTCAGAAATAAATGAGATATATATCCTAGTGCAT  350

seq1  TTGAAGAAAAAGTACTTGAAGAAAAGGAGCTGTATCATGACTGAGTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAAAGTACTTGAAGAAAAGGAGCTGTATCATGACTGAGTATGA  400

seq1  TGCTGTATACCTGCACTTCCAACTGTCCAGAGTCAGGAGGGTAATTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATACCTGCACTTCCAACTGTCCAGAGTCAGGAGGGTAATTGCAA  450

seq1  GTTGGAGGCCAGGCTGATCTATATAGCAAGTTTGAGGACACATGGTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGGCCAGGCTGATCTATATAGCAAGTTTGAGGACACATGGTAAGA  500

seq1  ATCTCTCCCAGTTTGCTATAGATTTCACATAAAATTATGTTTTTTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCCAGTTTGCTATAGATTTCACATAAAATTATGTTTTTTTTATT  550

seq1  CTTAATTGTGTGTATTTGTGTGTTATATTCATGTACATATATTTTTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGTGTGTATTTGTGTGTTATATTCATGTACATATATTTTTGTGT  600

seq1  GGAGCCAGAGGACACTAATGCCTAATGTCTTTCTCAATTGCTTTCTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGAGGACACTAATGCCTAATGTCTTTCTCAATTGCTTTCTTACT  650

seq1  TATTACTTTGAGACAGGGTCTTGCACTGAGCCTAGAGCTCACTATTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTTGAGACAGGGTCTTGCACTGAGCCTAGAGCTCACTATTTTGC  700

seq1  TTGACTA-GGTGGTTAGTAAGAGTGCTGGGGTTCTTCTGTATCTAAATCC  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAGGGTGGTTAGTAAGAGTGCTGGGGTTCTTCTGTATCTAAATCC  750

seq1  CTCTTCTAATGAGCAGAAGGGTTAGAGTGGCATGTAAAAACATCTGGCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTAATGAGCAGAAGGGTTAGAGTGGCATGTAAAAACATCTGGCTT  800

seq1  TTAGTAGCTTATTGGGATTCGAATTCAGGTCTTCATGCTTGAACAGCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGCTTATTGGGATTCGAATTCAGGTCTTCATGCTTGAACAGCAAG  850

seq1  CACTCTGCTGACTGCAGCATCTCCACGGAGCATAAATTTTTAAAAGGGAA  899
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  CACTCTGCTGACTGCAGCATCTCCACGGAGCATAAATTTT--AAAGGGAA  898

seq1  AACAGGTTGTCTGGATAAAACTACAAACAGAGAAATTTCAGAAATAAATG  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACAGGTTGTCTGGAT-AAACTACAAACAGAGAAATTTCAGAAATAAATG  947

seq1  ACATCATGCATCAAATGAACCTAACAGATATCCACAAAATATTTGATTCA  999
      |||||||||||| |||| |||| |||||||| ||||||   |||||||||
seq2  ACATCATGCATC-AATG-ACCT-ACAGATAT-CACAAA--TTTTGATTCA  991

seq1  AACACCAAAGAATCCACATTCTACTCAGCAGCTCATAGGAGTATCTCTAA  1049
      ||||| ||   ||||||| |||||||||||||||  | |||||||||| |
seq2  AACACGAA--GATCCACA-TCTACTCAGCAGCTC--AAGAGTATCTCT-A  1035

seq1  AATAGA-TCACACCC-TAGGACACAAA  1074
      |||||| |||||||| ||||| |||||
seq2  AATAGATTCACACCCTTAGGA-ACAAA  1061