BAC Information

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BAC

Clone NameB6Ng01-160N19
Chromosome12 (Build37)
Map Location 10,811,466 - 10,961,663
singlet/doubletdoublet
Overlap geneLOC100042308, EG668435
Upstream geneLOC382567, Nt5c1b, Rdh14, LOC238074
Downstream geneKcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160N19.bB6Ng01-160N19.g
ACCDH954126DH954127
length7921,059
definitionDH954126|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N19, 5' end.DH954127|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,811,466 - 10,812,257)(10,960,587 - 10,961,663)
sequence
gaattcattgagctgccactagagggaggactatccaagagccggggcac
ctgctgaatattgtttgtttgttttaatgcttttacttgacatattttca
ttacttgtttaataattccatacattcacacaatacctaatgggagagag
gagaaaatataaagacagcaatgatagcaatgatagttcaaacttgtcac
ccttcactccagcttcttcaagccttgtaggaagtagatcctgatgactt
gactctaattggccactgacttatgagtatttgggaggggagggagtgag
gtcagagaacaacgtcaagtcttggtccttgtcctccatcgttcgaggga
cagggtctctctgccatgtcataagtgagccgggcaacagcaagcttcta
gtgattttcttgtctccctttcccatttcacagaaaggaggcacaaagac
ctcttgcatttctgcatccagcttttaggtgggttctggggaactcaggt
catcgctttgttcagaaaaccattttacccactgagccattttcccacgt
acaagttgttgtctttggtacttggctttattagcggtgctttctatcag
tcctgtagttttgctattgctgatagccccatgatgatgatacctatcag
gaacagtcaaaggtgttcccaattattttctattgagctacatgatcttg
tctaaatatagagaaatggaactttgtggctacattgagacaatgatttg
aatttatagaacaactagtagagcaaaagggggaaatgaatg
gaattccttacagaaaaaaaaaaacccagtaattccaaatttctgcaatt
gcattttaaaccacaattttgaatcaatatttctttgcttaagataattg
ttttcttagtgtgagcaactgttacatgtgcaagtatgtatatttgtaac
catgtgcctgtgtctgtatgtatgcatgtgtatgtatacatgtgagtgta
tgtaaatctgtgtttgcatgtgtgtgactagtcatatgtatgtgtgtctg
aagtttctatttttttttttttttttgtgcagatgttgccactcaattgc
tccaggatgtgatttgagaatgtttgaaatgcattgcaaatattgaaaag
catacttagaagccctatgcactgcattccagtgtcgccaggttttgtgt
gtcttccctttggatgaacagtagagacacctggagagttttctctgggt
tctcccctctttccacctccctgttatcactcataaacccaaccagatgt
ttttatcacacactttcctattggaaactcaggtgttcacagatttttct
tctttcttagattttaagttacaaacttgtgaagagagagattaaatgct
ctgaaagaagaggaggaaaaattctattatgctatttttcctaaatcaca
aattagaattcacagttgaatctccctgatttaagaattggtttatttaa
aacgtcttatgacattataaagttaaatgtgcttagcaatcattttaaga
ggttgttagtatagacagaaaatagctgcttgggaaatgtatatacaata
caaagataccattgtttggtaagtggagttgttactgttgctaataaatt
gagaacatgctgtaagtgtgttgatatcttcatagacattgtcagaatat
tttagaaatctcccagcacgttattacagacaatattgcatgccatagta
agtttcatgacactactgagactcttgtgagcagtatttatgtctagtat
attgaaacatcactaggctaatactgggaagaaagcattcctaggacttg
atcttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10811466_10812257
seq2: B6Ng01-160N19.b_48_839

seq1  GAATTCATTGAGCTGCCACTAGAGGGAGGACTATCCAAGAGCCGGGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGCTGCCACTAGAGGGAGGACTATCCAAGAGCCGGGGCAC  50

seq1  CTGCTGAATATTGTTTGTTTGTTTTAATGCTTTTACTTGACATATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAATATTGTTTGTTTGTTTTAATGCTTTTACTTGACATATTTTCA  100

seq1  TTACTTGTTTAATAATTCCATACATTCACACAATACCTAATGGGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTTTAATAATTCCATACATTCACACAATACCTAATGGGAGAGAG  150

seq1  GAGAAAATATAAAGACAGCAATGATAGCAATGATAGTTCAAACTTGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATATAAAGACAGCAATGATAGCAATGATAGTTCAAACTTGTCAC  200

seq1  CCTTCACTCCAGCTTCTTCAAGCCTTGTAGGAAGTAGATCCTGATGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTCCAGCTTCTTCAAGCCTTGTAGGAAGTAGATCCTGATGACTT  250

seq1  GACTCTAATTGGCCACTGACTTATGAGTATTTGGGAGGGGAGGGAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAATTGGCCACTGACTTATGAGTATTTGGGAGGGGAGGGAGTGAG  300

seq1  GTCAGAGAACAACGTCAAGTCTTGGTCCTTGTCCTCCATCGTTCGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAACAACGTCAAGTCTTGGTCCTTGTCCTCCATCGTTCGAGGGA  350

seq1  CAGGGTCTCTCTGCCATGTCATAAGTGAGCCGGGCAACAGCAAGCTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCTCTGCCATGTCATAAGTGAGCCGGGCAACAGCAAGCTTCTA  400

seq1  GTGATTTTCTTGTCTCCCTTTCCCATTTCACAGAAAGGAGGCACAAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTCTTGTCTCCCTTTCCCATTTCACAGAAAGGAGGCACAAAGAC  450

seq1  CTCTTGCATTTCTGCATCCAGCTTTTAGGTGGGTTCTGGGGAACTCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATTTCTGCATCCAGCTTTTAGGTGGGTTCTGGGGAACTCAGGT  500

seq1  CATCGCTTTGTTCAGAAAACCATTTTACCCACTGAGCCATTTTCCCACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTTTGTTCAGAAAACCATTTTACCCACTGAGCCATTTTCCCACGT  550

seq1  ACAAGTTGTTGTCTTTGGTACTTGGCTTTATTAGCGGTGCTTTCTATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTTGTCTTTGGTACTTGGCTTTATTAGCGGTGCTTTCTATCAG  600

seq1  TCCTGTAGTTTTGCTATTGCTGATAGCCCCATGATGATGATACCTATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAGTTTTGCTATTGCTGATAGCCCCATGATGATGATACCTATCAG  650

seq1  GAACAGTCAAAGGTGTTCCCAATTATTTTCTATTGAGCTACATGATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAACAGTCAAAGGTGTTCCCAATTATTTTCTATTGAGCTACATGATCTTG  700

seq1  TCTAAATATAGAGAAATGGAACTTTGTGGCTACATTGAGACAATGATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATAGAGAAATGGAACTTTGTGGCTACATTGAGACAATGATTTG  750

seq1  AATTTATAGAACAACCAGAAGAGCAAAAGGGGGAAATGAATG  792
      ||||||||||||||| || |||||||||||||||||||||||
seq2  AATTTATAGAACAACTAGTAGAGCAAAAGGGGGAAATGAATG  792

seq1: chr12_10960587_10961663
seq2: B6Ng01-160N19.g_68_1126 (reverse)

seq1  AAATAAGATACAGTCCTAGAGAAATGCCCTTTCTTCCCAAGTAATTTAGC  50
      |||||||||  ||||||  || ||||  |||||||||| ||||  |||| 
seq2  AAATAAGATCAAGTCCT--AGGAATG--CTTTCTTCCC-AGTA--TTAG-  42

seq1  CCTAGTGATGTTTTCCATTATTACTAGACATAAATACTGCTCACAGAGGT  100
      |||||||||||||  || || ||||||||||||||||||||||||   ||
seq2  CCTAGTGATGTTT--CAATA-TACTAGACATAAATACTGCTCACAAGAGT  89

seq1  TCCTCAGTTAGTGTCATGAAAACTTACTTATGGCATTGCATATTTGTCTG  150
        ||||| |||||||||| |||||||| ||||||| ||||   |||||||
seq2  --CTCAG-TAGTGTCATG-AAACTTAC-TATGGCA-TGCAATATTGTCTG  133

seq1  TAATAACGTGCTGTGGAGATTTCTAAAATATTCTGACAATGTCTTATTGA  200
      ||||||||||||| ||||||||||||||||||||||||||||||   |||
seq2  TAATAACGTGCTG-GGAGATTTCTAAAATATTCTGACAATGTCT--ATGA  180

seq1  AGATATTCAACACACTTACAGCATGTTCTCAATTTATTAGC-ACAGTAAC  249
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGATA-TCAACACACTTACAGCATGTTCTCAATTTATTAGCAACAGTAAC  229

seq1  AACTCCACTTACCAAAC-ATGGTATCTTTGTATTGTATATACATTT-CCA  297
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  AACTCCACTTACCAAACAATGGTATCTTTGTATTGTATATACATTTCCCA  279

seq1  AGCAGCTATTTTCTGTCTATACTAACAACCTCTTAAAATGATTGCTAAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTATTTTCTGTCTATACTAACAACCTCTTAAAATGATTGCTAAGC  329

seq1  ACATTTAACTTTATAATGTCATAAGACGTTTTAAATAAACCAATTCTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAACTTTATAATGTCATAAGACGTTTTAAATAAACCAATTCTTAA  379

seq1  ATCAGGGAGATTCAACTGTGAATTCTAATTTGTGATTTAGGAAAAATAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGAGATTCAACTGTGAATTCTAATTTGTGATTTAGGAAAAATAGC  429

seq1  ATAATAGAATTTTTCCTCCTCTTCTTTCAGAGCATTTAATCTCTCTCTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGAATTTTTCCTCCTCTTCTTTCAGAGCATTTAATCTCTCTCTTC  479

seq1  ACAAGTTTGTAACTTAAAATCTAAGAAAGAAGAAAAATCTGTGAACACCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTGTAACTTAAAATCTAAGAAAGAAGAAAAATCTGTGAACACCT  529

seq1  GAGTTTCCAATAGGAAAGTGTGTGATAAAAACATCTGGTTGGGTTTATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCAATAGGAAAGTGTGTGATAAAAACATCTGGTTGGGTTTATGA  579

seq1  GTGATAACAGGGAGGTGGAAAGAGGGGAGAACCCAGAGAAAACTCTCCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACAGGGAGGTGGAAAGAGGGGAGAACCCAGAGAAAACTCTCCAG  629

seq1  GTGTCTCTACTGTTCATCCAAAGGGAAGACACACAAAACCTGGCGACACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTACTGTTCATCCAAAGGGAAGACACACAAAACCTGGCGACACT  679

seq1  GGAATGCAGTGCATAGGGCTTCTAAGTATGCTTTTCAATATTTGCAATGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCAGTGCATAGGGCTTCTAAGTATGCTTTTCAATATTTGCAATGC  729

seq1  ATTTCAAACATTCTCAAATCACATCCTGGAGCAATTGAGTGGCAACATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAACATTCTCAAATCACATCCTGGAGCAATTGAGTGGCAACATCT  779

seq1  GCACAAAAAAAAAAAAAAAAATAGAAACTTCAGACACACATACATATGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAAAAAAAAAAAAAATAGAAACTTCAGACACACATACATATGAC  829

seq1  TAGTCACACACATGCAAACACAGATTTACATACACTCACATGTATACATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACACACATGCAAACACAGATTTACATACACTCACATGTATACATA  879

seq1  CACATGCATACATACAGACACAGGCACATGGTTACAAATATACATACTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCATACATACAGACACAGGCACATGGTTACAAATATACATACTTG  929

seq1  CACATGTAACAGTTGCTCACACTAAGAAAACAATTATCTTAAGCAAAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAACAGTTGCTCACACTAAGAAAACAATTATCTTAAGCAAAGAA  979

seq1  ATATTGATTCAAAATTGTGGTTTAAAATGCAATTGCAGAAATTTGGAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATTCAAAATTGTGGTTTAAAATGCAATTGCAGAAATTTGGAATT  1029

seq1  ACTGGGTTTTTTTTTTTCTGTAAGGAATTC  1077
      ||||||||||||||||||||||||||||||
seq2  ACTGGGTTTTTTTTTTTCTGTAAGGAATTC  1059