BAC Information

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BAC

Clone NameB6Ng01-161G01
Chromosome12 (Build37)
Map Location 23,255,558 - 23,476,376
singlet/doubletdoublet
Overlap geneEG668669, EG668670, LOC668680
Upstream geneLOC668650, EG668496, LOC668653, EG432637, LOC668656, EG629133, EG668660, EG668662, LOC668664, 2410018L13Rik, LOC77114
Downstream geneLOC100042895, LOC100043435, EG628081, LOC100042903, LOC100043440, EG668518, LOC100043445, LOC668697, LOC100042923, LOC677338, EG668701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161G01.bB6Ng01-161G01.g
ACCDH954505DH954506
length1,1711,058
definitionDH954505|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G01, 5' end.DH954506|Mus musculus domesticus DNA, BAC clone: B6Ng01-161G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,255,558 - 23,256,720)(23,475,318 - 23,476,376)
sequence
tggccgagacccttgaggactacatggcgcccacggcctctagcttcacc
acacgcacggcccagtgcctgaacaccgaggcggccatcgaggaggtgag
cggtagcttagccggcgccgggcgggaggctagagccgcgtgggatcgcg
ctgcgccctgggcacccggtaggcttccgcgcctggtgccggatacccag
tgccctccacctgcgcccacacccgggaaaagtttctggtaccccaaagc
cggacgcagccggaccagcagtgcccgacacagaagccctttgttccctg
ctctagagagaggctgcttggccaccttgggccttttttgggaacgctcc
tgtctgttcccatttccctcgcagggtttcaggttctttgctcccatcct
cggagaggtcaacttcggctgcagagtctgtggcggcttggagccgggga
cccctgcgagctctgctccccggagtgatggctctccctgcgtggacctc
tccaacttgttccggacatagcccggcgggggcagctgtggcttctgagc
caacatgtagagcagatccagggaccccaagctgcttaggcatgggtgcc
catcccatcttgggaggcctggcagttcccactacgtgccacagagcagc
gctgtagagggatgtggagaatggtctttttggggtccataaggtctttt
ggtggcctcttctgggctacctgtgtggtgcctgttgacagtatgatcag
ttcctgtgcccttagccctggaaagggcctgcatagtcattgtattgagt
ggctaagcagagagctcttcaagatcctgggaacagggactgagagaagg
aagcaagtttgggttgaaaatgaaagcaggcttggaagaggctgtgtgag
tccagagaccacgctgtcaactgcttaggaaagcctcacttacatcattt
tctttacctccccaacagaatttgagttcctgttttccggttctgtaggc
tttgttagtcctctggactcccaaaggtagctggagaaatgaaacaccag
tgtgttgctagaatggaacccagattactattcctttgctcaagattttt
aacttcaaggtacatattgtaaatccttgggtgcctaaggctcgggtggt
cagagaagcctttttaaatta
gaattcccatgagcatgtctgttctgcccatggctcagctgtatctgtga
gtaaggaagagagttagttaatacttagttgaactcaagctcttgggtga
gactctatggggcttgtgtcttctggggcaaagtcaagaagcagccccac
atgtcagtgttcacacatgctgccatgagtgtgctgagaaagcctattca
tcagtctagtgtagactgacagcacctcctctcctgcctcctcacttgga
aaatgtcactgagctcgctttgtggggaaagcaggagctgggaatttcct
aggtctgtgccactttgtgcggtggaagggggcctggctcttttctgatg
atgaaaataaggacatgttgctgtcttggattacccacttctggatcttg
ttactatggaagaaaggttctttctcagctgcaagtgagtagctcaaatg
agaaagccatgtccaacagaagcccacaaaggaggaaggacaggacactt
aggacttaatatggaggtgtcaaatgcgctgtggaagacaggtgatgaaa
ttgcttcacatcaattctggtttctgttttaaaacatttgatttgttgct
atgaaaacaaatatatggaaagaatgcagttcggtgacacaaaaggcatt
tcttcttcctaactttagatgctgtttccctctaccctttgacaagtcgc
tggccagcagaggagacagttgtggaagggcagcaaatgctctttctgga
gaagtggcctcagcccaagctcacaaggtgtgtgggggtgggttcaggtg
caatttttaacttatttgatgaactgctgtggtggagtctattcattaag
acacgctcttggtactgatgaaaccctaaactacaggaaccggaggaggc
ttagagactgctggccaatggaatcttcatggttctgtgtgactcaccag
actgtcttctgtgggactgggacagcccagttttggttataggagactcc
tcactgggaccgccctgttattttaagtcatgagaaaccgaagaagaaac
aattgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_23255558_23256720
seq2: B6Ng01-161G01.b_52_1222

seq1  TGGCCGAGACCCTTGAGGACTACATGGCGCCCACGGCCTCTAGCTTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGAGACCCTTGAGGACTACATGGCGCCCACGGCCTCTAGCTTCACC  50

seq1  ACACGCACGGCCCAGTGCCTGAACACCGAGGCGGCCATCGAGGAGGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCACGGCCCAGTGCCTGAACACCGAGGCGGCCATCGAGGAGGTGAG  100

seq1  CGGTAGCTTAGCCGGCGCCGGGCGGGAGGCTAGAGCCGCGTGGGATCGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGCTTAGCCGGCGCCGGGCGGGAGGCTAGAGCCGCGTGGGATCGCG  150

seq1  CTGCGCCCTGGGCACCCGGTAGGCTTCCGCGCCTGGTGCCGGATACCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCCCTGGGCACCCGGTAGGCTTCCGCGCCTGGTGCCGGATACCCAG  200

seq1  TGCCCTCCACCTGCGCCCACACCCGGGAAAAGTTTCTGGTACCCCAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCACCTGCGCCCACACCCGGGAAAAGTTTCTGGTACCCCAAAGC  250

seq1  CGGACGCAGCCGGACCAGCAGTGCCCGACACAGAAGCCCTTTGTTCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACGCAGCCGGACCAGCAGTGCCCGACACAGAAGCCCTTTGTTCCCTG  300

seq1  CTCTAGAGAGAGGCTGCTTGGCCACCTTGGGCCTTTTTTGGGAACGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGAGAGGCTGCTTGGCCACCTTGGGCCTTTTTTGGGAACGCTCC  350

seq1  TGTCTGTTCCCATTTCCCTCGCAGGGTTTCAGGTTCTTTGCTCCCATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTCCCATTTCCCTCGCAGGGTTTCAGGTTCTTTGCTCCCATCCT  400

seq1  CGGAGAGGTCAACTTCGGCTGCAGAGTCTGTGGCGGCTTGGAGCCGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAGGTCAACTTCGGCTGCAGAGTCTGTGGCGGCTTGGAGCCGGGGA  450

seq1  CCCCTGCGAGCTCTGCTCCCCGGAGTGATGGCTCTCCCTGCGTGGACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCGAGCTCTGCTCCCCGGAGTGATGGCTCTCCCTGCGTGGACCTC  500

seq1  TCCAACTTGTTCCGGACATAGCCCGGCGGGGGCAGCTGTGGCTTCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTGTTCCGGACATAGCCCGGCGGGGGCAGCTGTGGCTTCTGAGC  550

seq1  CAACATGTAGAGCAGATCCAGGGACCCCAAGCTGCTTAGGCATGGGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTAGAGCAGATCCAGGGACCCCAAGCTGCTTAGGCATGGGTGCC  600

seq1  CATCCCATCTTGGGAGGCCTGGCAGTTCCCACTACGTGCCACAGAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATCTTGGGAGGCCTGGCAGTTCCCACTACGTGCCACAGAGCAGC  650

seq1  GCTGTAGAGGGATGTGGAGAATGGTCTTTTTGGGGTCCATAAGGTC-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTGTAGAGGGATGTGGAGAATGGTCTTTTTGGGGTCCATAAGGTCTTTT  700

seq1  GGTGGCCTCTTCTGGGCTACCTGTGTGGTGCCTGTTGACAGTATGATCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTCTTCTGGGCTACCTGTGTGGTGCCTGTTGACAGTATGATCAG  750

seq1  TTCCTGTGCCCTTAG-CCTGGAAAGGGCCTGCATAGTCATTGTATTGAGT  798
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGCCCTTAGCCCTGGAAAGGGCCTGCATAGTCATTGTATTGAGT  800

seq1  GGCTAAGCAGAGAGCTC-TCCAGATCCTGGGGAACAGGGACTGAGAGAAG  847
      ||||||||||||||||| || ||||||| |||||||||||||||||||||
seq2  GGCTAAGCAGAGAGCTCTTCAAGATCCT-GGGAACAGGGACTGAGAGAAG  849

seq1  GAAGC-AGTTTGGGTTGAAAATTGAAGCAGGCTTGGAAGAGGCTGTGTGA  896
      ||||| ||||||||||||||||  ||||||||||||||||||||||||||
seq2  GAAGCAAGTTTGGGTTGAAAATGAAAGCAGGCTTGGAAGAGGCTGTGTGA  899

seq1  GTCCAGAGACCACGCTGTCCACAGCTTAGGAAAGCCTCACTTACATCATT  946
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  GTCCAGAGACCACGCTGTCAACTGCTTAGGAAAGCCTCACTTACATCATT  949

seq1  TTCTTTACCTCCCCAACAGAATTTAGAGTTTCGTGTTTT-CGGCTCTGTA  995
      |||||||||||||||||||||||| ||| ||| |||||| ||| ||||||
seq2  TTCTTTACCTCCCCAACAGAATTT-GAG-TTCCTGTTTTCCGGTTCTGTA  997

seq1  GGCTTTGTTAGTCCATCTGGACTCACAAAAGGTAGCTGGAG-AATGAGAC  1044
      |||||||||||||| ||||||||| | |||||||||||||| ||||| ||
seq2  GGCTTTGTTAGTCC-TCTGGACTC-CCAAAGGTAGCTGGAGAAATGAAAC  1045

seq1  ACACATGTGTAGC-AGTAGTGAACCGATGATTACATTTCCTTTGCTC-AG  1092
      ||   ||||| || || |  ||||| | ||||||  ||||||||||| ||
seq2  ACCAGTGTGTTGCTAGAATGGAACCCA-GATTACTATTCCTTTGCTCAAG  1094

seq1  AATTTTAACATCAAGGTACATATTTTAAAATACTT--GTGTCAGAGGCT-  1139
      | ||||||| |||||||||||||| | |||| |||  ||| |  ||||| 
seq2  ATTTTTAACTTCAAGGTACATATTGT-AAATCCTTGGGTGCCTAAGGCTC  1143

seq1  -GGTGTTCAGAG-AGC--TTTTAAATTA  1163
       |||| |||||| |||  ||||||||||
seq2  GGGTGGTCAGAGAAGCCTTTTTAAATTA  1171

seq1: chr12_23475318_23476376
seq2: B6Ng01-161G01.g_69_1126 (reverse)

seq1  GGACAATTGTTTCCTCTTTCGGTTTCCTCATGAGCTTTAAATAGACA-GG  49
      ||||||||||||| || |||||||| ||||||| ||| ||||| ||| ||
seq2  GGACAATTGTTTCTTC-TTCGGTTT-CTCATGA-CTTAAAATA-ACAGGG  46

seq1  CAGTCACAGTGA-GAGTCTCCCTGCTACCAAAACTGGGCTGTCCCCAGTC  98
      | ||| |||||| |||||| |||   |||||||||||||||| |||||||
seq2  CGGTCCCAGTGAGGAGTCT-CCTATAACCAAAACTGGGCTGT-CCCAGTC  94

seq1  CC-CAGAAGACAGTCTGGTGAGTCACACAGAACCATGAAGATGTCCCCTT  147
      || ||||||||||||||||||||||||||||||||||||||  | || ||
seq2  CCACAGAAGACAGTCTGGTGAGTCACACAGAACCATGAAGA--TTCCATT  142

seq1  GGCCAGC-GTCTCTAAGCCTCCTCCTGGTCCCTGTAGTTTAGGGTTTCAT  196
      ||||||| ||||||||||||||||| ||| ||||||||||||||||||||
seq2  GGCCAGCAGTCTCTAAGCCTCCTCC-GGTTCCTGTAGTTTAGGGTTTCAT  191

seq1  CAGTACCAAGAGCGTGTCTTAATGAATAGACTCCA-CACAGCAGTTCATC  245
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGTACCAAGAGCGTGTCTTAATGAATAGACTCCACCACAGCAGTTCATC  241

seq1  -AATTAGTTTAAAATTGCACCTG-ACCCA-CCCCACACACCTTGTGAGCT  292
       ||| |||| ||||||||||||| ||||| ||||||||||||||||||||
seq2  AAATAAGTTAAAAATTGCACCTGAACCCACCCCCACACACCTTGTGAGCT  291

seq1  TGGGCTGAGGCCACTTCTCCAGAAAGAGCATTTGCTGCCCTTCCACAACT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGAGGCCACTTCTCCAGAAAGAGCATTTGCTGCCCTTCCACAACT  341

seq1  GTCTCCTCTGCTGGCCAGCGACTTGTCAAAGGGTAGAGGGAAACAGCATC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCTGCTGGCCAGCGACTTGTCAAAGGGTAGAGGGAAACAGCATC  391

seq1  TAAAGTTAGGAAGAAGAAATGCCTTTTGTGTCACCGAACTGCATTCTTTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAGGAAGAAGAAATGCCTTTTGTGTCACCGAACTGCATTCTTTC  441

seq1  CATATATTTGTTTTCATAGCAACAAATCAAATGTTTTAAAACAGAAACCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTGTTTTCATAGCAACAAATCAAATGTTTTAAAACAGAAACCA  491

seq1  GAATTGATGTGAAGCAATTTCATCACCTGTCTTCCACAGCGCATTTGACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATGTGAAGCAATTTCATCACCTGTCTTCCACAGCGCATTTGACA  541

seq1  CCTCCATATTAAGTCCTAAGTGTCCTGTCCTTCCTCCTTTGTGGGCTTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATATTAAGTCCTAAGTGTCCTGTCCTTCCTCCTTTGTGGGCTTCT  591

seq1  GTTGGACATGGCTTTCTCATTTGAGCTACTCACTTGCAGCTGAGAAAGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACATGGCTTTCTCATTTGAGCTACTCACTTGCAGCTGAGAAAGAA  641

seq1  CCTTTCTTCCATAGTAACAAGATCCAGAAGTGGGTAATCCAAGACAGCAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCCATAGTAACAAGATCCAGAAGTGGGTAATCCAAGACAGCAA  691

seq1  CATGTCCTTATTTTCATCATCAGAAAAGAGCCAGGCCCCCTTCCACCGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTTATTTTCATCATCAGAAAAGAGCCAGGCCCCCTTCCACCGCA  741

seq1  CAAAGTGGCACAGACCTAGGAAATTCCCAGCTCCTGCTTTCCCCACAAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGCACAGACCTAGGAAATTCCCAGCTCCTGCTTTCCCCACAAAG  791

seq1  CGAGCTCAGTGACATTTTCCAAGTGAGGAGGCAGGAGAGGAGGTGCTGTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTCAGTGACATTTTCCAAGTGAGGAGGCAGGAGAGGAGGTGCTGTC  841

seq1  AGTCTACACTAGACTGATGAATAGGCTTTCTCAGCACACTCATGGCAGCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACACTAGACTGATGAATAGGCTTTCTCAGCACACTCATGGCAGCA  891

seq1  TGTGTGAACACTGACATGTGGGGCTGCTTCTTGACTTTGCCCCAGAAGAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAACACTGACATGTGGGGCTGCTTCTTGACTTTGCCCCAGAAGAC  941

seq1  ACAAGCCCCATAGAGTCTCACCCAAGAGCTTGAGTTCAACTAAGTATTAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCCATAGAGTCTCACCCAAGAGCTTGAGTTCAACTAAGTATTAA  991

seq1  CTAACTCTCTTCCTTACTCACAGATACAGCTGAGCCATGGGCAGAACAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTCTTCCTTACTCACAGATACAGCTGAGCCATGGGCAGAACAGA  1041

seq1  CATGCTCATGGGAATTC  1059
      |||||||||||||||||
seq2  CATGCTCATGGGAATTC  1058