BAC Information

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BAC

Clone NameB6Ng01-161H22
Chromosome12 (Build37)
Map Location 35,923,257 - 36,077,470
singlet/doubletdoublet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161H22.bB6Ng01-161H22.g
ACCDH954590DH954591
length4681,133
definitionDH954590|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H22, 5' end.DH954591|Mus musculus domesticus DNA, BAC clone: B6Ng01-161H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,923,257 - 35,923,730)(36,076,334 - 36,077,470)
sequence
tggcagcaagttcatctgtcaactttgttagattatctgttcagagtatg
taggtgaacaaaatgttgtggggtttctctcttttctaaaatttttactg
gatgttttatttatttacatttcaaatgttattcctctgaaaacccccta
tcctacctctctctgccctgcttctatgagggtgcccccccccccactcc
tgactcactgcctcactcctagcagtctcctattctggggcatcaagcct
tcacaggaaaaagggcctctcctctcattgtggccagaaaagaccatcct
ctgctacatatgtagctggagccatgtgtactctttggttggtggtttag
tctctgggagctctgggggtgggggtggggtctggttgattgatattgtt
gttcttcctatgaggttgcaaaagcctttagctccttcagtccttcatct
aactcccccattgaagtc
gaattcttttgcaaatctactgttaaatgtgttgttatttcttattttct
tttaatgaaaggactattcaaatcaggtagttctttttaatgttctaaaa
ataacaattgcatgcttttcagcctgctgtacaagtacaatactagcaaa
cacaaccctatttacctcctgaattaaggacatgacattatctcttatag
aatcccctcattactcctattgtctttggctccttgtaaataatatcctc
atttaagtcttttatactcatttgtatttccacaggttgtaaactttgtc
cctggtacaaagagcagtagtctctcaaaaagtgaagttagctctcatct
gaaactcatgtcttctaaaaaggggacctggtgcctcttctgtaacttct
gcattgctttcctggcaagcagacaacttcatcagagcaaccagccaagg
agactctttaaatggaagctgtgcacacaaggagcaaacgcattaaaaag
ttgctgacgggcatgaaatgctttgatgtgaagatggaaaactccagagc
aggaaggatttgaggcattttgagtctcattgactctgtggtttctctgc
agttattccacaaggctaaaataaatgcagaaatggtatttttgaggcca
cagctgcagagggactgtgatgaatttcaatgaaaatctagctgaatcgt
gaagaatttggtctttaaaaccctaggaacaggagaatgttgttgcttgc
aatttcattttatctaagaagtaaaaagggaaacctcactttttactccc
aagatgcatatcgactatggcttttagttcaatggcagattctgtgcagt
tctctgaaaagcactctactagtttaattataactagtaataattctgtg
caggatggaaagaggcagtctgataagtcatgtgaagttagtggttagat
gagatagcaagaataaacatgggttttgttttacaattgggtttcttatc
atgatcagtccataacaaactgatttcatataaaacctgcctccagggat
aatggttggatgtcaggtttataattacttcatactatgccaaagggcaa
agttatttagacgcctatgagcatagtttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35923257_35923730
seq2: B6Ng01-161H22.b_47_520

seq1  GAATTCTGGCAGCAAGTTCATCTGTCAACTTTGTTAGATTATCTGTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCAGCAAGTTCATCTGTCAACTTTGTTAGATTATCTGTTCAG  50

seq1  AGTATGTAGGTGAACAAAATGTTGTGGGGTTTCTCTCTTTTCTAAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTAGGTGAACAAAATGTTGTGGGGTTTCTCTCTTTTCTAAAATTT  100

seq1  TTACTGGATGTTTTATTTATTTACATTTCAAATGTTATTCCTCTGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGATGTTTTATTTATTTACATTTCAAATGTTATTCCTCTGAAAAC  150

seq1  CCCCTATCCTACCTCTCTCTGCCCTGCTTCTATGAGGGTGCCCCCCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATCCTACCTCTCTCTGCCCTGCTTCTATGAGGGTGCCCCCCCCCC  200

seq1  CACTCCTGACTCACTGCCTCACTCCTAGCAGTCTCCTATTCTGGGGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGACTCACTGCCTCACTCCTAGCAGTCTCCTATTCTGGGGCATC  250

seq1  AAGCCTTCACAGGAAAAAGGGCCTCTCCTCTCATTGTGGCCAGAAAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCACAGGAAAAAGGGCCTCTCCTCTCATTGTGGCCAGAAAAGAC  300

seq1  CATCCTCTGCTACATATGTAGCTGGAGCCATGTGTACTCTTTGGTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTGCTACATATGTAGCTGGAGCCATGTGTACTCTTTGGTTGGTG  350

seq1  GTTTAGTCTCTGGGAGCTCTGGGGGTGGGGGTGGGGTCTGGTTGATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTCTCTGGGAGCTCTGGGGGTGGGGGTGGGGTCTGGTTGATTGAT  400

seq1  ATTGTTGTTCTTCCTATGAGGTTGCAAAAGCCTTTAGCTCCTTCAGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTCTTCCTATGAGGTTGCAAAAGCCTTTAGCTCCTTCAGTCCT  450

seq1  TCCTCTAACGCCTCCATTGAGGTC  474
      || |||||| || ||||||| |||
seq2  TCATCTAACTCCCCCATTGAAGTC  474

seq1: chr12_36076334_36077470
seq2: B6Ng01-161H22.g_66_1198 (reverse)

seq1  AGAGAACCTATGCTCATAGTGCTGTCTAAATAACCTTGCCTTTGTGCATA  50
      |||||| |||||||||||| || ||||||||||| ||||| ||  |||||
seq2  AGAGAAACTATGCTCATAG-GC-GTCTAAATAACTTTGCCCTTTGGCATA  48

seq1  TGATGAAGTAATTATTATACTGGCATCAAACCATTATTCCTTGAAGCAGG  100
        ||||||||||||| |  ||| |||| ||||||||| ||| || |||||
seq2  GTATGAAGTAATTATAAACCTGACATCCAACCATTATCCCTGGAGGCAGG  98

seq1  TTTTATATGAAATCAGTTTGTTATGGACTGATCATGATAAGAAACCCATT  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTATATGAAATCAGTTTGTTATGGACTGATCATGATAAGAAACCCAAT  148

seq1  TGTAAAACAACACTCATGTTTATTCTTGCCTATCTCATCTTAACCACTAA  200
      |||||||||| || |||||||||||||| |||||||||| ||||||||||
seq2  TGTAAAACAAAACCCATGTTTATTCTTG-CTATCTCATC-TAACCACTAA  196

seq1  CTTCACATGACTTATCAGACTGCCTCTTTCCATCCTGCACAGAATTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATGACTTATCAGACTGCCTCTTTCCATCCTGCACAGAATTATTA  246

seq1  CTAGTTATAATTAAACTAGTAGAGTGCTTTTCAGAGAACTGCACAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTATAATTAAACTAGTAGAGTGCTTTTCAGAGAACTGCACAGAATC  296

seq1  TGCCATTGAACTAAAAGCCATAGTCGATATGCATCTTGGGAGTAAAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGAACTAAAAGCCATAGTCGATATGCATCTTGGGAGTAAAAAGT  346

seq1  GAGGTTTCCCTTTTTACTTCTTAGATAAAATGAAATTGCAAGCAACAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTCCCTTTTTACTTCTTAGATAAAATGAAATTGCAAGCAACAACA  396

seq1  TTCTCCTGTTCCTAGGGTTTTAAAGACCAAATTCTTCACGATTCAGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTTCCTAGGGTTTTAAAGACCAAATTCTTCACGATTCAGCTAG  446

seq1  ATTTTCATTGAAATTCATCACAGTCCCTCTGCAGCTGTGGCCTCAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTGAAATTCATCACAGTCCCTCTGCAGCTGTGGCCTCAAAAAT  496

seq1  ACCATTTCTGCATTTATTTTAGCCTTGTGGAATAACTGCAGAGAAACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTGCATTTATTTTAGCCTTGTGGAATAACTGCAGAGAAACCAC  546

seq1  AGAGTCAATGAGACTCAAAATGCCTCAAATCCTTCCTGCTCTGGAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAATGAGACTCAAAATGCCTCAAATCCTTCCTGCTCTGGAGTTTT  596

seq1  CCATCTTCACATCAAAGCATTTCATGCCCGTCAGCAACTTTTTAATGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCACATCAAAGCATTTCATGCCCGTCAGCAACTTTTTAATGCGT  646

seq1  TTGCTCCTTGTGTGCACAGCTTCCATTTAAAGAGTCTCCTTGGCTGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTTGTGTGCACAGCTTCCATTTAAAGAGTCTCCTTGGCTGGTTG  696

seq1  CTCTGATGAAGTTGTCTGCTTGCCAGGAAAGCAATGCAGAAGTTACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGAAGTTGTCTGCTTGCCAGGAAAGCAATGCAGAAGTTACAGAA  746

seq1  GAGGCACCAGGTCCCCTTTTTAGAAGACATGAGTTTCAGATGAGAGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACCAGGTCCCCTTTTTAGAAGACATGAGTTTCAGATGAGAGCTAA  796

seq1  CTTCACTTTTTGAGAGACTACTGCTCTTTGTACCAGGGACAAAGTTTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTTTTGAGAGACTACTGCTCTTTGTACCAGGGACAAAGTTTACA  846

seq1  ACCTGTGGAAATACAAATGAGTATAAAAGACTTAAATGAGGATATTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGGAAATACAAATGAGTATAAAAGACTTAAATGAGGATATTATTT  896

seq1  ACAAGGAGCCAAAGACAATAGGAGTAATGAGGGGATTCTATAAGAGATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGCCAAAGACAATAGGAGTAATGAGGGGATTCTATAAGAGATAA  946

seq1  TGTCATGTCCTTAATTCAGGAGGTAAATAGGGTTGTGTTTGCTAGTATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTCCTTAATTCAGGAGGTAAATAGGGTTGTGTTTGCTAGTATTG  996

seq1  TACTTGTACAGCAGGCTGAAAAGCATGCAATTGTTATTTTTAGAACATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTACAGCAGGCTGAAAAGCATGCAATTGTTATTTTTAGAACATTA  1046

seq1  AAAAGAACTACCTGATTTGAATAGTCCTTTCATTAAAAGAAAATAAGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTACCTGATTTGAATAGTCCTTTCATTAAAAGAAAATAAGAAA  1096

seq1  TAACAACACATTTAACAGTAGATTTGCAAAAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  TAACAACACATTTAACAGTAGATTTGCAAAAGAATTC  1133