BAC Information

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BAC

Clone NameB6Ng01-161K13
Chromosome12 (Build37)
Map Location 106,950,316 - 107,128,626
singlet/doubletdoublet
Overlap geneAk7, Papola
Upstream geneDicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik
Downstream geneVrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161K13.bB6Ng01-161K13.g
ACCDH954713DH954714
length592934
definitionDH954713|Mus musculus domesticus DNA, BAC clone: B6Ng01-161K13, 5' end.DH954714|Mus musculus domesticus DNA, BAC clone: B6Ng01-161K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,950,316 - 106,950,910)(107,128,095 - 107,128,626)
sequence
aaagatcctgtcttcaagtaaggttgcaggctgaagtagtaggaattagg
aggtcaacacatatgtggtggtttgaatgagaatggccccacataggctc
gtgtatttgaatgcttggttcctagctggtagaactgtttgggaaggatt
agggggtgtggctttgttgaaggaggtgtgtcactgggcatgcgtgggct
ttgaggttccagtctctttctctccacctcctatttatggaccaagtgta
ggctgtcagctactgctccagtgccatggctgcctgcctattgctgtgct
ccctgtcacagtggacaagggctttaacagtctgaaactataagccatcc
ccaattaaattttttcttttatcagttgccacagtcatggtgtctcttca
cagcatcattagaacactgactaagacaatatcctctcagggagaggaga
caattcaacgcatgttatcagcctttttagagggtctttttttgtgggat
gaatgtagaagggggtagcacacagccggaacacaaggtgagagcatcaa
gacagagatggactgggtgtggtggcacatgccttttatccc
gaattccaggtgaagaaaaacattttctgtaaaatcatagaagaaaactt
cccaaatcttaagagatgcccatgaagatacaaaggcctacagaacacta
agtagacaggatcaggaaaaaacttctcatgacctattatagtttgtctt
agttagggatttattgctgtgaccaaggtaactcttataaaggacagcat
ttaatttgggctagcttgcagagcttcagtccattatcatcatagtagaa
agcatggcagtgttcagacagacatggtgttagaggactggatccaaagg
aagccaggagaggactctctcctgcaggcagccaggaggagggcctctct
tcttacactggaaagagcttaagcaaaggacttcaaagccccacacacac
ccacctctgacagtgatgcacttcctccaacgaggccacaccccttaata
gtgtcacttcccaagggccaagcatagtctaatcaccacacagttaaaac
actaaaagtctagaataaagaaaggtattaaaaaactgtaagaagaaaga
gtcaggtcacgtgtcaatgtggggccataagaataacatccaactgttca
acagaaacttttaaatacagccagaagtatttggagagatataatccaca
tgtcgccagattatacattgcaacagaaatacccataaaacctgtgtttc
ataagtgaaggagaaaaaagctttccatgataaaacaggcataaaaaaag
gatttgtcaccaccaagccagctctacagagggtactggagaattctttg
accaaatagagttaacacatgcagaagcacgggaaaacaatgatagaaga
gaacaatacacaaactgacaagtgagagaacctacatacatctgtcataa
tatctgggatatttcaaaacttattttaattagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106950316_106950910
seq2: B6Ng01-161K13.b_45_642

seq1  GAATTCAAAGATCCTGTCTTCAAGTAAGGTTGCAGGCTGAAGTAGTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATCCTGTCTTCAAGTAAGGTTGCAGGCTGAAGTAGTAGGA  50

seq1  ATTAGGAGGTCAACACATATGTGGTGGTTTGAATGAGAATGGCCCCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAGGTCAACACATATGTGGTGGTTTGAATGAGAATGGCCCCACAT  100

seq1  AGGCTCGTGTATTTGAATGCTTGGTTCCTAGCTGGTAGAACTGTTTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCGTGTATTTGAATGCTTGGTTCCTAGCTGGTAGAACTGTTTGGGA  150

seq1  AGGATTAGGGGGTGTGGCTTTGTTGAAGGAGGTGTGTCACTGGGCATGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGGGGGTGTGGCTTTGTTGAAGGAGGTGTGTCACTGGGCATGCG  200

seq1  TGGGCTTTGAGGTTCCAGTCTCTTTCTCTCCACCTCCTATTTATGGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTGAGGTTCCAGTCTCTTTCTCTCCACCTCCTATTTATGGACCA  250

seq1  AGTGTAGGCTGTCAGCTACTGCTCCAGTGCCATGGCTGCCTGCCTATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGGCTGTCAGCTACTGCTCCAGTGCCATGGCTGCCTGCCTATTGC  300

seq1  TGTGCTCCCTGTCACAGTGGACAAGGGCTTTAACAGTCTGAAACTATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCCTGTCACAGTGGACAAGGGCTTTAACAGTCTGAAACTATAAG  350

seq1  CCATCCCCAATTAAATTTTTTCTTTTATCAGTTGCCACAGTCATGGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCAATTAAATTTTTTCTTTTATCAGTTGCCACAGTCATGGTGTC  400

seq1  TCTTCACAGCATCATTAGAACACTGACTAAGACAATATCCTCTCAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGCATCATTAGAACACTGACTAAGACAATATCCTCTCAGGGAG  450

seq1  AGGAGACAATTCAACGCATGTTATCAGCC-TTTTAGAGGGTC--TTTTTC  497
      ||||||||||||||||||||||||||||| ||||||||||||  ||||| 
seq2  AGGAGACAATTCAACGCATGTTATCAGCCTTTTTAGAGGGTCTTTTTTTG  500

seq1  TGGGATGAATGTAGAAGGGGGTAGCACACAGCCGGAACACAAGGTGAGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGAATGTAGAAGGGGGTAGCACACAGCCGGAACACAAGGTGAGAG  550

seq1  CATCAAGACAGAGATGGACTGGGTGTGGTGGCACATGCCTTTAATCCC  595
      |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATCAAGACAGAGATGGACTGGGTGTGGTGGCACATGCCTTTTATCCC  598

seq1: chr12_107128095_107128626
seq2: B6Ng01-161K13.g_497_1003 (reverse)

seq1  CCTAATTAAAAATAAAGTTTTGAAATATCCCAAATTATTATTGACAGATG  50
      |||||||||||   |||||||||||||||||| | ||||| |||||||||
seq2  CCTAATTAAAA--TAAGTTTTGAAATATCCCAGA-TATTA-TGACAGATG  46

seq1  TATGTAAGTTTCTCTCACTTTGTCAGTTTGGTGGTATTTGTCCTCTTTCT  100
      ||||| || ||||||||| |||||||||||   ||| |||| |||||   
seq2  TATGT-AGGTTCTCTCAC-TTGTCAGTTTG--TGTA-TTGTTCTCTT--C  89

seq1  TATCATTTGTTTTTCCCCGTGGCTTCCTGCATGTGTTTAACCTCCTATTT  150
      ||||| |||||||  ||||| |||| ||||||||| |||||   ||||||
seq2  TATCA-TTGTTTT--CCCGT-GCTT-CTGCATGTG-TTAAC--TCTATTT  131

seq1  GGTCCAAAGAATTCCTCCCAGTACCCTCTGTAGAGCTGGCTTGGTGGTGA  200
      ||| ||||||||||   |||||||||||||||||||||||||||||||||
seq2  GGT-CAAAGAATTC--TCCAGTACCCTCTGTAGAGCTGGCTTGGTGGTGA  178

seq1  CAAATTCCTTTTTTTATGCCTGTTTTTATCATGGAAAGCTTTTTTTCTCC  250
      |||| ||||||||||||||||| |||||||||||||||| ||||||||||
seq2  CAAA-TCCTTTTTTTATGCCTG-TTTTATCATGGAAAGC-TTTTTTCTCC  225

seq1  TTCACTTATGAAACACAGGTTTTATGGGTATTTTCTGTTGCAATGTATAA  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCACTTATGAAACACAGGTTTTATGGGTA-TTTCTGTTGCAATGTATAA  274

seq1  TCTGGCGACATGTGGATTATATCTCTCCAAATACTTCTGGCTGTATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCGACATGTGGATTATATCTCTCCAAATACTTCTGGCTGTATTTAA  324

seq1  AAGTTTCTGTTGAACAGTTGGATGTTATTCTTATGGCCCCACATTGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTGTTGAACAGTTGGATGTTATTCTTATGGCCCCACATTGACAC  374

seq1  GTGACCTGACTCTTTCTTCTTACAG-TTTTTAATACCTTTCTTTATTCTA  449
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGACCTGACTCTTTCTTCTTACAGTTTTTTAATACCTTTCTTTATTCTA  424

seq1  GACTTTTAGTGTTTTAACTGTGTGGTGATTAGACTATGCTTGGCCCTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAGTGTTTTAACTGTGTGGTGATTAGACTATGCTTGGCCCTTGG  474

seq1  GAAGTGACACTATTAAGGGGTGTGGCCTCGTTG  532
      |||||||||||||||||||||||||||||||||
seq2  GAAGTGACACTATTAAGGGGTGTGGCCTCGTTG  507