BAC Information

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BAC

Clone NameB6Ng01-162D15
Chromosome12 (Build37)
Map Location 101,681,092 - 101,863,891
singlet/doubletdoublet
Overlap geneTtc7b, Rps6ka5
Upstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1
Downstream geneLOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D15.bB6Ng01-162D15.g
ACCDH955117DH955118
length1,129822
definitionDH955117|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D15, 5' end.DH955118|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,681,092 - 101,682,217)(101,863,069 - 101,863,891)
sequence
gaattctacgtggagaaagcagtataaagggaaactgtgcttcccagggt
ggctaactgcgtatgtgatggctattcctggttgtcaacttgactgcatt
tggaatgaactacgatccggaaatggagggcccacctgtgatccagattt
tgaagctggaaaacacaggcttctgacccagatcttgatgtggagatctt
gagggataatacccatgaaaagcttgggcccaggcaaggtactacatgcc
tttaattccaggagactgaggcaagcagatctctgagttcaaggtcagcc
tgagacaaagcaagtcctagatccaggggaggtggtacacacctttaatc
tggccacaccttctgctggagacctgcatgagaacattagaaggaagtct
cttcttcacctgcttgcacttacattttggagcccatttcttcaggactc
cagtctatacaaaaaaccacctgaaacaactagcctcatgggacttctca
ttcccagctgcccattgttgggttagttggactacaaactgtaagtcatt
acgataaattccctggatatacagagacgttccgttagttctgagactct
ggggaccctgactaatacgacctagggtcactttctcctgcatcatttgt
gcctggctctctccaggcaagcttctgctcttgccccccacctggtcttc
tcaaggtcacagtgtcttctgttgtcgggcagtttctctccttgttcaac
cttttgctcctcttccctacatgctcaggaccactctgcaggtgacctct
gctcctggctctcagagcaccctcacagcttccccctgccccctgcctct
gctggcttctctcccagatctttttaccccattcccacttcctgcaggtc
cctgagctggcttcctcggcacattcgatagtcatgctatgtgctcagtg
atttcactgtctctggactttgaacatatttatgtgtcaaaaggcaagct
ttaagactcaaatttaggccttgtctatgttttgtaaccttttccttgct
gtgctacccctcaggaggtaaattcaaaaaagaaaaaagttgaaaagcag
cttctgaatttccttttttccagaactga
gaattcatagatgttaaatctataagatccgtagtgccatctgtgcatat
ttatactgtgtgtaatattaatagcacacaaaggaggagtgaggataaag
ctgattaggagtaatgttttatacattactatgtcaatatgtagaaagct
agcaagagaacattagaaaataaaaattattttaaaaattatatatagta
tatgttactatatatccgatgaaagatatagaaataaaaaacaacagaga
aacaaaaaaaaatggtatatgtaaagtgacaaacacaaatctagctataa
tcaatagcaacattaaatacaaatagctacctattctaactaaaaagcag
aagttgtcggacttgaccaaaaaagataaaaaaaattgaactgcaggatg
ttagaatgaggtacactgcacattttaaatatataaatattctaatggga
gagagatgagaacatggaaaatgttcttctgcagaaagtaaccacaaaga
tggatagtgtccggtccaaaggaaatgagaaattttaaaataagtaacaa
catatgtgagatgaataaaatacatttgatcagggtttatatgttcctat
aaaggtgtactccggggaggcaataggcagagtgggtttggatgtcagca
gcatggtttcattatgagggattcccccttagaagggcctcatgtattct
tctctcgagttttgacaccagatgaatgaaatgaggacatgacctctcca
ggtatggggtgaggagaaggattttattggtgatgtaggggagagacagc
cagagtgctcaggtagagtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_101681092_101682217
seq2: B6Ng01-162D15.b_42_1170

seq1  GAATTCTACGTGGAGAAAGCAAGTATAAAGGGAAACTGTGCTTCCCAGGG  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATTCTACGTGGAGAAAGC-AGTATAAAGGGAAACTGTGCTTCCCAGGG  49

seq1  TGGCTAACTGCGTATGTGATGGCTATTCCTGGTTGTCAACTTGACTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAACTGCGTATGTGATGGCTATTCCTGGTTGTCAACTTGACTGCAT  99

seq1  TTGGAATGAACTACAATCCAGAAATGGAGGGCCCACCTGTGATCCAGATT  150
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  TTGGAATGAACTACGATCCGGAAATGGAGGGCCCACCTGTGATCCAGATT  149

seq1  TTGAAGCTGGAAAACACAGGCTTCTGACCCAGATCTTGATGTGGAGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTGGAAAACACAGGCTTCTGACCCAGATCTTGATGTGGAGATCT  199

seq1  TGAGGCATAGTAGCCATGAAAAGCTTGGGCCCAGGCAAGGTACTACATGC  250
      ||||| ||| || |||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATAATACCCATGAAAAGCTTGGGCCCAGGCAAGGTACTACATGC  249

seq1  CTTTAATTCCAGGAGACTGAGGCAAGCAGATCTCTGAGTTCAAGGTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCCAGGAGACTGAGGCAAGCAGATCTCTGAGTTCAAGGTCAGC  299

seq1  CTGAGACAAAGCAAGTCCTAGATCCAGGGGTGGTGGTACACACCTTTAAT  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGAGACAAAGCAAGTCCTAGATCCAGGGGAGGTGGTACACACCTTTAAT  349

seq1  CTGGCCACACCTTCTGCTGGAGACCTGCATGAGAACATTAGAAGGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACACCTTCTGCTGGAGACCTGCATGAGAACATTAGAAGGAAGTC  399

seq1  TCTTCTTCACCTGCTTGCACTTACATTTTGGAGCCCATTTCTTCAGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCACCTGCTTGCACTTACATTTTGGAGCCCATTTCTTCAGGACT  449

seq1  CCAGTCTATACAGAAGACCAGCTGAAACAACTAGCCTCATGGGACTTCTC  500
      |||||||||||| || |||| |||||||||||||||||||||||||||||
seq2  CCAGTCTATACAAAAAACCACCTGAAACAACTAGCCTCATGGGACTTCTC  499

seq1  ATTCCCAGCTGCCCATTGTTGGGTTAGTTGGACTACAGACTGTAAGTCAT  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTCCCAGCTGCCCATTGTTGGGTTAGTTGGACTACAAACTGTAAGTCAT  549

seq1  TACAATAAATTCCCTGGATATACAGAGACGTTCCGTTAGTTCTGAGACTC  600
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATAAATTCCCTGGATATACAGAGACGTTCCGTTAGTTCTGAGACTC  599

seq1  TGGGGACCCTGACTAATACGACCTAGGGTCACTTTCTCCTGCATCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCCTGACTAATACGACCTAGGGTCACTTTCTCCTGCATCATTTG  649

seq1  TGCCTGGCTCTCTCCAGGCAAGCTTCTGCTCTTGCCCCCCACCTGGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTCTCTCCAGGCAAGCTTCTGCTCTTGCCCCCCACCTGGTCTT  699

seq1  CTCAAGGTCACAGTGTCTTCTGTTGTCGGGCAG-TTCTCTCCTTGTTCAA  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCAAGGTCACAGTGTCTTCTGTTGTCGGGCAGTTTCTCTCCTTGTTCAA  749

seq1  CC-TTTGCTCCTCTTCCCTACATGCTCAGGACCACTCTGCAGGTGACCTC  798
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGCTCCTCTTCCCTACATGCTCAGGACCACTCTGCAGGTGACCTC  799

seq1  TGCTCCTGGCTCTCAGAGCACCCTCACAGCTTCCCCCTGCCCCCTGCCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGGCTCTCAGAGCACCCTCACAGCTTCCCCCTGCCCCCTGCCTC  849

seq1  TGCTGGCTTCTCTCCCAGATCTTTTTACCCCATTCCCACTTCCTGCAGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTTCTCTCCCAGATCTTTTTACCCCATTCCCACTTCCTGCAGGT  899

seq1  CCCTGAGCTGGCTTCCTCGGCCACAATTCGATAGTCATGCTATGTGCTCA  948
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  CCCTGAGCTGGCTTCCTCGG-CAC-ATTCGATAGTCATGCTATGTGCTCA  947

seq1  GTGATTTCACTGTCTCTGGACTTTGAACATATTTATGTGTCAAAAGGCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCACTGTCTCTGGACTTTGAACATATTTATGTGTCAAAAGGCAA  997

seq1  GCTTTAAGACTCAAATTTAGGCCTTGTCTATG-TTTGT-ACCTTTTCCTT  1046
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  GCTTTAAGACTCAAATTTAGGCCTTGTCTATGTTTTGTAACCTTTTCCTT  1047

seq1  GCTGGTGCTACCCCTCAGGATGTAAA-TCAAATA--GAACAAGTTGAAAA  1093
      ||| |||||||||||||||| ||||| ||||| |   || ||||||||||
seq2  GCT-GTGCTACCCCTCAGGAGGTAAATTCAAAAAAGAAAAAAGTTGAAAA  1096

seq1  GCAAGCTTCTG-ATTTCCCTTTTTCCAGACCTGA  1126
      || |||||||| |||||| |||||||||| ||||
seq2  GC-AGCTTCTGAATTTCCTTTTTTCCAGAACTGA  1129

seq1: chr12_101863069_101863891
seq2: B6Ng01-162D15.g_68_889 (reverse)

seq1  TGGACTCTTCCAGATGCCTCTGGCTGTCTCTCCCTTACATCTACAATAAA  50
      |||||||| || ||   ||||||||||||||||| ||||||  |||||||
seq2  TGGACTCTACCTGAGCACTCTGGCTGTCTCTCCCCTACATCACCAATAAA  50

seq1  ATCCTTCTCCTCA-CCCATACCTTGGAGAGGTCATGTCCTCATTTCATTC  99
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  ATCCTTCTCCTCACCCCATACC-TGGAGAGGTCATGTCCTCATTTCATTC  99

seq1  ATCTGGTGTCAAAACTCGAGAGAAGAATACATGAGGCCCCTTCTAAGGGG  149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCTGGTGTCAAAACTCGAGAGAAGAATACATGAGG-CCCTTCTAAGGGG  148

seq1  GAATCCCTCATAATGAAACCATGCTGCTGACATCCAAAACCACTCTGCCT  199
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAATCCCTCATAATGAAACCATGCTGCTGACATCCAAACCCACTCTGCCT  198

seq1  ATTGCCTCCCCTGAGTACACCTTTATAGGAACATATAAACCCTGATCAAA  249
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTCCCCGGAGTACACCTTTATAGGAACATATAAACCCTGATCAAA  248

seq1  TGTATTTTATTCATCAAACATATGTTGTTACTTATTTTAAAATTTCTCAT  299
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  TGTATTTTATTCATCTCACATATGTTGTTACTTATTTTAAAATTTCTCAT  298

seq1  TTCCTTTGGACCGGACACTATCCATCTTTGTGGTTACTTTCTGCAGAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGGACCGGACACTATCCATCTTTGTGGTTACTTTCTGCAGAAGA  348

seq1  ACATTTTCCATGTTCTCATCTCTCTCCCATTAGAATATTTATATATTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCATGTTCTCATCTCTCTCCCATTAGAATATTTATATATTTAA  398

seq1  AATCTGCAGTGTACCTCATTCTAACATCCTGCAGTTCAATTTTTTTTATC  449
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCAGTGTACCTCATTCTAACATCCTGCAGTTCAATTTTTTTTATC  448

seq1  TTTTTTGCTCAAGTCCGACAACTTCTGCTTTTTAGTTAGAATAGGTAGCT  499
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTCAAGTCCGACAACTTCTGCTTTTTAGTTAGAATAGGTAGCT  498

seq1  ATTTGTATTTAATGTTGCTATTGATTATAGCTAGATTTGTGTTTGTCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATTTAATGTTGCTATTGATTATAGCTAGATTTGTGTTTGTCACT  548

seq1  TTACATATACCATTTTTTTTTGTTTCTCTGTTGTTTTTTATTTCTATATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATACCATTTTTTTTTGTTTCTCTGTTGTTTTTTATTTCTATATC  598

seq1  TTTCATCGGATATATAGTAACATATACTATATATAATTTTTAAAATAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCGGATATATAGTAACATATACTATATATAATTTTTAAAATAATT  648

seq1  TTTATTTTCTAATGTTCTCTTGCTAGCTTTCTACATATTGACATAGTAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTAATGTTCTCTTGCTAGCTTTCTACATATTGACATAGTAAT  698

seq1  GTATAAAACATTACTCCTAATCAGCTTTATCCTCACTCCTCCTTTTTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTATAAAACATTACTCCTAATCAGCTTTATCCTCACTCCTCCTTTGTGTG  748

seq1  CTATTAATATTACACACAGTATAACTATGCACAGCTGGCACTCTGGATCT  799
      |||||||||||||||||||||||| ||||||||| |||||||  ||||||
seq2  CTATTAATATTACACACAGTATAAATATGCACAGATGGCACTACGGATCT  798

seq1  TATAGATTTCACATCTATGAATTC  823
      ||||||||| ||||||||||||||
seq2  TATAGATTTAACATCTATGAATTC  822