BAC Information

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BAC

Clone NameB6Ng01-162F11
Chromosome12 (Build37)
Map Location 10,216,711 - 10,309,048
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC633030, LOC100042238, Osr1, LOC382567
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162F11.bB6Ng01-162F11.g
ACCDH955203DH955204
length6831,142
definitionDH955203|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F11, 5' end.DH955204|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,308,372 - 10,309,048)(10,216,711 - 10,217,879)
sequence
gaattcatgaaaataactgggcttggggtattagctagggctttagcctt
ggcttgaccaacatctatctttgagatctcagaccatttattccatccat
ttgaatcctttatggcacattaagtcatttcatttttcttgataaccacg
tgttcttccaactctaatttttgttgtgattattttacaaagatgtaggt
tgtatagtttttcaagcatgatacatataagacctgcaaaactttttcac
ttcattttgaattttggattaaacatactttaggtattatttagatgtga
tcaggcaaacttgttaaatcattctttactgagaagtataatcataagat
tctccttttatatctctgtcactctgtgtgtgtatgtttgtgtgtgtata
tttgtgcttatagttttgtgagtatgtgtgtgtgtgtgtgtgtgcatgca
tgtgcgtacatgaatatttacatatgctgtttgggattgaacccaggatc
ttcagaatgctaggaagcactctaccaccaagttcttaatgtaaatcttt
aaactttttcaaaagagaaagaaaagtcaaatattttcttaaatagtcca
caagaatactaggtttacatttttgggaatctttgcaaaggaagtatcat
cctgttttttattaaaactaaatcactacactt
gaattccttttgagtgctaacatgctatgattctaatctttgccctcaaa
gatgaagttgaacactccctttccttaaaagtcctgaggcccctgtgaac
tagaaaagtataattcagggcatgttggtcatttgccctacattgtaaaa
ctgccaagactaaagacaggccgaggagccaaagactgcattttcctgtg
ttgttgacatttcttccaagacatatttgctgtggtttctcttattttgt
tccagtcttcaatacttttccagtttattctagttcctgggtaaaacctt
tcttctttctactcactctatcactttgctttaaaaaaagaatagaaaga
aaaaaattaaaatagaagttactaactgttagaaagctttagaaaatgtg
gtttctaatttcctaatatttggtagaaaacaagatacacttgtattttc
tttgtagaaaagtgcttgaacatctaactttggtggaagtctgatcatat
tatagagattcctagttggcaatacaatcaatcaatgtagggattccctt
caccaaatatccactgtgaccaaagattagttctctctcaccataaataa
tttagaaagcctactaaataaacacttcaatagactcataaggttgctaa
ataaacaagcagtacacacacaagataaaccttttaatggaatggctaag
ggaatggacttctaaagaatatttactttggaaccaagataaaacccaag
acggagtttaagagacaaatggcacacagaatgtaccctgtcctctgtaa
atgaagaaggcaagaatactgcctgtgatctgtggtatgttgggcttctg
ggatctagtttaagcaacgaaaaagaaaattgttttcactttgaataatg
caaagacttgtgaactttcatgtgctacatttgctttgtgttgagagacc
aaatacatcacatggaaacattctattttttatggaaataatgtctgaca
cccagaatcttgtttgtgagaaaatgcatctataagtgatgtcagctaag
ctaaacaacactaagtgctaacaatgtgagtttttgaatcatttgaacta
tacagagcttgccttgatgcctggttctcacactgctgattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10308372_10309048
seq2: B6Ng01-162F11.b_49_730 (reverse)

seq1  AGTGTAGTGATTTAG-TTTAAT-AACTACAGGATGCTACTTCCTTTGCAA  48
      ||||||||||||||| |||||| ||  |||||||| ||||||||||||||
seq2  AGTGTAGTGATTTAGTTTTAATAAAAAACAGGATGATACTTCCTTTGCAA  50

seq1  AGATTCCC-AAAATGTAAACCTAGTATTCTTGTGGACTATTTAAGAAAAT  97
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCAAAAATGTAAACCTAGTATTCTTGTGGACTATTTAAGAAAAT  100

seq1  ATTTGACTTTTCTTTCTCTTT--GAAAAGTTTAAAGATTTACATTAAGAA  145
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  ATTTGACTTTTCTTTCTCTTTTGAAAAAGTTTAAAGATTTACATTAAGAA  150

seq1  CTTGGTGGTAGAGTGCTTCCTAGCATTCTGAAGATCCTGGGTTCAATCCC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGGTAGAGTGCTTCCTAGCATTCTGAAGATCCTGGGTTCAATCCC  200

seq1  AAACAGCATATGTAAATATTCATGTACGCACATGCATGCACACACACACA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATATGTAAATATTCATGTACGCACATGCATGCACACACACACA  250

seq1  CACACACATACTCACAAAACTATAAGCACAAATATACACACACAAACATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATACTCACAAAACTATAAGCACAAATATACACACACAAACATA  300

seq1  CACACACAGAGTGACAGAGATATAAAAGGAGAATCTTATGATTATACTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGAGTGACAGAGATATAAAAGGAGAATCTTATGATTATACTTC  350

seq1  TCAGTAAAGAATGATTTAACAAGTTTGCCTGATCACATCTAAATAATACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAGAATGATTTAACAAGTTTGCCTGATCACATCTAAATAATACC  400

seq1  TAAAGTATGTTTAATCCAAAATTCAAAATGAAGTGAAAAAGTTTTGCAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATGTTTAATCCAAAATTCAAAATGAAGTGAAAAAGTTTTGCAGG  450

seq1  TCTTATATGTATCATGCTTGAAAAACTATACAACCTACATCTTTGTAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATGTATCATGCTTGAAAAACTATACAACCTACATCTTTGTAAAA  500

seq1  TAATCACAACAAAAATTAGAGTTGGAAGAACACGTGGTTATCAAGAAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAACAAAAATTAGAGTTGGAAGAACACGTGGTTATCAAGAAAAA  550

seq1  TGAAATGACTTAATGTGCCATAAAGGATTCAAATGGATGGAATAAATGGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGACTTAATGTGCCATAAAGGATTCAAATGGATGGAATAAATGGT  600

seq1  CTGAGATCTCAAAGATAGATGTTGGTCAAGCCAAGGCTAAAGCCCTAGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCTCAAAGATAGATGTTGGTCAAGCCAAGGCTAAAGCCCTAGCT  650

seq1  AATACCCCAAGCCCAGTTATTTTCATGAATTC  677
      ||||||||||||||||||||||||||||||||
seq2  AATACCCCAAGCCCAGTTATTTTCATGAATTC  682

seq1: chr12_10216711_10217879
seq2: B6Ng01-162F11.g_68_1209

seq1  GAATTCCTTTTGAGTGCTAACATGCTATGATTCTAATCTTTGCCCTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGAGTGCTAACATGCTATGATTCTAATCTTTGCCCTCAAA  50

seq1  GATGAAGTTGAACACTCCCTTTCCTTAAAAGTCCTGAGGCCCCTGTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTTGAACACTCCCTTTCCTTAAAAGTCCTGAGGCCCCTGTGAAC  100

seq1  TAGAAAAGTATAATTCAGGGCATGTTGGTCATTTGCCCTACATTGTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGTATAATTCAGGGCATGTTGGTCATTTGCCCTACATTGTAAAA  150

seq1  CTGCCAAGACTAAAGACAGGCCGAGGAGCCAAAGACTGCATTTTCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGACTAAAGACAGGCCGAGGAGCCAAAGACTGCATTTTCCTGTG  200

seq1  TTGTTGACATTTCTTCCAAGACATATTTGCTGTGGTTTCTCTTATTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGACATTTCTTCCAAGACATATTTGCTGTGGTTTCTCTTATTTTGT  250

seq1  TCCAGTCTTCAATACTTTTCCAGTTTATTCTAGTTCCTGGGTAAAACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTTCAATACTTTTCCAGTTTATTCTAGTTCCTGGGTAAAACCTT  300

seq1  TCTTCTTTCTACTCACTCTATCACTTTGCTTTAAAAAAAGAATAGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCTACTCACTCTATCACTTTGCTTTAAAAAAAGAATAGAAAGA  350

seq1  AAAAAATTAAAATAGAAGTTACTAACTGTTAGAAAGCTTTAGAAAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAAATAGAAGTTACTAACTGTTAGAAAGCTTTAGAAAATGTG  400

seq1  GTTTCTAATTTCCTAATATTTGGTAGAAAACAAGATACACTTGTATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAATTTCCTAATATTTGGTAGAAAACAAGATACACTTGTATTTTC  450

seq1  TTTGTAGAAAAGTGCTTGAACATCTAACTTTGGTGGAAGTCTGATCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGAAAAGTGCTTGAACATCTAACTTTGGTGGAAGTCTGATCATAT  500

seq1  TATAGAGATTCCTAGTTGGCAATACAATCAATCAATGTAGGGATTCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGATTCCTAGTTGGCAATACAATCAATCAATGTAGGGATTCCCTT  550

seq1  CACCAAATATCCACTGTGACCAAAGATTAGTTCTCTCTCACCATAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATATCCACTGTGACCAAAGATTAGTTCTCTCTCACCATAAATAA  600

seq1  TTTAGAAAGCCTACTAAATAAACACTTCAATAGACTCATAAGGTTGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGCCTACTAAATAAACACTTCAATAGACTCATAAGGTTGCTAA  650

seq1  ATAAACAAGCAGTACACACACAAGATAAACCTTTTAATGGAATGGCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGCAGTACACACACAAGATAAACCTTTTAATGGAATGGCTAAG  700

seq1  GGAATGGACTTCTAAAGAATATTTACTTTGGAACCAAGATAAAACCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGACTTCTAAAGAATATTTACTTTGGAACCAAGATAAAACCCAAG  750

seq1  ACGGAGTTTAAGAGACAAATGGCACACAGAATGTACCCTGTCCTCTGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGTTTAAGAGACAAATGGCACACAGAATGTACCCTGTCCTCTGTAA  800

seq1  ATGAAGAAGGCAAGAATACTGCCTGTGATCTGTGGTATGTTGGGCTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAGGCAAGAATACTGCCTGTGATCTGTGGTATGTTGGGCTTCTG  850

seq1  GGATCTAGTTTAAGCAACGAAAAAGAAAATTGTTTTCACTTTTGAATAAT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGATCTAGTTTAAGCAACGAAAAAGAAAATTGTTTTCAC-TTTGAATAAT  899

seq1  GCAAAGACTTGTGAACTTTCAATGTGCTACATTTGCTTTGTGTTTGAGAG  950
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  GCAAAGACTTGTGAACTTTC-ATGTGCTACATTTGCTTTGTG-TTGAGAG  947

seq1  ACCAAAATACATCACATGGGAAACAATTCTATTTTTTAATGGAAAATAAT  1000
      ||| ||||||||||||| |||||| |||||||||||| |||| |||||||
seq2  ACC-AAATACATCACAT-GGAAAC-ATTCTATTTTTT-ATGG-AAATAAT  992

seq1  GTCTGACACCCAGAAATCTTGTTTGTGAGAAAAATTGCATCCTATAAAGT  1050
      ||||||||||||| |||||||||||||||||||  ||||| |||| ||||
seq2  GTCTGACACCCAG-AATCTTGTTTGTGAGAAAA--TGCAT-CTAT-AAGT  1037

seq1  GATTGTCAGCTAAGCTAAACAAACACTAAAGTTGCTAACAATGTGAGTTA  1100
      || ||||||||||||||||| ||||||||   ||||||||||||||||| 
seq2  GA-TGTCAGCTAAGCTAAAC-AACACTAA--GTGCTAACAATGTGAGTT-  1082

seq1  TTTGAAAATCATTTTAAAAACTATAACCAAGAGCTGTGCTTGATGGCTTG  1150
      ||||  ||||||||    |||||||    ||||||   |||||| || ||
seq2  TTTG--AATCATTT---GAACTATA---CAGAGCTTGCCTTGAT-GCCTG  1123

seq1  GTTCTCACACTGCTGATTC  1169
      |||||||||||||||||||
seq2  GTTCTCACACTGCTGATTC  1142